Several different numbering schemes for small subunit rRNA have been used in previous publications. Here is a table giving the mapping between these numbering schemes for the known 2'-O-methyls.
In addition to the text in this table, additional information
is available via table entry links (see legend
below
).
snoRNA | Fournier Annot | Target 2'-O-Methyl Site | Functional Verification | Match/Mismatch | snoRNA Score | Genomic Placement | Len | Chr | Start | End |
U14 | Info | SSU-Cm414 | ND | 13/1 (duplex) | 31.70 | cluster 5 | 128 | 10 | 139390 | 139263 |
U18 | Info | LSU-Am647 | + (3) | 15/0 (duplex) | 34.96 | intronic (EFB1) | 102 | 1 | 142370 | 142471 |
LSU-Cm648 | + (3) | Slide | -- | |||||||
U24 | Info | LSU-Cm1435 | + (1) | 14/0 (duplex) | 29.82 | intronic (ASC1) | 89 | 13 | 500071 | 499983 |
LSU-Am1447 | + (1) | 12/0 (duplex) | 32.40 | |||||||
LSU-Gm1448 | + (1) | Slide | -- | |||||||
snR13 | Info | LSU-Am2278 | + (2) gel | 10/0 (duplex) | 24.96 | extragenic | 124 | 4 | 1402956 | 1403079 |
LSU-Am2279 | + (2) gel | Slide | -- | |||||||
snR38 | Info | LSU-Gm2812 | + (3) | 13/0 (duplex) | 43.55 | intronic (TEF4) | 95 | 11 | 282830 | 282924 |
snR39 | Info | LSU-Am805 | + (3) | 13/0 (duplex) | 32.23 | intronic (RPL7A) | 89 | 7 | 365249 | 365161 |
snR39b | Info | LSU-Gm803 | + (2) gel | 14/0 (duplex) | 33.04 | extragenic | 96 | 7 | 366467 | 366372 |
snR40 | Info | SSU-Gm1267 | + (2) gel | 11/1 (duplex) | 25.91 | extragenic | 97 | 14 | 89208 | 89304 |
LSU-Um896 | + (2) gel | 12/0 (duplex) | 28.23 | |||||||
snR41 | Info | SSU-Am541 | + (2) gel | 11/1 (duplex) | 29.76 | cluster 3 | 110 | 16 | 719244 | 719135 |
SSU-Gm1123 | + (2) gel | 20/1 (duplex) | 33.83 | |||||||
snR47 | Info | SSU-Am619 | + (2) gel | 11/0 (duplex) | 27.88 | extragenic | 99 | 4 | 541739 | 541641 |
LSU-Am2218 | + (2) gel | 12/0 (duplex) | 29.02 | |||||||
snR48 | Info | LSU-Gm2788 | + (2) gel | 17/1 (duplex) | 20.56 | extragenic | 113 | 7 | 609578 | 609690 |
LSU-Gm2790 | + (2) gel | 15/0 (duplex) | 27.62 | |||||||
snR50 (Z14) | Info | LSU-Gm865 | + (2) gel | 12/0 (duplex) | 31.25 | extragenic | 90 | 15 | 259488 | 259577 |
snR51 | Info | SSU-Am100 | + (2) gel | 16/1 (duplex) | 33.76 | cluster 3 | 107 | 16 | 718808 | 718702 |
LSU-Um2726 | + (2) gel | 14/1 (duplex) | 23.02 | |||||||
snR52 (Z13) | Info | SSU-Am420 | + (2) gel | 13/0 (duplex) | 27.84 | extragenic | 92 | 5 | 431217 | 431126 |
LSU-Um2918 | No (2) | 11/1 (duplex) | 32.44 | |||||||
LSU-Gm2919 | No (2) | Slide? | -- | |||||||
snR53 | Info | SSU-Am796 | + (2) gel | 11/0 (duplex) | 29.86 | cluster 4 | 91 | 5 | 61699 | 61789 |
snR54 | Info | SSU-Am973 | + (2) gel | 13/0 (duplex) | 37.40 | intronic (Hyp ORF) | 86 | 13 | 163620 | 163535 |
snR55 (Z10) | Info | SSU-Um1265 | + (2) gel | 12/0 (duplex) | 22.90 | cluster 2 | 98 | 12 | 794792 | 794695 |
snR56 | Info | SSU-Gm1425 | + (2) gel | 11/0 (duplex) | 34.94 | extragenic | 88 | 2 | 88180 | 88267 |
snR57 | Info | SSU-Gm1570 | + (2) gel | 15/0 (duplex) | 21.93 | cluster 2 | 88 | 12 | 795022 | 794935 |
snR58 (Z12) | Info | LSU-Cm661 | + (2) gel | 13/0 (duplex) | 37.69 | extragenic | 96 | 15 | 136182 | 136087 |
snR59 | Info | LSU-Am805b | + (3) | 14/0 | 33.01 | intronic (RPL7B) | 78 | 16 | 173826 | 173903 |
snR60 (Z15) | Info | LSU-Am815 | + (2) gel | 10/0 (duplex) | 31.52 | extragenic | 104 | 10 | 348928 | 348825 |
LSU-Gm906 | + (2) gel | 19/0 (duplex) | 35.49 | |||||||
snR61 (Z11) | Info | LSU-Am1131 | + (2) gel | 11/0 (duplex) | 33.76 | cluster 2 | 90 | 12 | 794573 | 794484 |
snR62 | Info | LSU-Um1886 | + (2) gel | 14/0 (duplex) | 35.89 | extragenic | 100 | 15 | 409862 | 409763 |
snR63 | Info | LSU-Am2254 | + (2) gel | 12/0 (duplex) | 23.55 | extragenic | 255 | 4 | 323470 | 323216 |
snR64 | Info | LSU-Cm2335 | + (2) gel | 11/0 (duplex) | 34.95 | extragenic | 101 | 11 | 38812 | 38912 |
snR65 | Info | LSU-Um2345 | + (2) gel | 11/0 (duplex) | 33.91 | extragenic | 100 | 3 | 175909 | 176008 |
snR66 (Z16) | Info | LSU-Um2415 | + (2) gel | 12/0 (duplex) | 36.63 | extragenic | 86 | 14 | 586086 | 586171 |
snR67 | Info | LSU-Gm2616 | + (2) gel | 11/2 (duplex) | 23.72 | cluster 4 | 82 | 5 | 61352 | 61433 |
LSU-Um2721 | + (2) gel | 11/0 (duplex) | 26.39 | |||||||
snR68 | Info | LSU-Am2637 | + (2) gel | 12/0 (duplex) | 31.86 | extragenic | 136 | 9 | 97111 | 97246 |
snR69 | Info | LSU-Cm2945 | + (2) gel | 18/3 (duplex) | 29.17 | extragenic | 101 | 11 | 364418 | 364518 |
snR70 | Info | SSU-Cm1637 | + (2) gel | 10/1 (duplex) | 18.72 | cluster 3 | 165 | 16 | 719053 | 718889 |
snR71 | Info | LSU-Am2943 | + (2) gel | 9/1 (duplex) | 21.67 | extragenic | 90 | 8 | 411228 | 411317 |
snR72 (Z2) | Info | LSU-Am874 | + (2) gel | 14/0 (duplex) | 35.56 | cluster 1 | 91 | 13 | 298554 | 298644 |
snR73 (Z3) | Info | LSU-Cm2956 | + (2) gel | 12/1 (duplex) | 29.52 | cluster 1 | 103 | 13 | 298306 | 298408 |
snR74 (Z4) | Info | SSU-Am28 | + (2) gel | 13/0 (duplex) | 33.23 | cluster 1 | 80 | 13 | 298138 | 298217 |
snR75 (Z5) | Info | LSU-Gm2286 | + (2) gel | 11/0 (duplex) | 35.02 | cluster 1 | 85 | 13 | 297915 | 297999 |
snR76 (Z6) | Info | LSU-Cm2195 | + (2) gel | 13/1 (duplex) | 36.53 | cluster 1 | 101 | 13 | 297727 | 297827 |
snR77 (Z7) | Info | SSU-Um578 | + (2) gel | 14/0 (duplex) | 35.79 | cluster 1 | 84 | 13 | 297506 | 297589 |
snR78 (Z8) | Info | LSU-Um2419 | + (2) gel | 12/0 (duplex) | 27.39 | cluster 1 | 80 | 13 | 297279 | 297358 |
snR79 (Z9) | Info | SSU-Cm1006 | + (2) gel | 16/1 (duplex) | 31.27 | extragenic | 84 | 12 | 348510 | 348427 |
snR190 | Info | LSU-Gm2393 ?? | No (2) | 13/0 (duplex) | 12.80 | cluster 5 | 190 | 10 | 139648 | 139459 |
snoRNA | Fournier Annot | Target 2'-O-Methyl Site | Functional Verification | Match/Mismatch | snoRNA Score | Genomic Placement | Len | Chr | Start | End |
snR47 | Info | SSU-Am619 | + (2) gel | 11/0 (duplex) | 27.88 | extragenic | 99 | 4 | 541739 | 541641 |
Genbank entry for snoRNA (NCBI link) | snoRNA entry in Fournier snoRNA database | rRNA primer extension gel showing methyl loss in null mutant | search program output for this snoRNA | neighboring genes (SGD link) |