tRNAscan-SE: a program for improved transfer RNA detection in genomic sequence (release: 1.1)

User Manual

Todd Lowe
Department of Genetics
Washington University School of Medicine
St. Louis, MO
lowe@genetics.wustl.edu

November 1997

• Introduction
  • Brief Description
  • What is included in this package?
  • Getting Started
  • Intended Use
  • Web Resources
• Methods
• Performance / Requirements
• Default Program Operation
  • Invoking tRNAscan-SE
  • Temporary files
• Command-line Options
  • Search Mode Options
  • Output Options
  • Specify Alternate Cutoffs / Data Files
  • Miscellaneous Options
  • Options for testing & special applications
• Examples
• Support / Bug Reports / Requests for added options
• References
• FASTA Sequence Format
• Distribution and copying terms
• About this document ...