Several different numbering schemes for small subunit rRNA have been used in previous publications. Here is a table giving the mapping between these numbering schemes for the known 2'-O-methyls.
In addition to the text in this table, additional information is
available via table entry links (see legend below
).
rRNA Methyl Site | snoRNA | Fournier Annot | Functional Verfication | rRNA Match/Mismatch | snoRNA Score | Genomic Placement | Len | Chr | Start | End |
SSU-Am28 | snR74 (Z4) | Info | + (2) gel | 13/0 (duplex) | 33.23 | cluster 1 | 80 | 13 | 298138 | 298217 |
SSU-Am100 | snR51 | Info | + (2) gel | 16/1 (duplex) | 33.76 | cluster 3 | 107 | 16 | 718808 | 718702 |
SSU-Cm414 | U14 | Info | ND | 13/1 (duplex) | 31.7 | cluster 5 | 128 | 10 | 139390 | 139263 |
SSU-Am420 | snR52 | Info | + (2) gel | 13/0 (duplex) | 27.84 | extragenic | 92 | 5 | 431217 | 431126 |
SSU-Am541 | snR41 | Info | + (2) gel | 11/1 (duplex) | 29.76 | cluster 3 | 110 | 16 | 719244 | 719135 |
SSU-Um578 | snR77 (Z7) | Info | + (2) gel | 14/0 (duplex) | 35.79 | cluster 1 | 84 | 13 | 297506 | 297589 |
SSU-Am619 | snR47 | Info | + (2) gel | 11/0 (duplex) | 27.88 | extragenic | 99 | 4 | 541739 | 541641 |
SSU-Am796 | snR53 | Info | + (2) gel | 11/0 (duplex) | 29.86 | cluster 4 | 91 | 5 | 61699 | 61789 |
SSU-Am973 | snR54 | Info | + (2) gel | 13/0 (duplex) | 37.4 | intronic (Hyp ORF) | 86 | 13 | 163620 | 163535 |
SSU-Cm1006 | snR79 (Z9) | Info | + (2) gel | 16/1 (duplex) | 31.27 | extragenic | 84 | 12 | 348510 | 348427 |
SSU-Gm1123 | snR41 | Info | + (2) gel | 20/1 (duplex) | 33.83 | cluster 3 | 110 | 16 | 719244 | 719135 |
SSU-Um1265 | snR55 | Info | + (2) gel | 12/0 (duplex) | 22.9 | cluster 2 | 98 | 12 | 794792 | 794695 |
SSU-Gm1267 | snR40 | Info | + (2) gel | 11/1 (duplex) | 25.91 | extragenic | 97 | 14 | 89208 | 89304 |
SSU-Gm1425 | snR56 | Info | + (2) gel | 11/0 (duplex) | 34.94 | extragenic | 88 | 2 | 88180 | 88267 |
SSU-Gm1570 | snR57 | Info | + (2) gel | 15/0 (duplex) | 21.93 | cluster 2 | 88 | 12 | 795022 | 794935 |
SSU-Cm1637 | snR70 | Info | + (2) gel | 10/1 (duplex) | 18.72 | cluster 3 | 165 | 16 | 719053 | 718889 |
LSU-Am647 | U18 | Info | + (3) | 15/0 (duplex) | 34.96 | intronic (EFB1) | 102 | 1 | 142370 | 142471 |
LSU-Cm648 | U18 | Info | + (3) | Slide | -- | intronic (EFB1) | 102 | 1 | 142370 | 142471 |
LSU-Cm661 | snR58 | Info | + (2) gel | 13/0 (duplex) | 37.69 | extragenic | 96 | 15 | 136182 | 136087 |
LSU-Gm803 | snR39b | Info | + (2) gel | 14/0 (duplex) | 33.04 | extragenic | 96 | 7 | 366467 | 366372 |
LSU-Am805 | snR39 | Info | + (3) | 13/0 (duplex) | 32.23 | intronic (RPL7A) | 89 | 7 | 365249 | 365161 |
LSU-Am805b | snR59 | Info | + (3) | 14/0 | 33.01 | intronic (RPL7B) | 78 | 16 | 173826 | 173903 |
LSU-Am815 | snR60 | Info | + (2) gel | 10/0 (duplex) | 31.52 | extragenic | 104 | 10 | 348928 | 348825 |
LSU-Gm865 | snR50 | Info | + (2) gel | 12/0 (duplex) | 31.25 | extragenic | 90 | 15 | 259488 | 259577 |
LSU-Am874 | snR72 (Z2) | Info | + (2) gel | 14/0 (duplex) | 35.56 | cluster 1 | 91 | 13 | 298554 | 298644 |
LSU-Um896 | snR40 | Info | + (2) gel | 12/0 (duplex) | 28.23 | extragenic | 97 | 14 | 89208 | 89304 |
LSU-Gm906 | snR60 | Info | + (2) gel | 19/0 (duplex) | 35.49 | extragenic | 104 | 10 | 348928 | 348825 |
LSU-Am1131 | snR61 | Info | + (2) gel | 11/0 (duplex) | 33.76 | cluster 2 | 90 | 12 | 794573 | 794484 |
LSU-Cm1435 | U24 | Info | + (1) | 14/0 (duplex) | 29.82 | intronic (ASC1) | 89 | 13 | 500071 | 499983 |
LSU-Am1447 | U24 | Info | + (1) | 12/0 (duplex) | 32.4 | intronic (ASC1) | 89 | 13 | 500071 | 499983 |
LSU-Gm1448 | U24 | Info | + (1) | Slide | -- | intronic (ASC1) | 89 | 13 | 500071 | 499983 |
LSU-Um1886 | snR62 | Info | + (2) gel | 14/0 (duplex) | 35.89 | extragenic | 100 | 15 | 409862 | 409763 |
LSU-Cm2195 | snR76 (Z6) | Info | + (2) gel | 13/1 (duplex) | 36.53 | cluster 1 | 101 | 13 | 297727 | 297827 |
LSU-Am2218 | snR47 | Info | + (2) gel | 12/0 (duplex) | 29.02 | extragenic | 99 | 4 | 541739 | 541641 |
LSU-Am2254 | snR63 | Info | + (2) gel | 12/0 (duplex) | 23.55 | extragenic | 255 | 4 | 323470 | 323216 |
LSU-Am2278 | snR13 | Info | + (2) gel | 10/0 (duplex) | 24.96 | extragenic | 124 | 4 | 1402956 | 1403079 |
LSU-Am2279 | snR13 | Info | + (2) gel | Slide | -- | extragenic | 124 | 4 | 1402956 | 1403079 |
LSU-Gm2286 | snR75 (Z5) | Info | + (2) gel | 11/0 (duplex) | 35.02 | cluster 1 | 85 | 13 | 297915 | 297999 |
LSU-Cm2335 | snR64 | Info | + (2) gel | 11/0 (duplex) | 34.95 | extragenic | 101 | 11 | 38812 | 38912 |
LSU-Um2345 | snR65 | Info | + (2) gel | 11/0 (duplex) | 33.91 | extragenic | 100 | 3 | 175909 | 176008 |
LSU-Gm2393 ?? | snR190 | Info | No (2) | 13/0 (duplex) | 12.8 | cluster 5 | 190 | 10 | 139648 | 139459 |
LSU-Um2415 | snR66 | Info | + (2) gel | 12/0 (duplex) | 36.63 | extragenic | 86 | 14 | 586086 | 586171 |
LSU-Um2419 | snR78 (Z8) | Info | + (2) gel | 12/0 (duplex) | 27.39 | cluster 1 | 80 | 13 | 297279 | 297358 |
LSU-Gm2616 | snR67 | Info | + (2) gel | 11/2 (duplex) | 23.72 | cluster 4 | 82 | 5 | 61352 | 61433 |
LSU-Am2637 | snR68 | Info | + (2) gel | 12/0 (duplex) | 31.86 | extragenic | 136 | 9 | 97111 | 97246 |
LSU-Um2721 | snR67 | Info | + (2) gel | 11/0 (duplex) | 26.39 | cluster 4 | 82 | 5 | 61352 | 61433 |
LSU-Um2726 | snR51 | Info | + (2) gel | 14/1 (duplex) | 23.02 | cluster 3 | 107 | 16 | 718808 | 718702 |
LSU-Gm2788 | snR48 | Info | + (2) gel | 17/1 (duplex) | 20.56 | extragenic | 113 | 7 | 609578 | 609690 |
LSU-Gm2790 | snR48 | Info | + (2) gel | 15/0 (duplex) | 27.62 | extragenic | 113 | 7 | 609578 | 609690 |
LSU-Gm2812 | snR38 | Info | + (3) | 13/0 (duplex) | 43.55 | intronic (TEF4) | 95 | 11 | 282830 | 282924 |
LSU-Um2918 | snR52 | Info | No (2) | 11/1 (duplex) | 32.44 | extragenic | 92 | 5 | 431217 | 431126 |
LSU-Gm2919 | snR52 | Info | No (2) | Slide? | -- | extragenic | 92 | 5 | 431217 | 431126 |
LSU-Am2943 | snR71 | Info | + (2) gel | 9/1 (duplex) | 21.67 | extragenic | 90 | 8 | 411228 | 411317 |
LSU-Cm2945 | snR69 | Info | + (2) gel | 18/3 (duplex) | 29.17 | extragenic | 101 | 11 | 364418 | 364518 |
LSU-Cm2956 | snR73 (Z3) | Info | + (2) gel | 12/1 (duplex) | 29.52 | cluster 1 | 103 | 13 | 298306 | 298408 |
rRNA Methyl Site | snoRNA | Fournier Annot | Functional Verfication | rRNA Match/Mismatch | snoRNA Score | Genomic Placement | Len | Chr | Start | End |
SSU-Am619 | snR47 | Info | + (2) gel | 11/0 (duplex) | 27.88 | extragenic | 99 | 4 | 541739 | 541641 |
Genbank entry for snoRNA (NCBI link) | snoRNA entry in Fournier snoRNA database | rRNA primer extension gel showing methyl loss in null mutant | search program output for this snoRNA | neighboring genes |