Supplemental Table 8. Pyrococcus homolog sRNA groups
57 Homolog groups: 47 with 3 members, 8 with 2 members, and 2 singletons.
Name
|
|
C Box
|
|
D' Box
|
|
C' Box
|
|
D Box
|
|
Pho sR1 |
AAAGAAGGCG |
ATGATGA |
AGCCTTCCGCAC |
CTGA |
ATGA |
TGAGGA |
GTGGACGGCTTC |
CTGA |
GCCT-ACTCCT |
Pfu sR1 |
AGGTAAGGCG |
ATGATGA |
TGCCTTCCGCAC |
CTGA |
TTGG |
TGAGGA |
GTGGACGGCTTC |
CTGA |
GCCT-ACTCCT |
Pab sR1 |
ATAAATGGCA |
ATGATGA |
AGCCTTCCGCAC |
CTGA |
ACGG |
TGAGGA |
GTGGACGGCTTC |
CTGA |
GCCTCACTCC |
|
Pho sR2 |
AAAAAGAGGG |
ATGATGA |
GTTTTTCCCTCACT |
CTGA |
GGAG |
TGATGA |
GGAGCCGATGCA |
CTGA |
CCTCGATCAT |
Pfu sR2 |
GAAATGGGGG |
ATGATGA |
GTTTTTCCCTCACT |
CTGA |
TTAG |
TGATGA |
GGAGCCGATGCA |
CTGA |
CCTCGAGCAT |
Pab sR2 |
GAGAAAAGGG |
ATGATGA |
GTTTTTCCCTCACT |
CTGA |
GCCG |
TGATGA |
GGAGCCGATGCT |
CTGA |
CCTCTGCCAT |
|
Pho sR3 |
AATTGTGGCG |
ATGATGA |
ATAGCAAGCCAG |
CTGA |
AGAG |
TGATGA |
AGTGAACACCCC |
CTGA |
GCCTACCTAA |
Pfu sR3 |
ACCTCCGGCG |
ATGATGA |
ATAGCAAGCCAC |
CTGA |
AGAG |
TGATGA |
GGTGAACACCCC |
CTGA |
GCCTATTCCA |
Pab sR3 |
TATGAAGGCG |
ATGATGA |
GTAGCAAGCCAC |
CTGA |
CCTA |
TGATGA |
GGTGAACACCCC |
CTGA |
GCCAATTTCA |
|
Pho sR4 |
CCGAGTTGGG |
ATGATGA |
GGGAGATTTCGG |
CCGA |
GTGG |
TGAGGA |
GACTCGCATGGG |
CTGA |
CCTTTCTAAG |
Pfu sR4 |
AGCATAAGGG |
ATGATGA |
AGGAGATTTCGG |
CAGA |
GGTG |
TGAAGA |
GACTCGCATGGG |
CTGA |
CCACCACCTT |
Pab sR4 |
GAAGGATGGG |
ATGATGA |
AGGAGATTTCGG |
CCGA |
AAGG |
TGAGGA |
AACTCGCATGGG |
CTGA |
CCTTTCTCAG |
|
Pho sR5 |
ATAAGGTGTG |
ATGATGA |
ACGCCAT-CGATA |
CTGA |
GATA |
TGATGA |
CCGGATTCCTGG |
CTGA |
TTTCTTTTAT |
Pfu sR5 |
CTTATTTTGA |
ATGATGA |
GCGCCATCCGATA |
CTGA |
GGGCA |
TGATGA |
CCGGATTCCTGG |
CTGA |
TCTCATTTTC |
Pab sR5 |
AAGACAATAG |
ATGATGA |
GCGCCAT-CGATG |
CTGA |
GGAG |
TGATGA |
CCGGATTCCTGG |
CTGA |
TCTTTATTCT |
|
Pho sR6 |
TGGAAAT-GGG |
ATGATGA |
AGTTTGCTACCC |
CTGA |
AGAA |
TGATGA |
ACCCTGCCGTTA |
CTGA |
CCATTTAGCT |
Pfu sR6 |
AAAAATAGGG |
ATGATGA |
GATTTGCTACCT |
CTGA |
AAATAA |
TGATGA |
ACCCTGCCGTTA |
CTGA |
CCGTTTAACT |
Pab sR6 |
CCAATGAGGA |
ATGATGA |
GATTTGCTACCA |
CTGA |
GCAG |
TGATGA |
GCCCTGCCGTTA |
CTGA |
CCTTTTACTA |
|
Pho sR7 |
GTAATCCGGG |
ATGATGA |
ACCTCCATCCCAA- |
CTGA |
ATAAA |
TGATGA |
ATGCACATCAGG |
CTGA |
CATTACCTTT |
Pfu sR7 |
GAGATTTTCG |
ATGATGA |
GCCTCCATCCCATG |
CTGA |
AGGG |
TGATGA |
GTGCACATCAGG |
CTGA |
GCTTTATAAC |
Pab sR7 |
ATTATAAGGG |
ATGATGA |
GCCTCCAT-CCAAG |
CTGA |
GCAAG |
TGATGA |
GTGCACATCAGG |
CTGA |
ACCTTTTTAT |
|
Pho sR8 |
CGAATAGGCG |
ATGATGA |
GCTCCATCCCTAC |
CTGA |
GTTG |
TGATGA |
ATGTAGCGCGCT |
CTGA |
GCAACCCTTA |
Pfu sR8 |
TCAATGAGCA |
ATGATGA |
GCTCTATCCCTAT |
CTGA |
CCCA |
TGATGA |
CTGTAGCGCGCG |
CTGA |
GCTACTCCTT |
Pab sR8 |
TTGAAAGGCG |
ATGATGA |
GCTCCATCCCTAT |
CTGA |
GTTG |
TGATGA |
CTGTAGCGCGCT |
CTGA |
GCTACAGGCT |
|
Pho sR9 |
CCGACAGGGG |
ATGAAGA |
GCTTTTGCTTTG |
CTGA |
GCAGA |
TGATGA |
CCACGCCCTTCG |
CTGA |
CCTGCTATTT |
Pfu sR9 |
CCACAATGGG |
ATGATGA |
CCTTTTGCTTTA |
CTGA |
ACACA |
TGATGA |
CCACGCCCTTCG |
CTGA |
CCTAAATATT |
Pab sR9 |
GCCTACAGTT |
ATGATGA |
ACTTTTGCTTTG |
CTGA |
TGTGG |
TGATGA |
GCACGCCCTTCG |
CTGA |
TACTCTCTCG |
|
Pho sR10 |
TTAGCGACTA |
ATGATGA |
ACTACTCCCGG |
CTGA |
GGGG |
TGATGA |
ACCACCTACCGG |
CTGA |
GGTGAAAGCA |
Pfu sR10 |
ATTATGGCAG |
ATGATGA |
GCTACTCCCGG |
CTGA |
AAGA |
TGATGA |
ACCACCTACCGG |
CTGA |
GGTTATGGAA |
Pab sR10 |
AACGGTAGCG |
ATGATGA |
ACTACTCCCGG |
CTGA |
GCTG |
TGATGA |
ACCACCTACCGG |
CTGA |
GGTGGAAACA |
|
Pho sR11 |
CTCTAGCGGG |
ATGATGA |
CTTTGCCGAGTG |
CTGA |
GCTGG |
TGATGA |
GTAAACAGTCGT |
CTGA |
CTTTCCCTTT |
Pfu sR11 |
GCAGGAGGGG |
ATGATGA |
GTTTGCCGAGTG |
CTGA |
GCTAG |
TGATGA |
ATAAACAGTCGC |
CTGA |
CTTCCCCTCT |
Pab sR11 |
CTTTAATGGG |
ATGATGA |
CTTTGCCGAGTG |
CTGA |
GGAAG |
TGATGA |
GTAAACAGTCGC |
CTGA |
CCCCCTGCTT |
|
Pho sR12 |
ATCGGCTTGG |
ATGATGA |
GCGTTTACCGGT |
CTGA |
GCTG |
TGATGA |
TATCGGCACTGT |
CTGA |
CTAGTAATCT |
Pfu sR12 |
AAGAAAGGGG |
ATGATGA |
GCGTTTACCGGT |
CTGA |
GTTG |
TGATGA |
TACTGGCACTGT |
CTGA |
CCTTAGTAGT |
Pab sR12 |
ATCGGCTGGG |
ATGATGA |
GCGTTTACCGGT |
CTGA |
GCTG |
TGATGA |
CATCGGCACTGT |
CTGA |
CTAGTAGTCA |
|
Pho sR13 |
TCATTGTTGG |
GTGATGA |
GATGGCGGATTG |
CTGA |
GAG-A |
TGATGA |
GGACCTTAGGGG |
CTGA |
TTAAATTTCG |
Pfu sR13 |
TCCTACTGGT |
GTGATGA |
AAAGGCGGATTG |
CTGA |
GAGGA |
TGATGA |
AGACCTTAGGGG |
CTGA |
TCACACCTCA |
Pab sR13 |
TATTACTTGA |
ATGATGA |
GATGGCGGATTG |
CTGA |
GCTG- |
TGATGA |
AGACCTTAGGGT |
CTGA |
CTTCCCAAAA |
|
Pho sR14 |
CTATTAACCA |
ATGATGA |
CGGATCAACCGG |
CTGA |
TCGAA |
TGATGA |
CGTCCGCATCAC |
CTGA |
GGGTTTCAAG |
Pfu sR14 |
CTATCACCCA |
ATGATGA |
TGGATCAACCGG |
CTGA |
AGTA |
TGATGA |
GGTCCGCATCAC |
CTGA |
GGGGATGGAT |
Pab sR14 |
AGACGATCCG |
ATGATGA |
TGGATCAACCGG |
CTGA |
GTGG |
TGATGA |
AGTCCGCATCAC |
CTGA |
GGCTCTCAAG |
|
Pho sR15 |
AGATGAAGAG |
ATGATGA |
GTAAACCCGTTG |
CTGA |
GCGG |
TGATGA |
GAGGATCGACTAG |
CTGA |
ACAACATCTT |
Pfu sR15 |
TATGCATGAG |
ATGATGA |
ATAAACCCGTTG |
CTGA |
AAAA |
TGATGA |
GAGGATCGACTAG |
CTGA |
CTACAGCTCA |
Pab sR15 |
ATGTGTAGTG |
ATGATGA |
TTAAACCCGTTG |
CTGA |
GAGG |
TGATGA |
GGGGACCGACTAG |
CTGA |
ACAACACTTA |
|
Pho sR16 |
ATCAAGTCTG |
ATGATGA |
ACCTTCCCCTCAC |
CTGA |
AAGG |
TGATGA |
GCACACCGGTAGG |
CTGA |
GGGTGATAAT |
Pfu sR16 |
TGTATATCTG |
ATGATGA |
TCCTTCCCCTCAA |
CTGA |
GAGG |
TGATGA |
GCACACCGGTAGG |
CTGA |
GG-TGATAGTA |
Pab sR16 |
GTTTCCATAG |
ATGATGA |
GCCTTCCCCTCAC |
CTGA |
GTGG |
TGATGA |
GCACACCGGTAGG |
CTGA |
GGGTGATATT |
|
Pho sR17 |
ACGGTCTGCG |
ATGATGA |
GAGCGAACTGCA |
CTGA |
AAAG |
TGATGA |
CAGGGCCTTG |
CTGA |
GCGGTGATCG |
Pfu sR17 |
AAGATGCGCG |
ATGAAGA |
AAGCGAACTGCT |
CTGA |
GAGA |
TGATGA |
AAAGGGCCTAA |
CAGA |
GCGTGAGAGG |
Pab sR17 |
ACGGTTTGCG |
ATGATGA |
AAGCGAACTGCA |
CTGA |
AAAG |
TGATGA |
GAGGGCCTCG |
CTGA |
GCGGTGATGT |
|
Pho sR18 |
TTTATTTTTA |
ATGATGA |
AACAGCCAGGACC |
CTGA |
TGGGA |
TGATGA |
GTGGTGGGCTTAG |
CTGA |
TGTTGCGGTA |
Pfu sR18 |
TTAATTTTTG |
ATGATGA |
AACAGCCAGGACC |
CTGA |
TGAGA |
TGATGA |
ATGGTGGGCTTAG |
CTGA |
CGTAGCTGTT |
Pab sR18 |
TCTATTTTTG |
ATGATGA |
TACAGCCAGGACC |
CTGA |
TGGGA |
TGATGA |
GTGGTGGGCTTAG |
CTGA |
TGTTGCCGTT |
|
Pho sR19 |
TGGCGGGCTC |
GTGATGA |
GCTTTCCCTACGGC |
CCGA |
GC-TTAGGCGA |
TGAGGA |
ATACAGCCAGGG |
CTGA |
TTTTGGTGAT |
Pfu sR19 |
TGGCGGGCTT |
ATGATGA |
ACTTTCCCTACGGC |
CTGA |
GCGTCACGCGA |
TGAGGA |
ATACAGCCAGGG |
CTGA |
TGAAGGTGAT |
Pab sR19 |
TGGCGGGCAT |
ATGATGA |
GCTTTCCCTACGGC |
CCGA |
GC-TCACGCGA |
TGAGGA |
ATACAGCCAGGG |
CTGA |
TTTCGGTGAT |
|
Pho sR20 |
ATGAATGGCG |
ATGATGA |
GGCCTCGATTGG |
CTGA |
AT-- |
CGATGA |
TTGAGAGGGACTTGG |
CTGA |
GCGGTGATTA |
Pfu sR20 |
TAGAGGAGCA |
ATGATGA |
AGCCTCGATTGG |
CTGA |
TT-- |
TGATGA |
TTGGGAGGGACTTGG |
CTGA |
GCGGTGATTA |
Pab sR20 |
GAGGACCGCG |
ATGATGA |
AGCCTCGATTGG |
CTGA |
ATCG |
CGATGA |
TTGGGAGGGACTTGG |
CCGA |
GCGGTGGTTA |
|
Pho sR21 |
TACCATGCCG |
ATGATGA |
GACCGGTACTGG |
CCGA |
AGTA |
TGATGA |
GCACTCGGTTAG |
CTGA |
GGCCTGAAAA |
Pfu sR21 |
TTGTCTGTCG |
ATGACGA |
AACCGGCACTAT |
CTGA |
ATGA |
TGATGA |
GCACTCGGTTGT |
CTGA |
GACTACTAAA |
Pab sR21 |
TAGCTTGCCA |
ATGATGA |
GACCGGCACTAA |
CTGA |
GTTG |
TGATGA |
GCACTCGGTTGG |
CTGA |
GACTGAAAAC |
|
Pho sR22 |
GGAACATCCG |
ATGATGG |
GAACAGGGTAGCTG |
CCGA |
GT |
TGATGA |
GGAAGCCGTTCCAGA |
CTGA |
GGAAAGAAAA |
Pfu sR22 |
TAATTGCCCG |
ATGATGG |
GAACAGGGTAGCTG |
CCGA |
GC |
TGATGA |
GGAAGCCGTTCCAGA |
CTGA |
GGGAAAAGTT |
Pab sR22 |
GAAATGCCCG |
ATGATGC |
CAACAGGGTAGCTG |
CCGA |
GG |
CGATGA |
GGAAGCCGTTCCAGA |
CTGA |
GGGCGTAGCA |
|
Pho sR23 |
TCCTATTAAG |
ATGATGA |
ATCTGGAGCCCC |
CTGA |
TCGG |
TGATGA |
TCAGTCTGCGGAG |
CTGA |
TAACATGATT |
Pfu sR23 |
GTAAAGTTGA |
ATGATGA |
ATCTGGAGCCCA |
CTGA |
TTTAA |
TGATGA |
CCTGTTCGCGGGG |
CTGA |
TGCTGTGATA |
Pab sR23 |
ATACTAAAAG |
ATGATGA |
ATCTGGAGCCCC |
CTGA |
GTGA |
TGATGA |
GCAGTCTGCGGAG |
CTGA |
TATCATGATT |
|
Pho sR24 |
AAGTTACCCT |
ATGATGA |
GAGAGCTGTTAA |
ATGA |
G |
CGGTGA |
TTAAAGGATGGCTGG |
CTGA |
GGGTGAGATA |
Pfu sR24 |
AAATTTCCCT |
ATGATGA |
GAGAGCTGTTAA |
ATGA |
G |
TGGTGA |
TTAGAGGATGGCTGG |
CTGA |
GGGTGAGAGA |
Pab sR24 |
AAGTGGCCCT |
ATGATGA |
GAGAGCTGTTAA |
ATGA |
T |
TGATGA |
TTAGAGGATGGCTGG |
CTGA |
GGGGATAATC |
|
Pho sR25 |
TGAAGGTTCA |
ATGATGA |
AAACTCCCTGAT |
CTGA |
AAAATAAA |
TGATGA |
AGACCGGTTCA |
CTGA |
GATTTCTGCT |
Pfu sR25 |
CAACGATGAG |
ATGATGA |
GAACTCCCTGAT |
CTGA |
GCGG |
TGATGA |
GGACCGGTGAT |
CTGA |
AAAATAGTAA |
Pab sR25 |
TGGGCCTGCG |
ATGATGA |
TAACTCCCTGAC |
CTGA |
AAGG |
TGATGA |
GGACCGGTTCA |
CTGA |
GCTTTGGATT |
|
Pho sR26 |
TAAAAAGGCG |
ATGATGA |
GTGATGGGCGAA |
CTGA |
AAACA |
TGATGA |
AGGTAGGTGATCT |
CTGA |
GCTATCATCG |
Pfu sR26 |
AAAAGAGGCA |
ATGATGA |
GTGATGGGCGAA |
CTGA |
AATAG |
TGATGA |
CGGTAGGTGATCT |
CTGA |
GCCAACTTAC |
Pab sR26 |
GGGCTTGGCG |
ATGATGA |
GTGATGGGCGAA |
CTGA |
GAAG |
TGATGA |
TGGTAGGTGATCT |
CTGA |
GCCAATCCGG |
|
Pho sR27 |
TAGCTTCAGA |
GTGATGA |
GCCCGCGCAGCG |
CTGA |
TAGA |
TGATGA |
AGATTTTAAGTG |
CTGA |
CTTCTAACCT |
Pfu sR27 |
TGTGGTAAAG |
ATGATGA |
ACCCGCGCAGCT |
CTGA |
AGGGA |
TGATGA |
GGATCTTAAGTG |
CTGA |
TCTCTACCAA |
Pab sR27 |
CTTGCCTCGA |
GTGATGA |
GCCCGCGCAGCG |
CTGA |
GCAAGA |
TGATGA |
AGATTTTAAGTG |
CTGA |
CGCCCAATAA |
|
Pho sR28 |
ATACTTAGGA |
ATGATGA |
CCGGTTTCGGGA |
CTGA |
ACGA |
TGATGA |
CACCAGCTATCG |
CTGA |
CCTTGTCTAA |
Pfu sR28 |
AAGCGCAGAG |
ATGATGA |
CCGGTTTCGGAT |
CCGA |
TGGA |
TGAGGA |
CATCAGCTATCG |
CTGA |
TCTCTCATTC |
Pab sR28 |
TAAACCTTGG |
ATGATGA |
CCGGTTTCGGGA |
CTGA |
GCTA |
TGATGA |
CACCAGCTATCG |
CTGA |
CTCCTCTTAC |
|
Pho sR29 |
TTGTGGGCGG |
ATGATGA |
TCCTTGCCCAGC |
CTGA |
GGAG |
TGATGA |
AGTCGGTATTAG |
CTGA |
CGCTGTGTTT |
Pfu sR29 |
GGATTAGCGG |
ATGATGT |
GCCTTGCCCAGC |
CTGA |
AAGG |
TGATGA |
TGTCGGTATTAG |
CTGA |
CGCTTTTCCG |
Pab sR29 |
GCTATGGCGG |
ATGACGA |
GCCTTGCCCAGC |
CTGA |
AAGG |
TGATGA |
TGTCGGTATTAG |
CTGA |
CGCCCAGGAG |
|
Pho sR30 |
ATTATTGTGG |
ATGATGA |
GTAGTCGGAAGG |
CTGA |
GCTGA |
TGATGA |
AGGACGCCCATGT |
CTGA |
TCCTTATCTT |
Pfu sR30 |
ATTATTGTGG |
ATGATGA |
GTAGTCAGAAGG |
CTGA |
GTTGA |
TGATGA |
AGGACGCCCACGC |
CTGA |
CTCTTTTCTA |
Pab sR30 |
ATAATCGTGG |
ATGATGA |
TTAGTCGGAAGG |
CTGA |
AGTG- |
TGATGA |
AGGACGCCCATGG |
CTGA |
ACAAAGCATA |
|
Pho sR31 |
GGGATTAAAG |
ATGATGA |
ACTCGGCAGGTC |
CTGA |
TTCG |
TGATGA |
GGATCTTGAGTG |
CTGA |
TTTACCTTAC |
Pfu sR31 |
TTGGGTTGAG |
ATGATGA |
ACTCGGCAGGTC |
CTGA |
AGGA |
TGATGA |
GGATCTTGAGTG |
CTGA |
TCACCTAACT |
Pab sR31 |
GAAGATGAAG |
ATGATGA |
GCTCGGCAGGTC |
CTGA |
GGAG |
TGATGA |
GGATCTTGAGTG |
CTGA |
TTCACCTTAC |
|
Pho sR32 |
TAAAATGGAG |
ATGATGA |
GCTTGGCCGCTAC |
CCGA |
G |
TGATGA |
GGGCC-AAACTCCGGTG |
CTGA |
TCACATTGCA |
Pfu sR32 |
AAGGAGTGAG |
ATGATGA |
GCTTGGCCGCTTC |
CCGA |
G |
TGGTGA |
GGGTCTAAACTCCGGTG |
CTGA |
TGAAGTCAAA |
Pab sR32 |
AATCCGAGAA |
ATGATGA |
GCTTGGCCGCTAC |
CCGA |
T |
CGATGA |
GGGT-TAAACTCCGGTG |
CTGA |
TCATAGGATG |
|
Pho sR33 |
CCTCTTTGAC |
GTGATGA |
GGAATCGGGGAG |
CTGA |
AGCTA |
TGATGA |
GATCCGCCAACG |
CTGA |
TTTTCCAAAT |
|
Pho sR34 |
ATCCAAGCCG |
ATGAGGA |
TCGTTAGCCACG |
CTGA |
GGA |
TGATGA |
TAAGAGGGTTAG |
CCGA |
GGCTTATTTT |
Pfu sR34 |
TATATGACCG |
ATGAGGA |
GCGTTAGCCACG |
CTGA |
AGA |
TGATGA |
CAAGAGGGTTAG |
CCGA |
GGTCTTCTCT |
Pab sR34 |
ATCCCAGCCG |
ATGAGGA |
CCGTTAGCCACG |
CTGA |
GGA |
TGATGA |
TAAGAGGGTTAG |
CCGA |
GGCTTATTTT |
|
Pho sR35 |
AGACGAAAAA |
ATGATGA |
GTACGGGGCCAC |
CTGA |
GCGG |
TGATGA |
GGTTTCTCCCAAGT |
CTGA |
TTACCTAACC |
Pab sR35 |
ACAAAATAAA |
ATGATGA |
GTACGGGGCCAC |
CTGA |
ATGG |
TGATGA |
GGTTTCTCCCAAGG |
CTGA |
TTACCTTACC |
|
Pho sR36 |
GGTTTGGTGG |
ATGAAGA |
GAGGGTAGGTAG |
CTGA |
TCTG |
TGATGA |
ACTAATCGGCCC |
CTGA |
CACGGGGTGA |
Pfu sR36 |
GAATAGGTGG |
ATGAAGA |
AAGGGTAGGTAG |
CTGA |
GCGG |
TGATGA |
TCTAATCGGCCC |
CTGA |
CACCGCATAA |
Pab sR36 |
GAATTGGTGG |
ATGAGGA |
GAGGGTAGGTAG |
CTGA |
GTTA |
TGATGA |
ACTAATCGGCCC |
CCGA |
CACCTATTGG |
|
Pho sR37 |
GGTTAGAGCG |
ATGATGT |
AGATTAGCCCCGA |
CTGA |
GCGG |
TGATGA |
GGCTGGCCCATCG |
CTGA |
GTCCCAAAAA |
Pfu sR37 |
AAGCTAGGCG |
ATGATGT |
AGATTAGCCCCGA |
CTGA |
GCGG |
TGATGA |
AGCTGGCCCATCG |
CTGA |
GTCTTTAAGA |
Pab sR37 |
AAGCAAAGCG |
ATGATGT |
AGATTAGCCCCGA |
CTGA |
GTTG |
TGATGA |
GGCTGGCCCATCG |
CTGA |
GCTAGATGCT |
|
Pho sR38 |
GGAGTAGGCG |
ATGATTT |
GACTCCGGAAAAG |
CTGA |
ATGA |
TGATGA |
AGTCCAGCCCGA |
ATGA |
GCCGGGGTGA |
Pfu sR38 |
TAGGGAGGCG |
ATGATTT |
GACTCCGGAAAAT |
CTGA |
TCGA |
TGATGA |
AGTCCAGCCCGA |
ATGA |
GCCGAGGTGA |
Pab sR38 |
AAAATAGGCG |
ATGATTT |
GACTCCGGAAAAG |
CTGA |
GCGA |
TGATGA |
AGTCCAGCCCGA |
ATGA |
GCCGAGGTGA |
|
Pho sR39 |
AAAGGGGGTG |
ATGAGGA |
AAATTTCGCTAG |
CTGA |
AGTGAAAGA |
TGATGA |
ATACCCTCGCAA |
CCGA |
GCCTATTTTA |
Pfu sR39 |
AAAATGGGCG |
ATGAAGA |
TAATTTCGCTAG |
CCGA |
AAAATA |
AGATGA |
GGAGTACCCTCGCAA |
CTGA |
GCCTTACTTA |
Pab sR39 |
TAAGTAGGCG |
ATGAAGA |
AAATTTCGCTAG |
CTGA |
AAAG- |
TGATGA |
GTACCCTCGCAA |
CTGA |
GCCTATTTGA |
|
Pho sR40 |
TCCAGAGGCC |
ATGAGGA |
TAGGCGGGTTTG |
CTGA |
CCTCGGGGCG |
TGATGA |
ACCTTTGGAGCC |
CCGA |
GGGCCGGAGA |
Pfu sR40 |
TCCAGAGGCC |
ATGAGGA |
TAGGCGGGTTTG |
CTGA |
CCTCGGGGCG |
TGATGA |
ACCTTTGGAGCC |
CCGA |
GGGCCGGAGA |
Pab sR40 |
TCCAGAGGCC |
ATGAGGA |
CAGGCGGGTTTG |
CTGA |
CCTCGGGGCG |
TGATGA |
ACCTTTGGAGCC |
CCGA |
GGGCCGGAGA |
|
Pho sR41 |
TTGAAGGCGG |
ATGATGA |
AGGCTAATTT |
CGGA |
TTGG |
TGAAGA |
GCCCTATGAGCG |
CTGA |
CGCTATGATT |
Pfu sR41 |
GCACCGACGG |
ATGATGA |
AATGTAAAGA |
CGGA |
AAGA |
TGAAGA |
GCCCTATGAGCG |
CTGA |
CGCCCTTTCT |
Pab sR41 |
ACCTTGGCGG |
ATGATGA |
GCTAGTAA-TT |
CTGA |
GCGA |
TGAAGA |
GCCCTATGAGCG |
CTGA |
CGCCTTGGAA |
|
Pho sR42 |
CTACTTTGTG |
ATGATGA |
TCTTCACGGTACC |
CTGA |
GAGGCGCTCGA |
TGATGA |
GCCCCCTCTCAA |
CTGA |
TCATAGCTTT |
Pfu sR42 |
TTATAGCTTG |
ATGATGA |
ACTTCACGGTACC |
CTGA |
GTTCTAAAAACGA |
TGATGA |
GCCCCCTCTCGT |
CTGA |
TTACCTTTTT |
Pab sR42 |
ATAAGCTATG |
GTGATGA |
TCTTCACGGTACC |
CTGA |
GAGACCCTCGA |
TGATGA |
GCCCCCTCTCAA |
CTGA |
CCTAAATTCT |
|
Pho sR43 |
AGTAATTGAG |
ATGAAGA |
AAAAGCACCTCCA |
CTGA |
GTGA |
TGATGA |
CACGCCCACGGT |
CTGA |
TCAAACTGTT |
Pfu sR43 |
TTGAGGGACG |
ATGAAGA |
GAAAGCACCTCCA |
CGGA |
TAGA |
TGAAGA |
AACGCCCACGGA |
CTGA |
GTCTTCACTC |
Pab sR43 |
AAGTAGGGAG |
ATGAAGA |
GAAAGCACCTCCA |
CTGA |
TTGA |
TGATGA |
AACGCCCACGGT |
CGGA |
TTTCCTTTCC |
|
Pho sR44 |
CGTCAAGGCG |
ATGAGGA |
GATCGGTCTTGT |
CTGA |
AGAA |
TGATGA |
AAGTGGTCACCG |
CTGA |
GCCTTAAGAA |
Pfu sR44 |
AAATTTGGCT |
ATGAGGA |
AATCGGTCTTAG |
CTGA |
GCTTA |
TGATGA |
AAGTGGTCACCG |
CCGA |
GCCAAGTATA |
Pab sR44 |
CAAGAAGGCA |
ATGATGA |
AATCGGTCTTGT |
CCGA |
GGAG |
TGATGA |
TAGTGGTCACCG |
CTGA |
GCCACCAACT |
|
Pho sR45 |
AAAAAACGGG |
ATGAGGA |
AGCCGAGGACAC |
CTGA |
AGGA |
TGATGA |
CTCTTCGCTTCG |
CCGA |
CCGGCGGTGA |
Pfu sR45 |
AAAAGGCGGG |
ATGAGGA |
AGCCGAGGACAC |
CTGA |
TGGA |
TGATGA |
CTCTTCGCTTCG |
CCGA |
CCGGTGGTGA |
Pab sR45 |
AAAAAACGGG |
ATGAGGA |
AGCCGAGGACAC |
CTGA |
ATTG |
TGATGA |
ATCTTCGCTTCG |
CCGA |
CCGAGGTGAT |
|
Pho sR46 |
TCAAAAGGCA |
ATGAGGA |
ATGAATCCAATG |
CTGA |
GCTTAGG |
CAATGA |
TTGGCCCCAGAGTGG |
CCGA |
GCCTTCATAT |
Pfu sR46 |
CACTTAGGCG |
ATGACGA |
CTGAATCCAATG |
CTGA |
GCAAAGG |
CGATGA |
TTGGCCCCAGAGTGG |
CTGA |
GCCCTAATTT |
Pab sR46 |
CTCAAGGGCA |
ATGAGGA |
ATGAATCCAATG |
CTGA |
GCAAAGG |
CAATGA |
TTGACCCCAGAGTGG |
CCGA |
GCCTCTATAT |
|
Pho sR47 |
AGTTCAACCG |
ATGAAGA |
GCCTTTTGGGCC |
CTGA |
GAGA |
TGATGA |
AAGCCCCCCTAT |
CTGA |
GGGGGATAAA |
Pab sR47 |
GAGTATTGGG |
ATGATGA |
AACTCCTTTCGGGCA |
CTGA |
TCCG |
TGATGA |
AGGCCCTCCTAT |
CTGA |
GCATCCCAAC |
|
Pfu sR48 |
CTTTCTCTTC |
TTGATGT |
GGAACCCACCCTTGG |
CTGA |
ATGA |
TGATGA |
GGCCTCGTGGGTT |
CCGA |
AGTTTTTATA |
Pab sR48 |
ATTTTTCTCG |
AGGATGA |
TCCCACCCTTGG |
CTGA |
AGTG |
TGATGA |
TGTCTCGT-GGTT |
CTGA |
GAGAAGTTAG |
|
Pho sR49 |
TTCCTGGGCG |
ATGAAGA |
ACTGGATCCGAG |
CTGA |
TCTCA |
TGATGA |
AGGAGGTTTAAC |
CTGA |
GCCTCCATGA |
Pab sR49 |
TTCCTGGGCG |
ATGAAGA |
ACTGGATCCGAG |
CTGA |
GCTTA |
TGATGA |
TGGAGGTTTAAC |
CTGA |
GCCTTCATAA |
|
Pfu sR50 |
CCTATTGTAG |
ATGATGA |
GGCCATCCCCT |
CTGA |
TCTG |
TGATGA |
GTGGGTGAGCTGG |
CTGA |
TACTTTATTC |
Pab sR50 |
ATAAGGAGGG |
ATGATGA |
GGCCTACCTCG |
CTGA |
GCTG |
TGATGA |
GTGGGTGAGCTGG |
CTGA |
CATTTCATTA |
|
Pfu sR51 |
TATAGCTCCG |
ATGATGA |
GTCTCGCTCGG |
CTGA |
ATGA |
TGATGT |
AGGGCATACTGG |
CTGA |
GGTGATAGTA |
Pab sR51 |
AACCTTGTTG |
ATGATGA |
ACTCGCTTGTTG |
CTGA |
AGGG |
TGATGA |
AGGGCATACTGG |
CTGA |
TTTGGAGGTT |
|
Pfu sR52 |
TAAGGAGAAG |
AGGATGA |
AAAAGAAGAAAAGG |
CTGA |
ATAGA |
TGATGA |
GAGGGGACCTCT |
CTGA |
TGAAAGTTGG |
Pab sR52 |
AGGTAGGGGG |
AGGATGA |
AGAAAAAGTTCAAAGG |
CTGA |
AAGG |
TGATGA |
GAGGGGACCTCG |
CTGA |
TGTTGATCGG |
|
Pho sR53 |
AGTCCGGCCG |
ATGACGA |
AGGTGGGCACTCT |
CCGA |
TT |
TGATGA |
GGATGTGGGGCGAGGAGC |
CAGA |
GGCTTTATAA |
Pfu sR53 |
TAGCGGGCCG |
ATGATGA |
TGGTGGGCACTCG |
CCGA |
T |
TGGTGA |
GG-TAAGGGGCGAGGAGA |
CAGA |
GGCCCAAATA |
Pab sR53 |
GAGCAACCCG |
ATGACGA |
AGGTGGGCACTCT |
CCGA |
CT |
TGATGA |
GGATGTGGGGCGAGGAGC |
CAGA |
GGGTGGTGCG |
|
Pho sR54 |
ATTAGTTGGG |
ATGATGA |
AGTTCGCTAGAA |
CTGA |
GAGG |
TGATGA |
CGCCCAGGGTAT |
CTGA |
CTTTTCCAAT |
Pfu sR54 |
AATAAAAGGG |
ATGATGA |
AGTTCGCTAGAC |
CTGA |
GGAG |
TGATGA |
GCCCTAGGGTAT |
CTGA |
CCACAAACTT |
Pab sR54 |
TTAGATGGGA |
GTGATGA |
GGTTCGCTAGAG |
CTGA |
AGGAT |
TGATGA |
TGAGACCCAGGGTAT |
CTGA |
CCGCATTAGA |
|
Pho sR55 |
TTGTAAACCG |
ATGATGT |
GTGTCATCCCTG |
CTGA |
AAGGGGTCGA |
TGATGA |
TGTTTTGATCCCCAT |
CTGA |
GGTGCTGGAA |
Pfu sR55 |
TTAGTA-ACCG |
ATGAAGA |
GTGTCATCCCTG |
CTGA |
AACGGGGTCGA |
TGATGA |
GGTATAGTCCCCAC |
CTGA |
GGTGTTTCCA |
Pab sR55 |
AAAACCACCG |
ATGATGA |
GTGTCATCCCTG |
CTGA |
AATCGGGGTCGA |
TGATGA |
CGTAAATTCCCCAC |
CTGA |
GGTGTTTAAT |
|
Pfu sR56 |
GTTTGGGCCG |
ATGAAGA |
GCGAGCCCGGCC |
CTGA |
GGAGA |
TGATGA |
AAGCTACCACTT |
CTGA |
GGTCATCAAC |
Pab sR56 |
TTAATATCCG |
ATGAGGA |
GCGAGCCCGGCC |
CTGA |
GCGA |
TGATGA |
GAGCTACCACTA |
CTGA |
GGTCACCCAA |
|
Pab sR57 |
ATAATTAGCG |
ATGATGA |
ATTCACGAAGG |
ATGA |
GG |
TGAAGA |
GCCTAATATGGGAGGCCTCG |
CTGA |
GGGTTCTCGG |
|
5' and 3' ends of sRNAs were not determined experimentally (an invariant
10 nucleotides of sequence flanking the C box and D boxes is displayed).
Nucleotide positions not conserved with at least one other Pyrococcus
sRNA homolog are displayed in red.