Supplemental Table 5C. Pyrococcus horikoshii sRNA Genomic Loci

Coordinates for main chromosome of Pho, original 6/98 release of genome sequence (same as version available at NCBI 4/2000).

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Name Start Coord End Coord Strand Notes
sR46 49019 49079 +  
sR45 55211 55265 +  
sR14 56243 56188 - 59 nt from sR22
sR22 56302 56359 +  
sR32 58901 58957 +  
sR21 115144 115198 +  
sR9 215775 215720 - 109 nt from sR2
sR2 215884 215940 +  
sR49 220695 220750 +  
sR13 230055 230109 +  
sR43 236067 236012 -  
sR31 243126 243180 +  
sR5 257162 257108 -  
sR23 262665 262720 +  
sR47 266350 266296 -  
sR6 420719 420665 -  
sR36 530081 530027 -  
sR8 535539 535484 -  
sR11 544644 544589 -  
sR40 597272 597332 + within tRNA Trp intron
sR41 630833 630885 +  
sR17 689901 689953 +  
sR1 762168 762222 +  
sR37 806817 806761 -  
sR35 902264 902320 +  
sR55 939374 939311 -  
sR30 963521 963465 -  
sR10 1013073 1013126 +  
sR38 1016391 1016333 -  
sR53 1047513 1047572 +  
sR24 1057034 1056980 -  
sR3 1099694 1099748 +  
sR18 1131166 1131223 +  
sR54 1163749 1163695 -  
sR15 1212025 1212080 +  
sR16 1274610 1274666 +  
sR25 1290720 1290663 -  
sR7 1316443 1316499 +  
sR44 1327988 1327934 -  
sR26 1328943 1328887 -  
sR20 1401921 1401976 +  
sR39 1411661 1411724 +  
sR19 1433294 1433356 +  
sR4 1478510 1478564 +  
sR28 1484845 1484791 -  
sR27 1520040 1520114 +  
sR29 1531374 1531320 -  
sR42 1615276 1615214 -  
sR33 1623026 1622971 -  
sR34 1732053 1732000 - 1 nt from sR12
sR12 1732054 1732108 +  

Locus coordinates include 5' flanking sequence (4 nt upstream of C box) and 3' flanking sequence (2 nt downstream of D box). These are only general estimates of bounds based on sRNA molecules characterized from other species.