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sR1 | ATAAATGGCA | ATGATGA | AGCCTTCCGCAC | CTGA | ACGG | TGAGGA | GTGGACGGCTTC | CTGA | GCCTCACTCC |
sR2 | GAGAAAAGGG | ATGATGA | GTTTTTCCCTCACT | CTGA | GCCG | TGATGA | GGAGCCGATGCT | CTGA | CCTCTGCCAT |
sR3 | TATGAAGGCG | ATGATGA | GTAGCAAGCCAC | CTGA | CCTA | TGATGA | GGTGAACACCCC | CTGA | GCCAATTTCA |
sR4 | GAAGGATGGG | ATGATGA | AGGAGATTTCGG | CCGA | AAGG | TGAGGA | AACTCGCATGGG | CTGA | CCTTTCTCAG |
sR5 | AAGACAATAG | ATGATGA | GCGCCATCGATG | CTGA | GGAG | TGATGA | CCGGATTCCTGG | CTGA | TCTTTATTCT |
sR6 | CCAATGAGGA | ATGATGA | GATTTGCTACCA | CTGA | GCAG | TGATGA | GCCCTGCCGTTA | CTGA | CCTTTTACTA |
sR7 | ATTATAAGGG | ATGATGA | GCCTCCATCCAAG | CTGA | GCAAG | TGATGA | GTGCACATCAGG | CTGA | ACCTTTTTAT |
sR8 | TTGAAAGGCG | ATGATGA | GCTCCATCCCTAT | CTGA | GTTG | TGATGA | CTGTAGCGCGCT | CTGA | GCTACAGGCT |
sR9 | GCCTACAGTT | ATGATGA | ACTTTTGCTTTG | CTGA | TGTGG | TGATGA | GCACGCCCTTCG | CTGA | TACTCTCTCG |
sR10 | AACGGTAGCG | ATGATGA | ACTACTCCCGG | CTGA | GCTG | TGATGA | ACCACCTACCGG | CTGA | GGTGGAAACA |
sR11 | CTTTAATGGG | ATGATGA | CTTTGCCGAGTG | CTGA | GGAAG | TGATGA | GTAAACAGTCGC | CTGA | CCCCCTGCTT |
sR12 | ATCGGCTGGG | ATGATGA | GCGTTTACCGGT | CTGA | GCTG | TGATGA | CATCGGCACTGT | CTGA | CTAGTAGTCA |
sR13 | TATTACTTGA | ATGATGA | GATGGCGGATTG | CTGA | GCTG | TGATGA | AGACCTTAGGGT | CTGA | CTTCCCAAAA |
sR14 | AGACGATCCG | ATGATGA | TGGATCAACCGG | CTGA | GTGG | TGATGA | AGTCCGCATCAC | CTGA | GGCTCTCAAG |
sR15 | ATGTGTAGTG | ATGATGA | TTAAACCCGTTG | CTGA | GAGG | TGATGA | GGGGACCGACTAG | CTGA | ACAACACTTA |
sR16 | GTTTCCATAG | ATGATGA | GCCTTCCCCTCAC | CTGA | GTGG | TGATGA | GCACACCGGTAGG | CTGA | GGGTGATATT |
sR17 | ACGGTTTGCG | ATGATGA | AAGCGAACTGCA | CTGA | AAAG | TGATGA | GAGGGCCTCG | CTGA | GCGGTGATGT |
sR18 | TCTATTTTTG | ATGATGA | TACAGCCAGGACC | CTGA | TGGGA | TGATGA | GTGGTGGGCTTAG | CTGA | TGTTGCCGTT |
sR19 | TGGCGGGCAT | ATGATGA | GCTTTCCCTACGGC | CCGA | GCTCACG | CGATGA | GGAATACAGCCAGGG | CTGA | TTTCGGTGAT |
sR20 | GAGGACCGCG | ATGATGA | AGCCTCGATTGG | CTGA | ATCG | CGATGA | TTGGGAGGGACTTGG | CCGA | GCGGTGGTTA |
sR21 | TAGCTTGCCA | ATGATGA | GACCGGCACTAA | CTGA | GTTG | TGATGA | GCACTCGGTTGG | CTGA | GACTGAAAAC |
sR22 | GAAATGCCCG | ATGATGC | CAACAGGGTAGCTG | CCGA | GG | CGATGA | GGAAGCCGTTCCAGA | CTGA | GGGCGTAGCA |
sR23 | ATACTAAAAG | ATGATGA | ATCTGGAGCCCC | CTGA | GTGA | TGATGA | GCAGTCTGCGGAG | CTGA | TATCATGATT |
sR24 | AAGTGGCCCT | ATGATGA | GAGAGCTGTTAA | ATGA | T | TGATGA | TTAGAGGATGGCTGG | CTGA | GGGGATAATC |
sR25 | TGGGCCTGCG | ATGATGA | TAACTCCCTGAC | CTGA | AAGG | TGATGA | GGACCGGTTCA | CTGA | GCTTTGGATT |
sR26 | GGGCTTGGCG | ATGATGA | GTGATGGGCGAA | CTGA | GAAG | TGATGA | TGGTAGGTGATCT | CTGA | GCCAATCCGG |
sR27 | CTTGCCTCGA | GTGATGA | GCCCGCGCAGCG | CTGA | GCAAGA | TGATGA | AGATTTTAAGTG | CTGA | CGCCCAATAA |
sR28 | TAAACCTTGG | ATGATGA | CCGGTTTCGGGA | CTGA | GCTA | TGATGA | CACCAGCTATCG | CTGA | CTCCTCTTAC |
sR29 | GCTATGGCGG | ATGACGA | GCCTTGCCCAGC | CTGA | AAGG | TGATGA | TGTCGGTATTAG | CTGA | CGCCCAGGAG |
sR30 | ATAATCGTGG | ATGATGA | TTAGTCGGAAGG | CTGA | AGTG | TGATGA | AGGACGCCCATGG | CTGA | ACAAAGCATA |
sR31 | GAAGATGAAG | ATGATGA | GCTCGGCAGGTC | CTGA | GGAG | TGATGA | GGATCTTGAGTG | CTGA | TTCACCTTAC |
sR32 | AATCCGAGAA | ATGATGA | GCTTGGCCGCTAC | CCGA | T | CGATGA | GGGTTAAACTCCGGTG | CTGA | TCATAGGATG |
sR34 | ATCCCAGCCG | ATGAGGA | CCGTTAGCCACG | CTGA | GGA | TGATGA | TAAGAGGGTTAG | CCGA | GGCTTATTTT |
sR35 | ACAAAATAAA | ATGATGA | GTACGGGGCCAC | CTGA | ATGG | TGATGA | GGTTTCTCCCAAGG | CTGA | TTACCTTACC |
sR36 | GAATTGGTGG | ATGAGGA | GAGGGTAGGTAG | CTGA | GTTA | TGATGA | ACTAATCGGCCC | CCGA | CACCTATTGG |
sR37 | AAGCAAAGCG | ATGATGT | AGATTAGCCCCGA | CTGA | GTTG | TGATGA | GGCTGGCCCATCG | CTGA | GCTAGATGCT |
sR38 | AAAATAGGCG | ATGATTT | GACTCCGGAAAAG | CTGA | GCGA | TGATGA | AGTCCAGCCCGA | ATGA | GCCGAGGTGA |
sR39 | TAAGTAGGCG | ATGAAGA | AAATTTCGCTAG | CTGA | AAAG | TGATGA | GTACCCTCGCAA | CTGA | GCCTATTTGA |
sR40 | TCCAGAGGCC | ATGAGGA | CAGGCGGGTTTG | CTGA | CCTCGGGGCG | TGATGA | ACCTTTGGAGCC | CCGA | GGGCCGGA |
sR41 | ACCTTGGCGG | ATGATGA | GCTAGTAATT | CTGA | GCGA | TGAAGA | GCCCTATGAGCG | CTGA | CGCCTTGGAA |
sR42 | ATAAGCTATG | GTGATGA | TCTTCACGGTACC | CTGA | GAGACCCTCGA | TGATGA | GCCCCCTCTCAA | CTGA | CCTAAATTCT |
sR43 | AAGTAGGGAG | ATGAAGA | GAAAGCACCTCCA | CTGA | TTGA | TGATGA | AACGCCCACGGT | CGGA | TTTCCTTTCC |
sR44 | CAAGAAGGCA | ATGATGA | AATCGGTCTTGT | CCGA | GGAG | TGATGA | TAGTGGTCACCG | CTGA | GCCACCAACT |
sR45 | AAAAAACGGG | ATGAGGA | AGCCGAGGACAC | CTGA | ATTG | TGATGA | ATCTTCGCTTCG | CCGA | CCGAGGTGAT |
sR46 | CTCAAGGGCA | ATGAGGA | ATGAATCCAATG | CTGA | GCAAAGG | CAATGA | TTGACCCCAGAGTGG | CCGA | GCCTCTATAT |
sR47 | GAGTATTGGG | ATGATGA | AACTCCTTTCGGGCA | CTGA | TCCG | TGATGA | AGGCCCTCCTAT | CTGA | GCATCCCAAC |
sR48 | ATTTTTCTCG | AGGATGA | TCCCACCCTTGG | CTGA | AGTG | TGATGA | TGTCTCGTGGTT | CTGA | GAGAAGTTAG |
sR49 | TTCCTGGGCG | ATGAAGA | ACTGGATCCGAG | CTGA | GCTTA | TGATGA | TGGAGGTTTAAC | CTGA | GCCTTCATAA |
sR50 | ATAAGGAGGG | ATGATGA | GGCCTACCTCG | CTGA | GCTG | TGATGA | GTGGGTGAGCTGG | CTGA | CATTTCATTA |
sR51 | AACCTTGTTG | ATGATGA | ACTCGCTTGTTG | CTGA | AGGG | TGATGA | AGGGCATACTGG | CTGA | TTTGGAGGTT |
sR52 | AGGTAGGGGG | AGGATGA | AGAAAAAGTTCAAAGG | CTGA | AAGG | TGATGA | GAGGGGACCTCG | CTGA | TGTTGATCGG |
sR53 | GAGCAACCCG | ATGACGA | AGGTGGGCACTCT | CCGA | CT | TGATGA | GGATGTGGGGCGAGGAGC | CAGA | GGGTGGTGCG |
sR54 | TTAGATGGGA | GTGATGA | GGTTCGCTAGAG | CTGA | AGGAT | TGATGA | TGAGACCCAGGGTAT | CTGA | CCGCATTAGA |
sR55 | AAAACCACCG | ATGATGA | GTGTCATCCCTG | CTGA | AATCGGGGTCGA | TGATGA | CGTAAATTCCCCAC | CTGA | GGTGTTTAAT |
sR56 | TTAATATCCG | ATGAGGA | GCGAGCCCGGCC | CTGA | GCGA | TGATGA | GAGCTACCACTA | CTGA | GGTCACCCAA |
sR57 | ATAATTAGCG | ATGATGA | ATTCACGAAGG | ATGA | GG | TGAAGA | GCCTAATATGGGAGGCCTCG | CTGA | GGGTTCTCGG |
None of the Pab predictions have been verified as RNA transcripts
by primer extension. Exceptions to consensus box features shown in red.
Predicted methylation guide regions with Watson-Crick/G-U base pairings
to target RNAs shown in green
(only those not found in Pho are shown in this alignment).
Predicted terminal stem pairings shown in blue.
5' and 3' ends of sRNAs were not determined experimentally (an invariant
10 nucleotides of sequence flanking the C box and D boxes is displayed).
The gap in numbering for sR33 is intentional (a Pab homolog was
not found).