Sulfolobus acidocaldarius sRNAs

Name		C Box		D' Box		C' Box		D Box
sR1	`CAG`	`TTGATGA`	`GAAGTTAAAAAA`	`GCGA`	`T`	`GGATGA`	`GCTTAACTCCCATGGT`	`CTGA`	`TAAC`
sR2	`GA`	`GTGATGA`	`GACGAGCGCTAA`	`CAGA`	`GAGAG`	`TGAAGA`	`GGTCACTGCGAA`	`CTGA`	`AGAAA`
sR3	`AGG`	`ATGACGA`	`GACCCAAAATA`	`TTGA`	`A`	`CGATGA`	`TATAACCTGTCTCGG`	`CTGA`	`TCAGT`
sR4	`G`	`TTGATGA`	`GCACATTCTTTT`	`CTGA`	`TTTAA`	`TGAAGA`	`AAGTGGCCAGGT`	`CTGA`	`GGTAG`
sR5	`GAA`	`ATGATGA`	`ATGGTCGACGGAA`	`CGGA`	`CCTA`	`TGAAGA`	`ATTGTTGCCGGA`	`CTGA`	`CAAAC`
sR6	`GG`	`ATGATGA`	`CCAAATAGA`	`CTGA`	`A`	`AGATGA`	`AGAAATGCACCTCAA`	`CTGA`	`CTAAA`
sR7	`G`	`ATGATGA`	`CAAAGAGCCGAA`	`TGGA`	`T`	`TAGTGA`	`CATCTAATTTTGTGGGCAGCCA`	`CTGA`	`TAGAG`
sR8	`G`	`ATGATGA`	`AGCCCGCCATCAA`	`CAGA`	`TAAG`	`TGAAGA`	`GGGAACCCGAGG`	`CTGA`	`GAAT`
sR9	`GTTAAAATA`	`ATGATGA`	`CTAACTCCAATA`	`CTGA`	`CCAA`	`TGATGT`	`CGTAACCCGAAA`	`CTGA`	`ATAAA`
sR10	`GA`	`ATGATGT`	`GGAATCCGGGAT`	`CTGA`	`GAA`	`TGATGA`	`CAAAAAGCGCGAGCG`	`CTGA`	`TTATA`
sR11	`GAAT`	`GTGATGA`	`TGGGTCGATGTTA`	`CTGA`	`TTAGT`	`TGATGA`	`GATTATCTCCGG`	`CTGA`	`GAAT`
sR12	`GA`	`ATGAAGA`	`ACCCAACCTTAT`	`CTGA`	`GGTTA`	`TGATGA`	`CAGGTTGTTCGT`	`CAGA`	`TCGATGTGAG`
sR13	`AGG`	`ATGATGT`	`ACTTTCACCCTCA`	`CTGA`	`AAGG`	`TGAGGA`	`TGAGTCCGACTA`	`CTGA`	`CGCAA`
sR14	`GCT`	`GTGAAGA`	`CGCTAGACTTAGA`	`CTGA`	`CTCA`	`TGATGA`	`AGGGCCAAAGCT`	`CAGA`	`GCAAAC`
sR15	`A`	`GTGATGA`	`GGAACCAACGAGAG`	`CTAG`	`TT`	`TGATGG`	`CTTCGACGCTCTGCT`	`CTGA`	`AA`
sR16	`GA`	`ATGAAGA`	`CGTTCCACCCGA`	`GCGA`	`G`	`TGATGA`	`GCGAAACGGTTAATA`	`CTGA`	`TGATG`
sR17	`AGAA`	`ATGAAGA`	`GTAAAAAACCGG`	`CTGA`	`GATAAG`	`TGATGA`	`CGACGTCTCGCA`	`CTGA`	`TC`
sR18	`AA`	`GTGATGA`	`CAGAACCCCGGC`	`TTGA`	`A`	`AGATGA`	`TAGAGCCGTGTGAGAA`	`CTGA`	`TCAAT`
sR19	`G`	`ATGATGA`	`ACGCGGAGTACGA`	`CTGA`	`GGTA`	`TGATGT`	`AGTGGTCCTCGG`	`CTGA`	`GAAAA`
sR20	`A`	`ATGATGA`	`AAAGAGGGTCGC`	`ATGA`	`TAGA`	`TGATGA`	`CCGCTGGAAATA`	`CTGA`	`AAT`
sR21	`G`	`ATGATGA`	`TTTTCACTGGGCAGGGC`	`AAGA`	`TT`	`TGATGA`	`TTGAGCCCTGGATAA`	`CTGA`	`TTATG`
sR22	`CTGAA`	`ATGATGA`	`ATTTTAGGGGAGC`	`CTGA`	`TAGG`	`TGAGGA`	`TGCGGTTACTCG`	`CTGA`	`AGATA`
sR23	`AC`	`ATGATGT`	`GACTCTGCGGAA`	`CTGA`	`CGTTT`	`TGATGA`	`GAGAAACAGGGT`	`CAGA`	`GAA`
sR24		`GTGATGA`	`GCCTTACAGGG`	`CTGA`	`GCTATA`	`TGATGT`	`CCTGGATCCTTG`	`CTGA`	`TAGTT`
sR25	`A`	`ATGATGA`	`TTATAGCGGACA`	`CTGA`	`ACA`	`TGATGA`	`CGCTGAGCGTA`	`CTGA`	`TAACT`
sR26	`CGGCTA`	`ATGATGA`	`GGGTTAAAAGCG`	`CTTA`	`TTGA`	`TGATGA`	`TGAACCTCTACCTA`	`CTGA`	`AGAGCC`
sR27	`G`	`ATGTTGA`	`ACGATCCGAACA`	`CTGA`	`GTCAGTGTTG`	`TGATGA`	`AGAACTTTTTG`	`CTGA`	`AT`
sR28	`GGTTC`	`ATGATGA`	`GCTTGACCGGGA`	`ATGA`	`ATGG`	`TGATGA`	`AAGGCACGTGTG`	`CTGA`	`TTTTT`
sR29	`GA`	`GTGATGA`	`TGGAGTCGCGAC`	`CTGA`	`CTGG`	`TGATGT`	`AGCTGAGCACT`	`CTGA`	`TATGA`

All of the sRNAs were biochemically isolated, cloned, and sequenced as described in Omer et al.. Exceptions to consensus box features shown in red. Predicted
methylation guide regions with Watson-Crick/G-U base pairings to target RNAs shown in green.