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sR1 | AAAGAAGGCG | ATGATGA | AGCCTTCCGCAC | CTGA | ATGA | TGAGGA | GTGGACGGCTTC | CTGA | GCCTACTCCT |
sR2 | AAAAAGAGGG | ATGATGA | GTTTTTCCCTCACT | CTGA | GGAG | TGATGA | GGAGCCGATGCA | CTGA | CCTCGATCAT |
sR3 | AATTGTGGCG | ATGATGA | ATAGCAAGCCAG | CTGA | AGAG | TGATGA | AGTGAACACCCC | CTGA | GCCTACCTAA |
sR4 | CCGAGTTGGG | ATGATGA | GGGAGATTTCGG | CCGA | GTGG | TGAGGA | GACTCGCATGGG | CTGA | CCTTTCTAAG |
sR5 | ATAAGGTGTG | ATGATGA | ACGCCATCGATA | CTGA | GATA | TGATGA | CCGGATTCCTGG | CTGA | TTTCTTTTAT |
sR6 | TGGAAATGGG | ATGATGA | AGTTTGCTACCC | CTGA | AGAA | TGATGA | ACCCTGCCGTTA | CTGA | CCATTTAGCT |
sR7 | GTAATCCGGG | ATGATGA | ACCTCCATCCCAA | CTGA | ATAAA | TGATGA | ATGCACATCAGG | CTGA | CATTACCTTT |
sR8 | CGAATAGGCG | ATGATGA | GCTCCATCCCTAC | CTGA | GTTG | TGATGA | ATGTAGCGCGCT | CTGA | GCAACCCTTA |
sR9 | CCGACAGGGG | ATGAAGA | GCTTTTGCTTTG | CTGA | GCAGA | TGATGA | CCACGCCCTTCG | CTGA | CCTGCTATTT |
sR10 | TTAGCGACTA | ATGATGA | ACTACTCCCGG | CTGA | GGGG | TGATGA | ACCACCTACCGG | CTGA | GGTGAAAGCA |
sR11 | CTCTAGCGGG | ATGATGA | CTTTGCCGAGTG | CTGA | GCTGG | TGATGA | GTAAACAGTCGT | CTGA | CTTTCCCTTT |
sR12 | ATCGGCTTGG | ATGATGA | GCGTTTACCGGT | CTGA | GCTG | TGATGA | TATCGGCACTGT | CTGA | CTAGTAATCT |
sR13 | TCATTGTTGG | GTGATGA | GATGGCGGATTG | CTGA | GAGA | TGATGA | GGACCTTAGGGG | CTGA | TTAAATTTCG |
sR14 | CTATTAACCA | ATGATGA | CGGATCAACCGG | CTGA | TCGAA | TGATGA | CGTCCGCATCAC | CTGA | GGGTTTCAAG |
sR15 | AGATGAAGAG | ATGATGA | GTAAACCCGTTG | CTGA | GCGG | TGATGA | GAGGATCGACTAG | CTGA | ACAACATCTT |
sR16 | ATCAAGTCTG | ATGATGA | ACCTTCCCCTCAC | CTGA | AAGG | TGATGA | GCACACCGGTAGG | CTGA | GGGTGATAAT |
sR17 | ACGGTCTGCG | ATGATGA | GAGCGAACTGCA | CTGA | AAAG | TGATGA | CAGGGCCTTG | CTGA | GCGGTGATCG |
sR18 | TTTATTTTTA | ATGATGA | AACAGCCAGGACC | CTGA | TGGGA | TGATGA | GTGGTGGGCTTAG | CTGA | TGTTGCGGTA |
sR19 | TGGCGGGCTC | GTGATGA | GCTTTCCCTACGGC | CCGA | GCTTAGG | CGATGA | GGAATACAGCCAGGG | CTGA | TTTTGGTGAT |
sR20 | ATGAATGGCG | ATGATGA | GGCCTCGATTGG | CTGA | AT | CGATGA | TTGAGAGGGACTTGG | CTGA | GCGGTGATTA |
sR21 | TACCATGCCG | ATGATGA | GACCGGTACTGG | CCGA | AGTA | TGATGA | GCACTCGGTTAG | CTGA | GGCCTGAAAA |
sR22 | GGAACATCCG | ATGATGG | GAACAGGGTAGCTG | CCGA | GT | TGATGA | GGAAGCCGTTCCAGA | CTGA | GGAAAGAAAA |
sR23 | TCCTATTAAG | ATGATGA | ATCTGGAGCCCC | CTGA | TCGG | TGATGA | TCAGTCTGCGGAG | CTGA | TAACATGATT |
sR24 | AAGTTACCCT | ATGATGA | GAGAGCTGTTAA | ATGA | G | CGGTGA | TTAAAGGATGGCTGG | CTGA | GGGTGAGATA |
sR25 | TGAAGGTTCA | ATGATGA | AAACTCCCTGAT | CTGA | AAAATAAA | TGATGA | AGACCGGTTCA | CTGA | GATTTCTGCT |
sR26 | TAAAAAGGCG | ATGATGA | GTGATGGGCGAA | CTGA | AAACA | TGATGA | AGGTAGGTGATCT | CTGA | GCTATCATCG |
sR27 | TAGCTTCAGA | GTGATGA | GCCCGCGCAGCG | CTGA | TAGA | TGATGA | AGATTTTAAGTG | CTGA | CTTCTAACCT |
sR28 | ATACTTAGGA | ATGATGA | CCGGTTTCGGGA | CTGA | ACGA | TGATGA | CACCAGCTATCG | CTGA | CCTTGTCTAA |
sR29 | TTGTGGGCGG | ATGATGA | TCCTTGCCCAGC | CTGA | GGAG | TGATGA | AGTCGGTATTAG | CTGA | CGCTGTGTTT |
sR30 | ATTATTGTGG | ATGATGA | GTAGTCGGAAGG | CTGA | GCTGA | TGATGA | AGGACGCCCATGT | CTGA | TCCTTATCTT |
sR31 | GGGATTAAAG | ATGATGA | ACTCGGCAGGTC | CTGA | TTCG | TGATGA | GGATCTTGAGTG | CTGA | TTTACCTTAC |
sR32 | TAAAATGGAG | ATGATGA | GCTTGGCCGCTAC | CCGA | G | TGATGA | GGGCCAAACTCCGGTG | CTGA | TCACATTGCA |
sR33 | CCTCTTTGAC | GTGATGA | GGAATCGGGGAG | CTGA | AGCTA | TGATGA | GATCCGCCAACG | CTGA | TTTTCCAAAT |
sR34 | ATCCAAGCCG | ATGAGGA | TCGTTAGCCACG | CTGA | GGA | TGATGA | TAAGAGGGTTAG | CCGA | GGCTTATTTT |
sR35 | AGACGAAAAA | ATGATGA | GTACGGGGCCAC | CTGA | GCGG | TGATGA | GGTTTCTCCCAAGT | CTGA | TTACCTAACC |
sR36 | GGTTTGGTGG | ATGAAGA | GAGGGTAGGTAG | CTGA | TCTG | TGATGA | ACTAATCGGCCC | CTGA | CACGGGGTGA |
sR37 | GGTTAGAGCG | ATGATGT | AGATTAGCCCCGA | CTGA | GCGG | TGATGA | GGCTGGCCCATCG | CTGA | GTCCCAAAAA |
sR38 | GGAGTAGGCG | ATGATTT | GACTCCGGAAAAG | CTGA | ATGA | TGATGA | AGTCCAGCCCGA | ATGA | GCCGGGGTGA |
sR39 | AAAGGGGGTG | ATGAGGA | AAATTTCGCTAG | CTGA | AGTGAAAGA | TGATGA | ATACCCTCGCAA | CCGA | GCCTATTTTA |
sR40 | TCCAGAGGCC | ATGAGGA | TAGGCGGGTTTG | CTGA | CCTCGGGGCG | TGATGA | ACCTTTGGAGCC | CCGA | GGGCCGGAGA |
sR41 | TTGAAGGCGG | ATGATGA | AGGCTAATTT | CGGA | TTGG | TGAAGA | GCCCTATGAGCG | CTGA | CGCTATGATT |
sR42 | CTACTTTGTG | ATGATGA | TCTTCACGGTACC | CTGA | GAGGCGCTCGA | TGATGA | GCCCCCTCTCAA | CTGA | TCATAGCTTT |
sR43 | AGTAATTGAG | ATGAAGA | AAAAGCACCTCCA | CTGA | GTGA | TGATGA | CACGCCCACGGT | CTGA | TCAAACTGTT |
sR44 | CGTCAAGGCG | ATGAGGA | GATCGGTCTTGT | CTGA | AGAA | TGATGA | AAGTGGTCACCG | CTGA | GCCTTAAGAA |
sR45 | AAAAAACGGG | ATGAGGA | AGCCGAGGACAC | CTGA | AGGA | TGATGA | CTCTTCGCTTCG | CCGA | CCGGCGGTGA |
sR46 | TCAAAAGGCA | ATGAGGA | ATGAATCCAATG | CTGA | GCTTAGG | CAATGA | TTGGCCCCAGAGTGG | CCGA | GCCTTCATAT |
sR47 | AGTTCAACCG | ATGAAGA | GCCTTTTGGGCC | CTGA | GAGA | TGATGA | AAGCCCCCCTAT | CTGA | GGGGGATAAA |
sR49 | TTCCTGGGCG | ATGAAGA | ACTGGATCCGAG | CTGA | TCTCA | TGATGA | AGGAGGTTTAAC | CTGA | GCCTCCATGA |
sR53 | AGTCCGGCCG | ATGACGA | AGGTGGGCACTCT | CCGA | TT | TGATGA | GGATGTGGGGCGAGGAGC | CAGA | GGCTTTATAA |
sR54 | ATTAGTTGGG | ATGATGA | AGTTCGCTAGAA | CTGA | GAGG | TGATGA | CGCCCAGGGTAT | CTGA | CTTTTCCAAT |
sR55 | TTGTAAACCG | ATGATGT | GTGTCATCCCTG | CTGA | AAGGGGTCGA | TGATGA | TGTTTTGATCCCCAT | CTGA | GGTGCTGGAA |
sR58 | AGAAAGCCCG | ATGATTG | GAAGTGGAGTGAG | CTGA | TGCA | TGATGA | CCGACTTCCCT | CTGA | GGGCTTTTTA |
sR59 | TCTAAGGGCG | ATGATGT | AGGGTGGCGTCC | CTGA | CATA | TGATGA | AGCCTGCGATGG | CTGA | GCAAATTATT |
sR60 | TATCATCGGG | ATGAGGA | GTTCAGCCTAAG | CTGA | GACA | TGATGA | GGGAGTGACGGA | CTGA | CCGTTGGCTA |
None of the Pho predictions have been verified as RNA transcripts by primer extension. Exceptions to consensus box features shown in red. Predicted methylation guide regions with Watson-Crick/G-U base pairings to target RNAs shown in green. Predicted terminal stem pairings shown in blue. 5' and 3' ends of sRNAs were not determined experimentally (an invariant 10 nucleotides of sequence flanking the C box and D boxes is displayed). The gaps in numbering for sR48, sR50, sR51, and sR52 are intentional (no Pho homologs were found). sR58-sR60 were first described by Gaspin et al. as sR38, sR34, sR39.