Pyrococcus furiosus sRNA Genomic Loci

Coordinates for main chromosome of Pfu, 5/99 release of genome sequence.

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Name Start Coord End Coord Strand Notes
sR46 9297 9237 -  
sR21 10963 10909 -  
sR9 163931 163876 - 130 nt from sR2
sR2 164062 164118 +  
sR5 272693 272637 -  
sR23 278285 278341 +  
sR36 329170 329116 -  
sR8 334067 334012 -  
sR48 361376 361318 -  
sR6 477349 477405 +  
sR11 497425 497370 -  
sR17 531855 531802 -  
sR59 552381 552327 -  
sR37 581261 581205 -  
sR1 678049 678103 +  
sR18 808510 808453 -  
sR24 823496 823550 +  
sR56 893919 893864 -  
sR40 937474 937415 - within tRNA Trp intron
sR38 998550 998608 +  
sR10 1001864 1001811 -  
sR30 1035617 1035561 -  
sR53 1130394 1130451 +  
sR41 1155596 1155544 -  
sR3 1226580 1226634 +  
sR55 1245430 1245493 +  
sR26 1288109 1288165 + 9 nt from sR60
sR60 1288174 1288228 +  
sR44 1289922 1289977 +  
sR7 1301534 1301478 -  
sR16 1329514 1329570 +  
sR25 1345505 1345452 -  
sR54 1374433 1374487 + 34 nt from sR50
sR50 1374521 1374575 +  
sR15 1413400 1413455 +  
sR20 1484449 1484504 +  
sR39 1493096 1493156 +  
sR58 1495225 1495170 -  
sR19 1520327 1520390 +  
sR27 1550991 1550936 -  
sR28 1611780 1611834 +  
sR4 1635657 1635603 -  
sR52 1665029 1665086 +  
sR29 1666260 1666206 -  
sR42 1747691 1747627 -  
sR13 1779112 1779057 -  
sR31 1798441 1798387 -  
sR43 1805493 1805551 +  
sR12 1849495 1849441 - 49 nt from sR34
sR34 1849544 1849597 +  
sR51 1881797 1881850 +  
sR32 1886958 1886901 -  
sR22 1889548 1889491 - 40 nt from sR14
sR14 1889588 1889642 +  
sR45 1891930 1891876 -  

Locus coordinates include 5' flanking sequence (4 nt upstream of C box) and 3' flanking sequence (2 nt downstream of D box). These are only general estimates of bounds based on sRNA molecules characterized from other species.