Pyrococcus abyssi sRNA Genomic Loci

Coordinates for main chromosome of Pab, 6/99 release of genome sequence.

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Name Start Coord End Coord Strand Notes
sR46 57376 57438 +  
sR45 64245 64299 +  
sR14 65278 65224 - 56 nt from sR22
sR22 65334 65391 +  
sR32 67950 68006 +  
sR51 73088 73034 -  
sR21 127068 127122 +  
sR9 230517 230462 - 116 nt from sR2
sR2 230633 230689 +  
sR49 235441 235496 +  
sR13 245976 246030 +  
sR43 250988 250934 -  
sR31 258067 258121 +  
sR52 316964 317022 +  
sR29 318181 318127 -  
sR27 401671 401616 -  
sR42 414948 414886 -  
sR28 463661 463715 +  
sR4 473236 473182 -  
sR19 521525 521463 -  
sR58 541771 541825 +  
sR39 543915 543861 -  
sR20 553720 553663 -  
sR26 631519 631574 + 11 nt from sR60
sR60 631585 631639 +  
sR44 636704 636758 +  
sR57 639845 639904 +  
sR7 648226 648170 -  
sR25 675409 675462 +  
sR16 693877 693821 -  
sR15 762600 762545 -  
sR30 893400 893455 +  
sR55 910501 910565 +  
sR35 949261 949205 -  
sR54 955310 955252 -  
sR56 960310 960364 +  
sR3 991503 991449 -  
sR24 1026075 1026129 +  
sR53 1042253 1042312 +  
sR38 1065727 1065785 +  
sR10 1069747 1069694 -  
sR18 1094945 1095002 +  
sR37 1195781 1195837 +  
sR1 1209329 1209275 -  
sR17 1241140 1241088 -  
sR59 1260132 1260193 +  
sR50 1280527 1280581 +  
sR41 1292414 1292362 -  
sR40 1330583 1330539 - within tRNA Trp intron
sR11 1397127 1397182 +  
sR8 1403663 1403718 +  
sR36 1409134 1409188 +  
sR48 1468709 1468655 -  
sR6 1536389 1536443 +  
sR47 1653183 1653240 +  
sR23 1656858 1656803 -  
sR5 1660715 1660769 +  
sR34 1755929 1755876 - 1 nt from sR12
sR12 1755930 1755984 +  

Locus coordinates include 5' flanking sequence (4 nt upstream of C box) and 3' flanking sequence (2 nt downstream of D box). These are only general estimates of bounds based on sRNA molecules characterized from other species.