Pyrococcus sRNA Name Mapping

Three sRNAs were identified by Gaspin et al. (sR38, sR34, sR39) that were not described in Omer et al.. These sRNAs were given the next three unused consecutive names (sR58-sR60) above the Omer et al. sRNA names to allow one consistent naming system (referred to as Lowe/Eddy on this website). Thirteen sRNAs were identified in Omer et al. (sR22, sR25, sR27, sR30, sR31, sR32, sR40, sR41, sR46, sR49, sR53, sR56, sR57) that were not described in Gaspin et al..

Note: Genome locus coordinates within Gaspin et al. (Table 1) are incorrect for 24 of the 46 sRNA genes (all sRNAs on the negative strand) according to the current version of the P. abyssi genome. Consequently, determination of overlapping gene identifications between the Gaspin et al. set and the Omer et al. P. abyssi sRNAs is only possible by direct sequence comparison, or use of the tables below.

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Sorted by Gaspin et al. sRNA number Gaspin sRNA Number Lowe/Eddy sRNA Number sR01 sR24 sR02 sR18 sR03 sR21 sR04 sR50 sR05 sR11 sR06 sR06 sR07 sR47 sR08 sR05 sR09 sR12 sR10 sR02 sR11 sR28 sR12 sR26 sR13 sR44 sR14 sR15 sR15 sR16 sR16 sR23 sR17 sR07 sR18 sR19 sR19 sR09 sR20 sR51 sR21 sR14 sR22 sR17 sR23 sR01 sR24 sR10 sR25 sR03 sR26 sR54 sR27 sR35 sR28 sR37 sR29 sR08 sR30 sR42 sR31 sR20 sR32 sR04 sR33 sR13 sR34 sR59 sR35 sR29 sR36 sR55 sR37 sR52 sR38 sR58 sR39 sR60 sR40 sR39 sR41 sR48 sR42 sR36 sR43 sR43 sR44 sR45 sR45 sR34 sR46 sR38

Sorted by Lowe/Eddy sRNA number Lowe/Eddy sRNA Number Gaspin sRNA Number sR01 sR23 sR02 sR10 sR03 sR25 sR04 sR32 sR05 sR08 sR06 sR06 sR07 sR17 sR08 sR29 sR09 sR19 sR10 sR24 sR11 sR05 sR12 sR09 sR13 sR33 sR14 sR21 sR15 sR14 sR16 sR15 sR17 sR22 sR18 sR02 sR19 sR18 sR20 sR31 sR21 sR03 sR22 None sR23 sR16 sR24 sR01 sR25 None sR26 sR12 sR27 None sR28 sR11 sR29 sR35 sR30 None sR31 None sR32 None sR34 sR45 sR35 sR27 sR36 sR42 sR37 sR28 sR38 sR46 sR39 sR40 sR40 None sR41 None sR42 sR30 sR43 sR43 sR44 sR13 sR45 sR44 sR46 None sR47 sR07 sR48 sR41 sR49 None sR50 sR04 sR51 sR20 sR52 sR37 sR53 None sR54 sR26 sR55 sR36 sR56 None sR57 None sR58 sR38 sR59 sR34 sR60 sR39

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