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sR1 | GGCGGGGCCG | ATGATGA | GTTCTAGCCTTA | CGGA | CACG | TGAAGA | CAGTGGCCAGGC | CTGA | GGATTCTCCC |
sR2 | GGCTAGTGGG | ATGATGA | CGCCGTCCCAGC | ATGA | AGGG | TGATGA | CCTCACGACGAT | CTGA | CCAGCACCGG |
sR3 | CTAGCCAGCG | ATGAGGA | CGGTGGAGCGACG | CTGA | CCAAGGTAGGGGA | TGAGGA | GCGACACTCCC | CTGA | GCACGGCCCC |
sR4 | TGGATGGGCG | ATGAGGA | TAGGCGGGCTTTT | CTGA | GACGTG | TGATGA | GTGCGGTCGTAT | CCGA | GTCCGGCCGG |
sR5 | TCGGAGGCTA | GTGATGA | TCCATGCAGGCC | CTGA | GGTCCTGCCCGCGC | CGATGA | AGAGCCTATGGGACTACCCT | CTGA | AGCCTAGGGC |
sR6 | GGTGGCGGCT | GTGATGA | CGGCTGGTATTG | CCGA | AGGCAGGGGCCGT | TGAGGA | GGGACACCAGTCT | TTGA | GCCGCCTTCG |
sR7 | TATAGGAAGT | GTGATGA | TTTACTCCCGGA | CCGA | GCAATGCTG | TGAGGA | CTACTTACCCGG | CTGA | CAGTGCTTTG |
sR8 | GAATCGCGGA | GTGATGA | GTAAGGCTGGGATTG | CTGA | AAGCTGTTTTG | AGATGG | AGCGTGATGAGCAGGG | CTGA | GCGCTGAACG |
sR9 | AGGAGAGGGG | ATGGTGA | GGGGTGCGAGCG | CAGA | GCCCCAGGGGCGG | TGAAGA | AGGATTATAACAGCGT | CTGA | CCCTCTGTAC |
sR10 | ATAAGGGGGC | GTGATGA | GGGCTTAACGG | CTCA | CGTTTTCT | GGGAGA | GTGTCGCACCT | TTGA | GGGCGATCAC |
sR11 | GGACATGCCG | ATGATGT | CTACTCCCGACT | ACGA | CACGCCGTGG | GGATGA | GTTGAAGGCATTTGG | CTGA | GGCAGCCTGG |
sR12 | GTATTCCCCT | ATGAAGA | GGAGTACATGCGGTGG | TGGA | AGCTCCCTTGAAGCGTGTAGGAGACCT | TGAGGA | CCTCGCCGGG | CTGA | GGGTTTTAGT |
sR13 | GAAGCTATGT | ATGATGA | CACGGGGCTTCCTCGACGCCTCCCG | CAGA | CGGGTGGTGTA | TGAAGA | AAGGTAGAGACG | CTGA | CTCAGAAATA |
sR14 | CTATATGGGC | GGGATGA | GGTGTGACTCCAATT | CTGA | GCCTCAAGGGCCG | TGGGGA | GATCCACCCCTAT | CTGA | CCGCTTCCCA |
sR15 | GAGCAGCGGG | ATGAAGA | CTACTCCCCAGA | CCGA | GGCAAGTCTCG | AGATGA | CGACAATTCCTTTAG | CAGA | CCGCGTCACC |
sR16 | GGTGCCCGGT | GTGATGA | ACACCTCGATCT | CCGA | TCGCTGGGA | TGAGGA | TGCGGTGGCTGT | CTGA | CTCTCTAGGG |
sR17 | TGCTGTGGGG | ATGAAGA | GTTCTTTGA | CCGA | CGCTAGTGGTA | TGAGGA | GGCTGAGCTACG | CTGA | CCCCCGGCCG |
sR18 | AATGTGGCCG | ATGAAGA | GTGGTATTACCG | CCTA | GTAGCGGCGATAG | CGATGA | CGAGGCCCCAGTG | CTGA | GGCCCAGGGG |
sR19 | AAGGGTTTGA | ATGCTGA | ACTATCAATACAC | TAGA | TAACGTGGGGA | TGACGA | GGCGGGCAGCCT | TTGA | GGACGAAGTG |
sR20 | TTTTGGCGGG | ATGAAGA | CTAGCTAACCGTGG | CTCA | CAGCTATG | GGATGG | CCTAGGGCTCTCGC | CGGA | CCGCCAGCCT |
sR21 | CCCCCCGGGA | GTGATGA | GGGTTAAAAGCG | CCGA | CTCTGGGTAGCA | TGGGGA | AGGCCAGGACAG | CTGA | CCATACCCCT |
sR22 | GGGTTTGGGG | ATGAGGA | CTCCACGGGTT | CCGA | CGCCCCCTCGGGGG | TGGGGA | CACCTGTCTCAA | CTGA | CCCTAGCATT |
sR23 | CCCTGGGCGG | ATGAAGA | CACTTGCCCCCAC | CTGA | GCCTGTG | TGAAGA | GATTACCGCGGACTC | CAGA | CGCCCTCGAC |
None of the Ape predictions have been verified as RNA
transcripts by primer extension. Exceptions to consensus box features
shown in red. Predicted methylation
guide regions with Watson-Crick/G-U base pairings to target RNAs shown
in green. Predicted terminal stem
pairings shown in blue. 5' and 3' ends
of sRNAs were not determined experimentally (an invariant 10
nucleotides of sequence flanking the C box and D boxes is displayed).