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| sR1 | TGAACAGCCG | ATGATGA | CTGATGGGCGAC | CTGA | GAAA | TGATGA | AAGGGAGAGT | CTGA | GGCTAATCCA |
| sR2 | CCAAAAATAG | GTGATGA | ATCTAGCAGGAT | CTGA | GCCGTGGCGA | TGATGA | CGGCTGTACTCT | CTGA | TTACAGCAAG |
| sR3 | CTCCAGCGGC | GTGATGA | TTGACGGGTCTG | CTGA | GCGG | TGATGA | CCCGTTGGAGCT | CTGA | CCCGAAGAGA |
| sR4 | TGAGTGAGCG | ATGATGA | AAGGGCCCCT | CTGA | ACGG | TGATGA | GGGTTTTGAGTT | CTGA | GCTCAGAGCT |
None of the Afu predictions have been verified as RNA transcripts
by primer extension. Exceptions to consensus box features shown in red.
Predicted methylation guide regions with Watson-Crick/G-U base pairings
to target RNAs shown in green. Predicted
terminal stem pairings shown in blue. 5' and
3' ends of sRNAs were not determined experimentally (an invariant 10 nucleotides
of sequence flanking the C box and D boxes is displayed).