tRNAscan-SE v.1.23 (April 2002) scan results (on host lowedev.cse.ucsc.edu)
Started: Thu Jul 17 21:59:48 PDT 2008

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Search Mode:                 Eukaryotic
Searching with:              tRNAscan + EufindtRNA -> Cove
Covariance model:            TRNA2-euk.cm
tRNAscan parameters:         Strict
EufindtRNA parameters:       Relaxed (Int Cutoff= -32.1)

Reporting HMM/2' structure score breakdown
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First-pass (tRNAscan/EufindtRNA) Stats:
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Sequences read:         6
Seqs w/at least 1 hit:  6
Bases read:             20502981 (x2 for both strands)
Bases in tRNAs:         62542
tRNAs predicted:        675
Av. tRNA length:        92
Script CPU time:        3.30 s
Scan CPU time:          15.06 s
Scan speed:             2722.8 Kbp/sec

First pass search(es) ended: Thu Jul 17 22:00:08 PDT 2008

Cove Stats:
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Candidate tRNAs read:     675
Cove-confirmed tRNAs:     510
Bases scanned by covels:  71992
% seq scanned by covels:  0.2 %
Script CPU time:          2.00 s
Cove CPU time:            87.48 s
Scan speed:               823.0 bp/sec

Cove analysis of tRNAs ended: Thu Jul 17 22:02:31 PDT 2008

Summary
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Overall scan speed: 380248.2 bp/sec

tRNAs decoding Standard 20 AA:              510
Selenocysteine tRNAs (TCA):                 0
Possible suppressor tRNAs (CTA,TTA):        0
tRNAs with undetermined/unknown isotypes:   0
Predicted pseudogenes:                      0
                                            -------
Total tRNAs:                                510

tRNAs with introns:     	316

| Gly-TCC: 11 | Pro-AGG: 21 | Pro-CGG: 2 | Thr-CGT: 1 | Thr-TGT: 3 | Val-CAC: 3 | Ser-CGA: 4 | Ser-TGA: 2 | Ser-GCT: 6 | Arg-TCG: 25 | Leu-AAG: 21 | Leu-CAG: 11 | Leu-TAG: 2 | Leu-CAA: 3 | Phe-GAA: 17 | Asn-GTT: 16 | Lys-CTT: 34 | Lys-TTT: 4 | Asp-GTC: 28 | Glu-CTC: 27 | His-GTG: 4 | Gln-CTG: 14 | Gln-TTG: 3 | Ile-AAT: 26 | Ile-TAT: 1 | Tyr-GTA: 14 | Trp-CCA: 13 |

Isotype / Anticodon Counts:

Ala   : 36	  AGC: 30      GGC:         CGC: 2       TGC: 4     
Gly   : 41	  ACC:         GCC: 30      CCC:         TCC: 11    
Pro   : 26	  AGG: 21      GGG:         CGG: 2       TGG: 3     
Thr   : 27	  AGT: 22      GGT:         CGT: 2       TGT: 3     
Val   : 34	  AAC: 24      GAC:         CAC: 8       TAC: 2     
Ser   : 33	  AGA: 21      GGA:         CGA: 4       TGA: 2       ACT:         GCT: 6     
Arg   : 31	  ACG: 1       GCG:         CCG:         TCG: 25      CCT: 1       TCT: 4     
Leu   : 40	  AAG: 21      GAG:         CAG: 13      TAG: 2       CAA: 3       TAA: 1     
Phe   : 17	  AAA:         GAA: 17                              
Asn   : 16	  ATT:         GTT: 16                              
Lys   : 38	                            CTT: 34      TTT: 4     
Asp   : 28	  ATC:         GTC: 28                              
Glu   : 33	                            CTC: 27      TTC: 6     
His   : 12	  ATG:         GTG: 12                              
Gln   : 18	                            CTG: 15      TTG: 3     
Ile   : 27	  AAT: 26      GAT:                      TAT: 1     
Met   : 18	                            CAT: 18                 
Tyr   : 14	  ATA:         GTA: 14                              
Supres: 0	                            CTA:         TTA:       
Cys   : 8	  ACA:         GCA: 8                               
Trp   : 13	                            CCA: 13                 
SelCys: 0	                                         TCA: