>> tRNAscan-SE >> Lowe Lab
[Home] [Find tRNAs] [BLAST] [Download] [Bug/Request] [FAQ] [Citation] [Legend] [Other Links]

tRNAscan-SE Analysis of Yarrowia lipolytica CLIB99

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrA 1 54949 55034 Pro AGG atgtaatctt attattttta 54985 54998 70.87 51.18 19.69 Both chrA 2 161984 162079 Leu CAG attcacgtgc gctagtctcg 162022 162035 62.23 32.76 29.47 Both chrA 3 166763 166861 Leu AAG gaaaaacaca ttgctactga 166801 166817 59.07 29.60 29.47 Both chrA 4 218968 219059 Asn GTT taacgcttca tctgaatttt 219006 219023 67.19 39.81 27.38 Both chrA 5 357152 357224 Pro TGG taagattttc cttttttaga 0 0 59.30 38.26 21.04 Both chrA 6 376198 376290 Asn GTT aaacatctga tcttttttgc 376236 376254 69.38 42.48 26.90 Both chrA 7 377817 377916 Leu AAG gaaaaacacc cgtcttccaa 377855 377872 57.14 27.67 29.47 Both chrA 8 386667 386765 Lys CTT ctttttcacc tttctttttg 386704 386729 64.61 41.91 22.70 Both chrA 9 446953 447039 Gln CTG cccatcacca ttcttttcag 446990 447004 56.42 36.15 20.27 Both chrA 10 457696 457787 Phe GAA ctcatagcaa attctttttt 457733 457751 67.45 40.19 27.26 Both chrA 11 477647 477720 Met CAT catcgagtac ttcgactttt 0 0 75.21 55.84 19.37 Both chrA 12 483047 483120 Met CAT acaaaacgtc cttgtttctt 0 0 75.21 55.84 19.37 Both chrA 13 484054 484124 Gly GCC gccaagaaac ggttggttac 0 0 64.77 39.40 25.37 Both chrA 14 504695 504768 Ala AGC cataatttga ttttttaaat 0 0 66.06 48.57 17.49 Eufind chrA 15 531689 531771 Lys CTT gtaacaattc ttcttttttc 531726 531735 63.65 40.95 22.70 Both chrA 16 563581 563672 Ile AAT aatatctcca ttcctttttg 563619 563636 66.16 36.47 29.69 Both chrA 17 576798 576869 Thr AGT cgtcatagcc gtaaattttt 0 0 74.31 47.43 26.88 Both chrA 18 581476 581568 Ile AAT ctcagaatcc ttctttttgt 581514 581532 65.50 35.82 29.68 Both chrA 19 584902 584992 Asn GTT aaacatctga tctttttcct 584940 584956 69.91 43.01 26.90 Both chrA 20 587587 587660 Met CAT gcaacggcaa tccgtctctt 0 0 75.21 55.84 19.37 Both chrA 21 606407 606502 Leu CAG ttcacgaatt ttttttaaac 606445 606458 59.92 36.83 23.09 Both chrA 22 608438 608509 Thr AGT gcttcatagt tctatctcct 0 0 74.31 47.43 26.88 Both chrA 23 615517 615606 Phe GAA attttcagcc gtttggtaga 615554 615570 69.61 42.35 27.26 Both chrA 24 616339 616427 Arg TCG catcacaaca gccctctttt 616375 616391 49.63 33.93 15.70 Both chrA 25 632134 632216 Lys CTT cagaaaaatc tttttgccat 632171 632180 63.51 40.81 22.70 Both chrA 26 684071 684142 Met CAT cccatcacgg tgtttttttt 0 0 72.62 45.90 26.72 Both chrA 27 701288 701387 Leu AAG caaaacacaa gaagcggatg 701326 701343 57.28 27.81 29.47 Both chrA 28 712976 713047 Thr AGT attcatagca ctttcttttt 0 0 74.31 47.43 26.88 Both chrA 29 723246 723328 Lys CTT tcgtcaatct ttctttttgg 723283 723292 63.50 40.81 22.69 Both chrA 30 761445 761533 Tyr GTA aactcatcac tggtactgat 761484 761497 64.01 35.00 29.01 Both chrA 31 761830 761911 Lys CTT ataccaattc gaagtaacta 761867 761875 64.79 42.10 22.69 Both chrA 32 866417 866512 Ser GCT ttttgtagtg atatttttga 866454 866467 69.11 51.11 18.00 Both chrA 33 903006 903094 Arg TCG acatttacca ctttttgccc 903042 903058 49.49 33.80 15.69 Both chrA 34 909367 909459 Ile AAT tgaacattcc ttgtttttat 909405 909423 66.14 36.46 29.68 Both chrA 35 1054510 1054582 Pro TGG gtcacgtgtc gtttttttgg 0 0 59.30 38.26 21.04 Both chrA 36 1131383 1131475 Ile AAT caaaattcgc cttttttgac 1131421 1131439 66.14 36.46 29.68 Both chrA 37 1157529 1157618 Phe GAA catacttcgc attgcaactt 1157566 1157582 68.97 41.71 27.26 Both chrA 38 1175404 1175490 Asp GTC caagaaaaaa tatctttttg 1175441 1175455 58.20 33.46 24.74 Both chrA 39 1179164 1179253 Phe GAA gatatatatt attctttttg 1179201 1179217 69.61 42.35 27.26 Both chrA 40 1294093 1294173 Gly TCC taataagttc aattttttga 1294129 1294138 56.90 34.11 22.79 Both chrA 41 1301910 1301995 Pro AGG aacatcgcac ttttttgctc 1301946 1301959 70.87 51.18 19.69 Both chrA 42 1309693 1309773 Gly TCC aaaaaaacgc ctctttttgc 1309729 1309738 57.04 34.25 22.79 Both chrA 43 1315937 1316018 Lys CTT cccgtcgcgc ccctttttta 1315974 1315982 64.79 42.10 22.69 Both chrA 44 1318253 1318323 Gly GCC atcaaactca gtttggttac 0 0 64.77 39.40 25.37 Both chrA 45 1322116 1322203 Tyr GTA gaaaattctc tttttttttg 1322155 1322167 64.51 35.51 29.00 Both chrA 46 1334940 1335010 Gly GCC atacaaagaa actcggttac 0 0 64.77 39.40 25.37 Both chrA 47 1379010 1379100 Ile AAT caaaacacac tgtcacgagt 1379048 1379064 65.39 35.70 29.69 Both chrA 48 1384822 1384914 Ile AAT tgtcaaaagc ttctttttgg 1384860 1384878 66.14 36.46 29.68 Both chrA 49 1404668 1404753 Trp CCA agatatcgct agttctaata 1404704 1404717 61.66 44.96 16.70 Both chrA 50 1419131 1419218 Asp GTC acgtcatcct tttctttttg 1419168 1419183 56.91 32.17 24.74 Both chrA 51 1422259 1422349 Phe GAA aaattccaca gtctttttgc 1422296 1422313 62.38 35.11 27.27 Both chrA 52 1424784 1424857 Val AAC cataactcct ctttttgtca 0 0 63.53 37.80 25.73 Both chrA 53 1428173 1428257 Gln CTG tcacatccgc tcttttttat 1428210 1428222 56.27 36.00 20.27 Both chrA 54 1434549 1434639 Phe GAA tggtctcaca atgctacagc 1434586 1434603 65.49 38.22 27.27 Both chrA 55 1447841 1447927 Pro AGG actcatccat actctttttg 1447877 1447891 71.00 51.30 19.70 Both chrA 56 1453077 1453148 Met CAT aatctatatg ttcttttttg 0 0 72.62 45.90 26.72 Both chrA 57 1567585 1567666 Ser AGA tttcgttgta ccattttttg 0 0 76.60 46.88 29.72 Both chrA 58 1576119 1576207 Tyr GTA cacaatccat agcacacgag 1576158 1576171 63.37 34.36 29.01 Both chrA 59 1622542 1622613 Cys GCA ccatattcca cttttttgct 0 0 73.71 56.78 16.93 Both chrA 60 1633502 1633575 Val AAC catcacaggc ctttttgctg 0 0 63.53 37.80 25.73 Both chrA 61 1643637 1643719 Lys CTT atcaaatatc ttactttttc 1643674 1643683 63.50 40.81 22.69 Both chrA 62 1708855 1708936 Lys CTT caaaaacacc aattttttga 1708892 1708900 65.43 42.73 22.70 Both chrA 63 1747233 1747321 Arg TCG aaaaattcca tttttgtcct 1747269 1747285 49.49 33.80 15.69 Both chrA 64 1749922 1749995 Val AAC ttcagaaatc ctttttgcat 0 0 63.53 37.80 25.73 Both chrA 65 1758698 1758778 Gly TCC ccatcgagtc atctttttgc 1758734 1758743 57.08 34.77 22.31 Both chrA 66 1797303 1797374 Glu TTC atcgcataaa gttctttttt 0 0 72.64 46.17 26.47 Both chrA 67 1824260 1824341 Lys CTT tccacaaccg ttctttttgg 1824297 1824305 64.79 42.10 22.69 Both chrA 68 2031974 2032063 Thr TGT agcaccgtgg gttctttttg 2032010 2032027 73.79 51.96 21.83 Both chrA 69 2177545 2177635 Ile AAT caaaagaaac agtttttttc 2177583 2177599 66.03 36.34 29.69 Both chrA 70 1883371 1883291 Glu CTC aattcaaaaa gtttggtcca 1883334 1883326 60.91 33.49 27.42 Both chrA 71 1824963 1824890 Ala AGC actcatcttt tttttgtctc 0 0 66.06 48.57 17.49 Eufind chrA 72 1822793 1822722 Cys GCA tcatatatac cttttttctt 0 0 73.71 56.78 16.93 Both chrA 73 1819384 1819292 Ile AAT aaaaattcgc atttttttat 1819346 1819328 66.14 36.46 29.68 Both chrA 74 1750234 1750135 Leu AAG ttcaaaaacc tttttgccaa 1750196 1750179 59.06 29.59 29.47 Both chrA 75 1709477 1709404 Met CAT ctatcggaac ttctttcttt 0 0 75.21 55.84 19.37 Both chrA 76 1673541 1673454 Asp GTC acccaccgct tatctttttg 1673504 1673489 57.55 32.80 24.75 Both chrA 77 1625782 1625709 Met CAT tggcagattc tttctttttt 0 0 75.21 55.84 19.37 Both chrA 78 1621733 1621642 Ile AAT aaaccatccc ttctttttgc 1621695 1621678 66.30 36.61 29.69 Both chrA 79 1611931 1611860 Thr AGT taaaaaagcc cttatttttt 0 0 74.31 47.43 26.88 Both chrA 80 1606136 1606055 Ser AGA ttcagttgta ccatattttt 0 0 76.60 46.88 29.72 Both chrA 81 1594262 1594163 Leu AAG ttcacaaaat tctttttgtt 1594224 1594207 58.90 29.04 29.86 Both chrA 82 1577034 1576963 Ala TGC tttgtagttt ctctattttt 0 0 60.58 53.98 6.60 Eufind chrA 83 1568219 1568134 Trp CCA ttcaagtgtt aattctcaag 1568183 1568170 61.66 44.96 16.70 Both chrA 84 1494551 1494478 Val AAC aagattcgtt ctttttgcag 0 0 63.53 37.80 25.73 Both chrA 85 1457539 1457452 Asp GTC ttcccaccga catctttttt 1457502 1457487 57.70 32.95 24.75 Both chrA 86 1435957 1435862 Ser GCT gttcgaccgc atttttttgg 1435920 1435907 72.55 54.55 18.00 Both chrA 87 1433668 1433597 Met CAT tatctctaca ttctttttac 0 0 71.37 43.87 27.50 Both chrA 88 1424537 1424452 Trp CCA acatatcact tgttctacga 1424501 1424488 61.66 44.96 16.70 Both chrA 89 1420120 1420034 Pro AGG ttattcacgt atttcttttt 1420084 1420070 71.00 51.30 19.70 Both chrA 90 1419698 1419616 Lys CTT tctcaacaaa ttctttttca 1419661 1419652 63.50 40.81 22.69 Both chrA 91 1385608 1385521 Asp GTC tttttcacaa tgttggttac 1385571 1385556 57.55 32.80 24.75 Both chrA 92 1352451 1352363 Arg TCG acaacaagtt acagctgctt 1352415 1352399 49.63 33.93 15.70 Both chrA 93 1348226 1348153 Ala AGC aaaacacaag tccacgtgtt 0 0 66.06 48.57 17.49 Eufind chrA 94 1329856 1329785 Gln CTG tgaaaaaatt gtgatctctg 0 0 67.86 44.11 23.75 Both chrA 95 1319325 1319254 Cys GCA ctcaaaatcc ttttttcttc 0 0 73.71 56.78 16.93 Both chrA 96 1297383 1297303 Glu CTC atataaaaaa gtttggttac 1297346 1297338 60.91 33.49 27.42 Both chrA 97 1287438 1287343 Leu CAG ttcaacaatt ttattttttg 1287400 1287387 59.92 36.83 23.09 Both chrA 98 1251859 1251779 Glu CTC accttacaag tgatttcttt 1251822 1251814 60.91 33.49 27.42 Both chrA 99 1228440 1228357 Gln CTG agtcctcaac ttttgtatcg 1228403 1228392 59.49 36.11 23.38 Both chrA 100 1187832 1187759 Ala AGC ccacagctca atcacgtgac 0 0 66.06 48.57 17.49 Eufind chrA 101 1181559 1181468 Phe GAA caacaatcac attacttttt 1181522 1181504 68.09 40.83 27.26 Both chrA 102 901243 901172 Thr AGT tgcaatcgcc gagtcgaatt 0 0 74.31 47.43 26.88 Both chrA 103 880004 879934 Gly GCC ctatctccaa ggttggttac 0 0 64.77 39.40 25.37 Both chrA 104 861901 861816 Trp CCA ccgacgcact agttctctga 861865 861852 60.75 44.04 16.71 Both chrA 105 858694 858609 Pro AGG tttcatccag tatcagctgc 858658 858645 70.87 51.18 19.69 Both chrA 106 852779 852706 Ala AGC ctccaatcgt taagagctct 0 0 66.06 48.57 17.49 Eufind chrA 107 847879 847779 Leu AAG aaacagttag tttttttctg 847841 847823 58.68 29.21 29.47 Both chrA 108 824055 823970 Asp GTC aaaaaagcca ttttttggca 824018 824005 50.46 30.79 19.67 Both chrA 109 723870 723782 Arg TCG aacaatttct tttttccccc 723834 723818 50.13 34.44 15.69 Both chrA 110 715168 715083 Pro AGG ccaggaaaat gtcctttttt 715132 715119 70.87 51.18 19.69 Both chrA 111 713286 713205 Lys CTT tccaagattc atctttttgt 713249 713241 64.65 41.95 22.70 Both chrA 112 712283 712213 Gly GCC tacctccaaa acttggttac 0 0 64.77 39.40 25.37 Both chrA 113 701819 701731 Arg TCG ccaacaagtt atagctgcat 701783 701767 50.27 34.57 15.70 Both chrA 114 621204 621121 Gln CTG caaaaacagc ttcctttttg 621167 621156 57.55 37.28 20.27 Both chrA 115 615070 615000 Gly GCC tacctccaaa gtttggttac 0 0 64.77 39.40 25.37 Both chrA 116 585401 585328 Val AAC tccacaaccg ctttttgcat 0 0 63.53 37.80 25.73 Both chrA 117 582471 582391 Glu CTC aaacaaccta tgagaagcag 582434 582426 60.91 33.49 27.42 Both chrA 118 577030 576948 Lys CTT tttgaaaatc tttttaaatt 576993 576984 64.14 41.44 22.70 Both chrA 119 563150 563061 Phe GAA cgaaatcgcg attatttttt 563113 563097 69.61 42.35 27.26 Both chrA 120 532052 531981 Thr AGT cgtataacca attctttttt 0 0 74.31 47.43 26.88 Both chrA 121 508883 508792 Asn GTT attaagttca tctgaatttt 508845 508828 67.19 39.81 27.38 Both chrA 122 474251 474180 Glu TTC atggatatct acggctcctt 0 0 70.55 44.09 26.46 Both chrA 123 473295 473204 Ser CGA gtggccgagt atttttttgg 473258 473249 76.74 44.37 32.37 Both chrA 124 456972 456902 Gly GCC tacctctaat ggttggttac 0 0 64.77 39.40 25.37 Both chrA 125 452923 452828 His GTG aatctcaccg aagccgtatc 452886 452863 58.33 33.04 25.29 Both chrA 126 449053 448973 Glu CTC gctcccacca tagacacgtg 449016 449008 60.14 32.72 27.42 Both chrA 127 406725 406639 Tyr GTA aaaaactcac ttctctcttt 406686 406675 63.61 34.60 29.01 Both chrA 128 376708 376625 Thr TGT gaaaatcagg gttgtttttt 376672 376661 73.73 51.91 21.82 Both chrA 129 366422 366341 Ser AGA cgataaaatt ccattttttg 0 0 76.60 46.88 29.72 Both chrA 130 340343 340263 Gly TCC cccaccattc ttcttttttg 340307 340298 57.36 35.05 22.31 Both chrA 131 337180 337089 Ile AAT aacatcttca aatctttttg 337142 337125 66.94 37.25 29.69 Both chrA 132 245126 245046 Gly TCC gaaaatttcg tttttatcat 245090 245081 57.56 35.25 22.31 Both chrA 133 227163 227090 Val AAC caacagagtt ttttttccct 0 0 58.07 37.51 20.56 Both chrA 134 163182 163083 Leu AAG aatcactatt tttttttgca 163144 163127 58.90 29.04 29.86 Both chrA 135 89223 89142 Lys CTT aaatacatct aatctttttt 89186 89178 64.15 41.46 22.69 Both chrA 136 23876 23788 Arg TCG caacttttct ctttttgccc 23840 23824 49.49 33.80 15.69 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrB 1 11784 11857 Ala AGC taagaaaatt ttccttttgt 0 0 66.06 48.57 17.49 Eufind chrB 2 25708 25788 Glu CTC aaaagaaaaa gcgtggttac 25745 25753 58.38 33.25 25.13 Both chrB 3 44278 44377 Leu AAG tcaaaaacac ttttttgcac 44316 44333 58.90 29.04 29.86 Both chrB 4 244695 244784 Arg TCG ctccacacca ctttttgccc 244731 244748 49.12 33.42 15.70 Both chrB 5 383135 383220 Thr CGT cttacagcca aaaatttttt 383172 383184 59.38 29.96 29.42 Both chrB 6 501680 501772 Lys TTT gaactgtcgg catttccttt 501717 501736 74.78 52.01 22.77 Both chrB 7 508688 508774 Pro AGG ctcatccagt tatccttttt 508724 508738 70.50 50.81 19.69 Both chrB 8 636203 636273 Gly GCC cgtttaataa gctccggtta 0 0 64.77 39.40 25.37 Both chrB 9 643269 643340 Cys GCA acatatttct cttttttatg 0 0 73.71 56.78 16.93 Both chrB 10 665559 665632 Val AAC ccccacagct cttttttagc 0 0 63.53 37.80 25.73 Both chrB 11 685616 685689 Val AAC aagaaaacct ctttttgcag 0 0 63.53 37.80 25.73 Both chrB 12 807404 807475 Thr AGT gataaatctt cttctttttt 0 0 74.31 47.43 26.88 Both chrB 13 810753 810834 Lys CTT cccaacatcc acgttttttt 810790 810798 64.79 42.10 22.69 Both chrB 14 989904 989997 His GTG gacgtctaca gaaccccgag 989941 989962 58.86 32.78 26.08 Both chrB 15 1189297 1189377 Glu CTC cttcatccaa tgtatagtgt 1189334 1189342 61.05 33.63 27.42 Both chrB 16 1244816 1244887 Thr AGT caaaaaacct aatttttttt 0 0 74.31 47.43 26.88 Both chrB 17 1337498 1337583 Asp GTC tactccatct tactttttta 1337535 1337548 57.16 32.41 24.75 Both chrB 18 1479582 1479655 Val AAC tcaaattcct ctttttgtac 0 0 63.53 37.80 25.73 Both chrB 19 1745449 1745519 Gly GCC tataaaaaac gtttggttac 0 0 64.77 39.40 25.37 Both chrB 20 1784915 1785006 Asn GTT acaaccgcca tctggttttt 1784953 1784970 67.19 39.81 27.38 Both chrB 21 2112388 2112461 Val AAC atttcactgg ctttttggtc 0 0 63.53 37.80 25.73 Both chrB 22 2252688 2252776 Arg TCG tagttcaaaa cttttttact 2252724 2252740 49.63 33.93 15.70 Both chrB 23 2348596 2348687 Asn GTT gacatgtcca tctggttttt 2348634 2348651 67.19 39.81 27.38 Both chrB 24 2550542 2550625 Gln TTG cggaaaattc tttgtttggg 2550579 2550590 61.55 38.05 23.50 Both chrB 25 2579498 2579583 Pro AGG cagaaaagct agtttctttt 2579534 2579547 70.87 51.18 19.69 Both chrB 26 2652246 2652332 Trp CCA aacgcgtgtt tgttaatgac 2652282 2652296 61.93 45.23 16.70 Both chrB 27 2849805 2849877 Pro TGG ttttataacc ttttttggaa 0 0 59.30 38.26 21.04 Both chrB 28 2862549 2862622 Val AAC ttcaaaaatc cttttttact 0 0 63.53 37.80 25.73 Both chrB 29 2938459 2938531 Val CAC ttttaagttc cttttttctt 0 0 66.64 40.90 25.74 Both chrB 30 2882357 2882284 Met CAT aaaaaattgc cgtttctttt 0 0 75.21 55.84 19.37 Both chrB 31 2880620 2880547 Met CAT acacaaaatt tgtttctttt 0 0 75.21 55.84 19.37 Both chrB 32 2859544 2859464 Glu CTC tacgtatatt ttatggttac 2859507 2859499 60.91 33.49 27.42 Both chrB 33 2623252 2623160 Ile AAT ataattcgac tttatttttg 2623214 2623196 64.73 35.04 29.69 Both chrB 34 2569380 2569288 Ile AAT tataaaaata tttatttttg 2569342 2569324 66.14 36.46 29.68 Both chrB 35 2530497 2530416 Ser AGA ttaaatttct ccatttttct 0 0 76.60 46.88 29.72 Both chrB 36 2475748 2475678 Gly GCC catgaaaatc gtttggttac 0 0 64.77 39.40 25.37 Both chrB 37 2361609 2361538 Thr AGT gaaacaagcc tttttttcct 0 0 74.31 47.43 26.88 Both chrB 38 2299473 2299386 Asp GTC caaactaaaa gtttggttac 2299436 2299421 56.78 32.03 24.75 Both chrB 39 2154472 2154401 His GTG ataaaagtcc atgccaatat 0 0 66.09 40.02 26.07 Both chrB 40 1826075 1825984 Phe GAA aaacatgtct atttttttac 1826038 1826020 67.45 40.19 27.26 Both chrB 41 1692293 1692189 Leu TAG gccagtattc tttttgctgg 1692255 1692233 54.36 31.41 22.95 Both chrB 42 1608494 1608407 Asp GTC gatgtaccat aatctttttg 1608457 1608442 58.33 33.59 24.74 Both chrB 43 1502743 1502671 Arg TCT ttagccttcc cttgtataaa 0 0 73.78 61.23 12.55 Both chrB 44 1455005 1454925 Gly TCC agcgtgagca aaatttttcg 1454969 1454960 57.04 34.25 22.79 Both chrB 45 1353359 1353274 Pro AGG aaatatcggt tacttttttg 1353323 1353310 70.87 51.18 19.69 Both chrB 46 1285624 1285553 Glu TTC gcggttaaca gatttatttt 0 0 72.64 46.17 26.47 Both chrB 47 1254668 1254582 Asp GTC aaaaaactca tatctttttt 1254631 1254617 58.20 33.46 24.74 Both chrB 48 1186628 1186533 Ser GCT aggcacacct gtttattttt 1186591 1186578 70.92 52.55 18.37 Both chrB 49 956800 956713 Gln CTG cccaactttc atctttttgt 956763 956748 56.34 36.07 20.27 Both chrB 50 946600 946529 Thr AGT ccagcgaatt ctccttcggt 0 0 74.31 47.43 26.88 Both chrB 51 890750 890662 Arg TCG accatcgcac tttttaacat 890714 890698 49.49 33.80 15.69 Both chrB 52 826003 825910 Arg TCG accaccacaa gttacttttt 825967 825946 49.92 34.22 15.70 Both chrB 53 525160 525069 Ile AAT acaaaaattc tctctttttg 525122 525105 66.30 36.61 29.69 Both chrB 54 522952 522869 Lys CTT ggagcaacaa tacataaagg 522915 522905 63.77 41.08 22.69 Both chrB 55 516521 516450 Met CAT gttacaaggc tttgttcttt 0 0 75.07 48.35 26.72 Both chrB 56 487454 487372 Lys CTT tcaacaaaat ctcttttttg 487417 487408 63.50 40.81 22.69 Both chrB 57 398685 398595 Phe GAA tttaagtttg attttttctt 398648 398631 67.18 39.92 27.26 Both chrB 58 364869 364798 Met CAT tctatcttcg attgtttttt 0 0 66.52 45.66 20.86 Both chrB 59 288773 288682 Asn GTT tcacgttcaa tcttgaactt 288735 288718 67.19 39.81 27.38 Both   chrC 1 72483 72554 Met CAT aaaaattatc tttgtttttt 0 0 71.21 43.55 27.66 Both chrC 2 229164 229237 Ala AGC tttcaaaaat attttttctt 0 0 66.06 48.57 17.49 Eufind chrC 3 251371 251441 Gly GCC gaaaaaagac gtttggttac 0 0 64.77 39.40 25.37 Both chrC 4 270275 270346 Cys GCA taaaaaatca ctcttttttg 0 0 73.71 56.78 16.93 Both chrC 5 271052 271123 Cys GCA tttcaagaac tctctttttt 0 0 73.71 56.78 16.93 Both chrC 6 375795 375881 Gln CTG tatctgtcaa tttttcttct 375832 375846 56.66 36.40 20.26 Both chrC 7 417851 417921 Gly GCC tcaatatatc atttggttac 0 0 64.77 39.40 25.37 Both chrC 8 424665 424738 Ala AGC aaattttctt attttttttt 0 0 66.06 48.57 17.49 Eufind chrC 9 436858 436957 Leu AAG tcaagaaaac ttgttttttt 436896 436913 57.79 28.32 29.47 Both chrC 10 498308 498379 Thr CGT acacaatccc aattgttttt 0 0 72.11 49.40 22.71 Both chrC 11 624935 625005 Gly GCC ttgaaaacaa attcggttac 0 0 64.77 39.40 25.37 Both chrC 12 644075 644162 Tyr GTA aactcattat tgcccaagct 644114 644126 63.74 34.73 29.01 Both chrC 13 664941 665028 Trp CCA tccacacact agttcgcaag 664977 664992 61.42 44.71 16.71 Both chrC 14 694913 695008 Leu CAG ttcaagaacg ttttttgccg 694951 694964 59.92 36.83 23.09 Both chrC 15 869367 869440 Ala AGC agaatatctt tctttttgca 0 0 66.06 48.57 17.49 Eufind chrC 16 946814 946918 Leu TAG atcaaaaaaa ttttttttaa 946852 946874 57.15 36.81 20.34 Both chrC 17 963247 963317 Gly GCC tgcttaataa acttggttac 0 0 64.77 39.40 25.37 Both chrC 18 976064 976163 Leu AAG cacaatctgc ttttttgctt 976102 976119 51.86 22.00 29.86 tRNAscan chrC 19 1163356 1163443 Asp GTC ccaccatcag ttgttttttg 1163393 1163408 57.69 32.95 24.74 Both chrC 20 1238222 1238292 Gly GCC ccccaataac gcattggtta 0 0 64.77 39.40 25.37 Both chrC 21 1239251 1239339 Arg TCG ccatcttcca ctctttttgc 1239287 1239303 50.27 34.57 15.70 Both chrC 22 1408270 1408380 Pro CGG tttcatcgca attttttgtt 1408306 1408345 54.44 28.49 25.95 Both chrC 23 1444809 1444894 Pro AGG ttaacttttc ttttttggtt 1444845 1444858 70.87 51.18 19.69 Both chrC 24 1543852 1543922 Gly GCC ggcttaataa gccctggtta 0 0 64.77 39.40 25.37 Both chrC 25 1642683 1642771 Tyr GTA tcaaaaaaac tttttttcct 1642722 1642735 64.64 35.63 29.01 Both chrC 26 1672929 1673010 Ser AGA ccgtcaaact ccatcttttt 0 0 76.51 46.81 29.70 Both chrC 27 1705002 1705072 Gly GCC catagttctt gtttggttac 0 0 64.77 39.40 25.37 Both chrC 28 1707540 1707613 Ala AGC taacaattct ttcttttttg 0 0 66.06 48.57 17.49 Eufind chrC 29 1769602 1769683 Lys CTT agcatcattc attttctttt 1769639 1769647 64.64 41.95 22.69 Both chrC 30 1824434 1824521 Tyr GTA aatctgccat tttttttgtg 1824473 1824485 64.51 35.51 29.00 Both chrC 31 1841464 1841537 Ala AGC cccatctcaa gtcacgtgcc 0 0 66.06 48.57 17.49 Eufind chrC 32 1902478 1902551 Ala AGC atccaactct ctgttcttat 0 0 66.06 48.57 17.49 Eufind chrC 33 1961096 1961191 Leu CAG tccacaaaag gcgtgcgaat 1961134 1961147 62.37 32.90 29.47 Both chrC 34 1972146 1972219 Val AAC gaacttgtct cttttttgct 0 0 63.53 37.80 25.73 Both chrC 35 1976222 1976317 Leu CAG tccacattgg gcagcagagc 1976260 1976273 62.37 32.90 29.47 Both chrC 36 2043065 2043137 Arg TCT cgcaccaatc tatctctttt 0 0 73.78 61.23 12.55 Both chrC 37 2224215 2224288 Val TAC caagaaaatt ttttttggat 0 0 61.80 38.24 23.56 Both chrC 38 2272335 2272426 Asn GTT gcaaaaaccg tccgaggttt 2272373 2272390 67.19 39.81 27.38 Both chrC 39 2420271 2420352 Ser AGA atacatccat ccatttcatt 0 0 76.60 46.88 29.72 Both chrC 40 2420495 2420577 Lys CTT cgccaaaatt tgtttttgga 2420532 2420541 63.50 40.81 22.69 Both chrC 41 2429345 2429418 Ala AGC atctagaata tttttgtcct 0 0 66.06 48.57 17.49 Eufind chrC 42 2463226 2463296 Gly GCC ctcgaaaatc attcggttac 0 0 64.77 39.40 25.37 Both chrC 43 2466933 2467004 Thr AGT gacgccagga gctctttttt 0 0 74.31 47.43 26.88 Both chrC 44 2467432 2467513 Ser AGA actcattcat ccatcttttt 0 0 76.60 46.88 29.72 Both chrC 45 2468791 2468886 Leu CAG acaacaagtt ttctttttgt 2468829 2468842 59.92 36.83 23.09 Both chrC 46 2469914 2470004 Ile AAT caacatctcc tcgacccttt 2469952 2469968 66.03 36.34 29.69 Both chrC 47 2484477 2484576 Leu AAG gaataaaatt ttttttaatt 2484515 2484532 58.90 29.04 29.86 Both chrC 48 2654295 2654388 Ile AAT aaaaacaatc gttatttttg 2654333 2654352 66.69 37.00 29.69 Both chrC 49 2654472 2654566 Phe GAA aacatcgccg gtgttcagaa 2654509 2654530 67.03 39.76 27.27 Both chrC 50 2727768 2727853 Asp GTC gatctcacca agtatatgag 2727805 2727818 57.93 33.19 24.74 Both chrC 51 2766455 2766544 Tyr GTA ttaacttcca tttttttgtc 2766494 2766508 65.19 36.19 29.00 Both chrC 52 2907947 2908018 Glu TTC tcacaatctg tgtcttgttt 0 0 72.64 46.17 26.47 Both chrC 53 3089420 3089347 Val AAC aagaaaacat ctttttttgc 0 0 63.53 37.80 25.73 Both chrC 54 3062809 3062739 Gly GCC cagaatttcc gtgtggttac 0 0 64.77 39.40 25.37 Both chrC 55 2795214 2795134 Glu CTC ttttttatat tcctagttac 2795177 2795169 60.14 32.72 27.42 Both chrC 56 2767276 2767184 Ile AAT actaaaaaaa ttcttttttg 2767238 2767220 66.14 36.46 29.68 Both chrC 57 2766879 2766799 Glu CTC atcctcatcg tatcacgtga 2766842 2766834 60.41 32.99 27.42 Both chrC 58 2706742 2706656 Gln TTG tggaaccgac tatttttttg 2706705 2706691 53.66 33.42 20.24 Both chrC 59 2623900 2623819 Ser AGA gaattttcta ccatcctttt 0 0 76.51 46.81 29.70 Both chrC 60 2579404 2579317 Gly TCC aagaaaattc ttctttttgg 2579368 2579352 58.25 35.94 22.31 Both chrC 61 2579245 2579154 Ser CGA ccaacatcca gtgttacttt 2579208 2579199 76.74 44.37 32.37 Both chrC 62 2578573 2578493 Glu CTC ccttcaccag cacgtgacct 2578536 2578528 60.41 32.99 27.42 Both chrC 63 2551313 2551228 Trp CCA taaagttgtt tgttaatgac 2551277 2551264 61.66 44.96 16.70 Both chrC 64 2468057 2467984 Ala AGC actccatctt tttttaccgc 0 0 66.06 48.57 17.49 Eufind chrC 65 2447822 2447730 Lys TTT aaagtttatt tcaacggttt 2447785 2447766 74.16 51.38 22.78 Both chrC 66 2230973 2230892 Lys CTT ctcacaatac tcttttttgc 2230936 2230928 64.79 42.10 22.69 Both chrC 67 2074773 2074692 Ser AGA atccatccat ccatcttttt 0 0 76.60 46.88 29.72 Both chrC 68 1981541 1981471 Gly GCC aagaaaaaaa atccgttcag 0 0 64.77 39.40 25.37 Both chrC 69 1873308 1873235 Val AAC atcaaggttc tcctttcttc 0 0 63.53 37.80 25.73 Both chrC 70 1873222 1873136 Gln CTG ctttcttcac ttttgtcctt 1873185 1873171 56.03 35.76 20.27 Both chrC 71 1833012 1832917 Leu CAG tcagcaaaat ttgcttccaa 1832974 1832961 62.23 32.76 29.47 Both chrC 72 1808950 1808864 Pro AGG ctcatccagt acaccagctt 1808914 1808900 71.00 51.30 19.70 Both chrC 73 1803723 1803634 Ile AAT aaacatcgtc tgaataggcg 1803685 1803670 65.76 36.07 29.69 Both chrC 74 1775297 1775215 Lys CTT aagaaaaatc gttctttttt 1775260 1775251 63.50 40.81 22.69 Both chrC 75 1651851 1651778 Val AAC ataaattccc ttttttgctt 0 0 63.53 37.80 25.73 Both chrC 76 1620634 1620543 Ile AAT ctcaaaaatc tttttgttga 1620596 1620579 66.30 36.61 29.69 Both chrC 77 1448185 1448115 Gly GCC cgattaataa gccctggtta 0 0 64.77 39.40 25.37 Both chrC 78 1286740 1286670 Gly GCC cgcttaataa gcactggtta 0 0 64.77 39.40 25.37 Both chrC 79 894370 894283 Asp GTC ccaccccaca gcagtgtttc 894333 894318 56.27 31.53 24.74 Both chrC 80 643111 643019 Ile AAT atgttcactt aattttttcc 643073 643055 66.14 36.46 29.68 Both chrC 81 634744 634662 Lys CTT tttaaattct ttctttttgg 634707 634698 63.77 41.08 22.69 Both chrC 82 618438 618352 Gln TTG attaagcttc ttgtttttga 618401 618387 54.85 34.62 20.23 Both chrC 83 524803 524704 Leu AAG gaaacacaac gcagcgagtg 524765 524748 59.05 29.58 29.47 Both chrC 84 383568 383495 Met CAT tcagaaaatt tttctctttt 0 0 75.21 55.84 19.37 Both chrC 85 323200 323120 Val CAC cttccaccag tgtgacttgg 323163 323156 58.81 33.99 24.82 Both chrC 86 288874 288803 Cys GCA gtttccattc tctttttgca 0 0 73.71 56.78 16.93 Both chrC 87 286336 286251 Trp CCA taatatcact agttctaaca 286300 286287 61.66 44.96 16.70 Both chrC 88 285512 285432 Glu CTC aacaaaacag tgtgctagac 285475 285467 60.42 33.00 27.42 Both chrC 89 257659 257586 Ala AGC aaaaaaacgt tttttgctcc 0 0 66.06 48.57 17.49 Eufind chrC 90 213148 213068 Glu CTC tcacgagatt tacaatcgtc 213111 213103 61.05 33.63 27.42 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrD 1 53373 53444 Arg ACG gcgtgcggcg gaagtgctgc 0 0 69.73 43.16 26.57 Both chrD 2 198779 198861 Lys CTT tcaagaattg ttcttttttt 198816 198825 64.14 41.44 22.70 Both chrD 3 210495 210566 Ala TGC tacactcgtt ttttgccctc 0 0 60.58 53.98 6.60 Eufind chrD 4 385087 385171 Gln CTG gaaaaatcgt ttttggattt 385124 385136 56.68 36.42 20.26 Both chrD 5 435291 435390 Leu AAG ttcatcttcc tttttgccat 435329 435346 58.90 29.04 29.86 Both chrD 6 480635 480717 Lys CTT ttcagcaatt attaacgcta 480672 480681 65.69 42.99 22.70 Both chrD 7 480733 480813 Glu CTC cgctaccatt ttcagagtct 480770 480778 61.69 34.27 27.42 Both chrD 8 569754 569827 Val AAC ttaattcagc tttttgcttt 0 0 63.53 37.80 25.73 Both chrD 9 578083 578171 Arg TCG aacttccgtt cttcttttgc 578119 578135 50.27 34.57 15.70 Both chrD 10 579304 579375 Met CAT ccaatcaaaa gaattatttt 0 0 75.07 48.35 26.72 Both chrD 11 677051 677122 Cys GCA ttttaacttc agttattttt 0 0 73.71 56.78 16.93 Both chrD 12 705811 705891 Glu CTC cttgcacatt tcttggttac 705848 705856 60.91 33.49 27.42 Both chrD 13 780996 781076 Glu CTC tttcaaaaaa tagagctcag 781033 781041 60.91 33.49 27.42 Both chrD 14 1289703 1289788 Asp GTC tctcgtaaaa gtttggttac 1289740 1289753 57.93 33.19 24.74 Both chrD 15 1305306 1305387 Ser AGA aatatctcct ccattttttc 0 0 76.60 46.88 29.72 Both chrD 16 1328162 1328235 Val AAC aacacttccc cttttttgtt 0 0 63.53 37.80 25.73 Both chrD 17 1400893 1400964 Thr AGT tctcacagat atatcttttt 0 0 74.31 47.43 26.88 Both chrD 18 1489265 1489336 Thr AGT gctaaaaacc aatatatttt 0 0 74.31 47.43 26.88 Both chrD 19 1657350 1657423 Ala AGC ttctcatcaa ctttttactt 0 0 66.06 48.57 17.49 Eufind chrD 20 1657820 1657909 Tyr GTA atcacaattc tttctttttg 1657859 1657873 63.99 34.98 29.01 Both chrD 21 1725800 1725881 Ser AGA ttcaactctg tcattttttg 0 0 76.60 46.88 29.72 Both chrD 22 1742063 1742154 Phe GAA taaagtttgg ttttttaaat 1742100 1742118 69.37 42.10 27.27 Both chrD 23 1743228 1743315 His GTG aaacaaacgg accagctccg 1743265 1743280 57.78 31.31 26.47 Both chrD 24 1744095 1744182 Asp GTC catctcaaaa tctttttaca 1744132 1744147 57.05 32.31 24.74 Both chrD 25 1802994 1803089 Ser GCT aatatcttcc attttttgct 1803031 1803044 71.92 53.92 18.00 Both chrD 26 1817428 1817519 Ser CGA aatgaaacaa agctgttgga 1817465 1817474 75.96 43.59 32.37 Both chrD 27 1956174 1956255 Ser AGA caaaaattcg tcattttttg 0 0 76.60 46.88 29.72 Both chrD 28 2045280 2045360 Ser AGA tttggtaata ccattatttt 0 0 75.06 45.34 29.72 Both chrD 29 2046213 2046295 Lys CTT ataaaattca ttgtttttgc 2046250 2046259 63.50 40.81 22.69 Both chrD 30 2142183 2142254 Thr AGT tcaaaaacca tctttttttc 0 0 74.31 47.43 26.88 Both chrD 31 2492601 2492700 Leu AAG tatattttgg tttttttggc 2492639 2492656 58.90 29.04 29.86 Both chrD 32 2633141 2633214 Val AAC cataattccg ctttttgctc 0 0 63.53 37.80 25.73 Both chrD 33 2937379 2937464 Pro AGG tcaaaaaatt aattattctt 2937415 2937428 70.87 51.18 19.69 Both chrD 34 2996512 2996602 Val CAC ctccaccaag tgtgacctat 2996549 2996566 58.59 33.78 24.81 Both chrD 35 3060624 3060712 Arg TCG gcacattcct tttttccagc 3060660 3060676 49.49 33.80 15.69 Both chrD 36 3142358 3142439 Ser AGA gtctacacat ccatcttttt 0 0 76.60 46.88 29.72 Both chrD 37 3204602 3204675 Ala AGC cacaaaaaca aatttttttc 0 0 61.36 48.81 12.55 Eufind chrD 38 3375865 3375938 Val AAC cgcaatcggc ctcttttttg 0 0 65.61 39.88 25.73 Both chrD 39 3463242 3463162 Glu CTC gttttaacct tcttggttac 3463205 3463197 60.77 33.35 27.42 Both chrD 40 2846888 2846815 Val AAC ttaaattctg cttttttgtt 0 0 63.53 37.80 25.73 Both chrD 41 2819302 2819216 His GTG aatacccaca gcgctgttga 2819265 2819251 59.25 33.17 26.08 Both chrD 42 2566917 2566846 His GTG aaaaaagccc atttcttttt 0 0 66.09 40.02 26.07 Both chrD 43 2221409 2221336 Ala AGC ctccaatcat tacaagccaa 0 0 66.06 48.57 17.49 Eufind chrD 44 2048385 2048314 His GTG tttatcgcca ttctttttcc 0 0 66.09 40.02 26.07 Both chrD 45 2044290 2044217 Val AAC cttcacagct ctttttgccc 0 0 63.53 37.80 25.73 Both chrD 46 1793890 1793797 Arg TCG caccacatcc ttctttttta 1793854 1793833 49.27 33.58 15.69 Both chrD 47 1742440 1742360 Lys CTT gattaatcaa gcttacaaag 1742403 1742396 64.38 41.69 22.69 Both chrD 48 1733853 1733773 Gly TCC gcatgtttcg atcaccccaa 1733817 1733808 56.90 34.11 22.79 Both chrD 49 1659353 1659282 Ala TGC ctaaagttgc cacttgtttt 0 0 60.58 53.98 6.60 Eufind chrD 50 1658396 1658316 Gly TCC tacaccgtcc ttttttgcac 1658360 1658351 56.55 33.75 22.80 Both chrD 51 1310257 1310186 Thr AGT agtatctctc attttctttt 0 0 74.31 47.43 26.88 Both chrD 52 1303221 1303136 Asp GTC gtataagcga gtttggttac 1303184 1303171 57.16 32.41 24.75 Both chrD 53 1209796 1209711 Pro AGG attatcggtt accctttcta 1209760 1209747 70.73 51.04 19.69 Both chrD 54 1209699 1209611 Tyr GTA ccctttctat tatctttttg 1209660 1209647 64.14 35.13 29.01 Both chrD 55 1203512 1203441 Thr AGT accaacatct ggagcatcac 0 0 74.31 47.43 26.88 Both chrD 56 1030813 1030729 Asp GTC ctctcaccaa tttctttttg 1030776 1030764 57.66 32.92 24.74 Both chrD 57 1028206 1028112 Val CAC cttcaccccc tcttttttgc 1028169 1028148 56.89 31.67 25.22 Both chrD 58 756155 756066 Phe GAA tcagaaattc atacgtcggc 756118 756102 69.61 42.35 27.26 Both chrD 59 667304 667223 Ser AGA gtccacacat ccatcttttt 0 0 76.60 46.88 29.72 Both chrD 60 408095 408013 Lys CTT catatattcc ttttttcaaa 408058 408049 64.27 41.58 22.69 Both chrD 61 210924 210839 Trp CCA tccacacact agttctcacg 210888 210875 61.52 44.82 16.70 Both   chrE 1 36748 36828 Glu CTC tttaaattat tcttggttac 36785 36793 60.77 33.35 27.42 Both chrE 2 43742 43814 Val CAC tttattaaca tttttctttt 0 0 69.00 45.38 23.62 Both chrE 3 192166 192237 His GTG ctaaataggc ttattttttg 0 0 66.09 40.02 26.07 Both chrE 4 405759 405830 Thr AGT aagttttcca tttttttttc 0 0 74.31 47.43 26.88 Both chrE 5 718892 718977 Pro AGG aagaaattgc aaattcttct 718928 718941 70.87 51.18 19.69 Both chrE 6 718993 719082 Tyr GTA cttctttcat ttctttttga 719032 719046 63.99 34.98 29.01 Both chrE 7 800521 800613 Ile AAT ttcagaaatc ttttctcctt 800559 800577 66.14 36.46 29.68 Both chrE 8 800624 800708 Gln CTG ttttctcctt ttttggtgag 800661 800673 56.27 36.00 20.27 Both chrE 9 916365 916464 Leu AAG gaaacaccaa gcagttcccg 916403 916420 58.42 28.95 29.47 Both chrE 10 975849 975934 Lys CTT attaaaaaat tatttttaaa 975886 975898 65.73 43.03 22.70 Both chrE 11 990930 991010 Gly TCC atcatctttc tcatttttgc 990966 990975 57.57 35.26 22.31 Both chrE 12 1018577 1018664 Asp GTC acacccagga gattcttttt 1018614 1018629 57.55 32.81 24.74 Both chrE 13 1380176 1380261 Pro AGG caagtattgt catcctttaa 1380212 1380225 71.37 51.68 19.69 Both chrE 14 1380273 1380362 Tyr GTA atcctttaat tgtctttttt 1380312 1380326 63.99 34.98 29.01 Both chrE 15 1552681 1552761 Lys CTT ttcagcgtcc atttgcgctt 1552718 1552725 65.44 42.75 22.69 Both chrE 16 1552779 1552870 Glu CTC cttttcaatt ttgtggttac 1552816 1552835 60.47 33.05 27.42 Both chrE 17 1667311 1667402 Phe GAA gaaaaaatcg atttttttgg 1667348 1667366 68.09 40.83 27.26 Both chrE 18 1728736 1728807 Met CAT acaaccttaa ttttttgtct 0 0 71.21 43.55 27.66 Both chrE 19 2041863 2041949 Asp GTC gaaaaaaacg ttctttttcc 2041900 2041914 58.06 33.32 24.74 Both chrE 20 2064302 2064382 Glu CTC ctccatccgg taaaccagaa 2064339 2064347 61.05 33.63 27.42 Both chrE 21 2193268 2193348 Glu CTC cttcatcaaa tatgtgcttg 2193305 2193313 61.05 33.63 27.42 Both chrE 22 2300984 2301057 Val TAC attaacctcc ttttttttcc 0 0 61.80 38.24 23.56 Both chrE 23 2367494 2367564 Gly GCC cgaaatttcc atttggttac 0 0 64.77 39.40 25.37 Both chrE 24 2533986 2534072 Asn GTT cataatcact atttttgtct 2534024 2534036 70.09 42.60 27.49 Both chrE 25 2567621 2567709 Arg TCG catctcaagt cttttttgcc 2567657 2567673 49.49 33.80 15.69 Both chrE 26 2608223 2608311 Tyr GTA tcaaattccg ttttttcagc 2608262 2608275 64.64 35.63 29.01 Both chrE 27 2681646 2681717 Arg CCT agcaagtccg tgtctaaaat 0 0 68.32 45.46 22.86 Both chrE 28 2831246 2831326 Glu CTC gaaaccacaa tattttttaa 2831283 2831291 60.92 33.49 27.43 Both chrE 29 2971229 2971300 Thr AGT gtttatagcc tatattttta 0 0 74.31 47.43 26.88 Both chrE 30 3012132 3012213 Ser AGA ttaaaattca tcattttttt 0 0 76.60 46.88 29.72 Both chrE 31 3029597 3029689 Ile AAT cttccagcat ttttttgctt 3029635 3029653 66.14 36.46 29.68 Both chrE 32 3031081 3031161 Glu CTC acacaagttt tcgctgctgt 3031118 3031126 60.77 33.35 27.42 Both chrE 33 3035669 3035754 Pro AGG ccccaactac gttcttttta 3035705 3035718 70.87 51.18 19.69 Both chrE 34 3036685 3036774 Arg TCG cgaacaacca taagcatata 3036721 3036738 50.54 34.84 15.70 Both chrE 35 3037735 3037830 Ser GCT gcacgtgcca agtacttttt 3037772 3037785 72.20 54.20 18.00 Both chrE 36 3110598 3110679 Leu CAG aagcttgttt tttttttgcc 0 0 49.77 31.10 18.67 Both chrE 37 3139935 3140016 Ser AGA tgttcgaaat ccatcttttt 0 0 76.60 46.88 29.72 Both chrE 38 3171018 3171109 Glu CTC gccaacaaaa tgtttatttt 3171055 3171074 61.11 33.69 27.42 Both chrE 39 3256854 3256926 Arg TCT gcgtgttccg cttatacact 0 0 73.78 61.23 12.55 Both chrE 40 3319880 3319968 Arg TCG ggaagtccga ttttgatttt 3319916 3319932 49.49 33.80 15.69 Both chrE 41 3531926 3532007 Glu CTC aaaaaaacct tactggttac 3531963 3531972 60.26 32.84 27.42 Both chrE 42 3551576 3551663 Asp GTC tatacgtcaa tgtgtattgc 3551613 3551628 57.05 32.31 24.74 Both chrE 43 3569382 3569452 Gly GCC catgtaatcc gtgtggttac 0 0 64.77 39.40 25.37 Both chrE 44 3585610 3585695 Asp GTC cacagacata tttcggttac 3585647 3585660 57.93 33.19 24.74 Both chrE 45 3920801 3920889 Arg TCG gtgaaaatct tttttgttca 3920837 3920853 49.49 33.80 15.69 Both chrE 46 3562979 3562908 Thr AGT aagaaatttc atttttttgg 0 0 74.31 47.43 26.88 Both chrE 47 3412285 3412212 Ala AGC gcaacttcca cttttttgtc 0 0 66.06 48.57 17.49 Eufind chrE 48 3318795 3318704 Ile AAT tttaagattc attttctctg 3318757 3318740 66.51 36.82 29.69 Both chrE 49 3318694 3318610 Gln CTG aattttctct ttttgccatt 3318657 3318645 55.63 35.37 20.26 Both chrE 50 3238509 3238439 Gly GCC cagaaaaact tttcggttac 0 0 64.77 39.40 25.37 Both chrE 51 3101343 3101271 Val CAC gtaatagcca tatcgttagg 0 0 66.64 40.90 25.74 Both chrE 52 3032429 3032344 Pro AGG caccatcagc tgtctttttg 3032393 3032380 70.87 51.18 19.69 Both chrE 53 3031462 3031381 Ser AGA aaaaaaagtt ccatcttttt 0 0 76.60 46.88 29.72 Both chrE 54 3030141 3030069 Val CAC aaaattgatc tcacagctag 0 0 66.64 40.90 25.74 Both chrE 55 2816205 2816132 Met CAT ttgtaatccc gattattttt 0 0 75.21 55.84 19.37 Both chrE 56 2652278 2652205 Ala AGC caaaaagttt ttttttagat 0 0 66.06 48.57 17.49 Eufind chrE 57 2624870 2624799 Thr AGT gcataaacct tgtatctttt 0 0 74.31 47.43 26.88 Both chrE 58 2606702 2606629 Ala AGC tttaacttca ttttttgcat 0 0 66.06 48.57 17.49 Eufind chrE 59 2547332 2547246 Trp CCA ttaaagtgtt tgtaaatgac 2547296 2547282 61.93 45.23 16.70 Both chrE 60 2408351 2408269 Lys CTT tccatcgtcc ttattttttg 2408314 2408305 64.78 42.08 22.70 Both chrE 61 2385690 2385619 His GTG tatattgcct attaattttt 0 0 66.09 40.02 26.07 Both chrE 62 2368376 2368290 Asp GTC ttaagattta tttctttttg 2368339 2368325 57.28 32.54 24.74 Both chrE 63 2275827 2275739 Arg TCG acaagtccct ctttttgtca 2275791 2275775 49.49 33.80 15.69 Both chrE 64 2017342 2017257 Pro AGG gaaaaaatct agaatttttt 2017306 2017293 70.87 51.18 19.69 Both chrE 65 1916796 1916697 Leu AAG ttcaacttcc ttttttctca 1916758 1916741 58.90 29.04 29.86 Both chrE 66 1899938 1899830 Pro CGG aataaaaact ctttttattc 1899902 1899865 57.28 31.32 25.96 Both chrE 67 1777472 1777381 Phe GAA taagaatctg attgtttttg 1777435 1777417 68.73 41.47 27.26 Both chrE 68 1775467 1775396 Glu TTC tttgaattct taattttttt 0 0 72.64 46.17 26.47 Both chrE 69 1739685 1739600 Trp CCA acgcagtgtt aattcctatg 1739649 1739636 62.16 45.46 16.70 Both chrE 70 1716550 1716459 Ser CGA gtggcccagt atttttttgc 1716513 1716504 77.37 45.00 32.37 Both chrE 71 1560846 1560724 Ile TAT tgagttcgat ttctttttgt 1560808 1560760 64.08 44.07 20.01 Both chrE 72 1493961 1493888 Ala AGC tttttaacga ttttttttgt 0 0 66.06 48.57 17.49 Eufind chrE 73 1432846 1432751 Ser TGA tggaaaaact ccatttcttt 1432808 1432796 69.41 37.59 31.82 Both chrE 74 1348328 1348257 His GTG cacacaacca agtgcctatt 0 0 66.09 40.02 26.07 Both chrE 75 1348086 1348015 His GTG cttttattaa gcatcatgct 0 0 66.09 40.02 26.07 Both chrE 76 1035518 1035423 Leu CAG gttcacgtgc gcaatgaaca 1035480 1035467 62.23 32.76 29.47 Both chrE 77 1017744 1017652 Asn GTT aaacatctga tcttttttgg 1017706 1017688 70.16 43.26 26.90 Both chrE 78 956257 956167 Asp GTC caccacacaa gttaggttac 956220 956202 58.99 34.25 24.74 Both chrE 79 845041 844968 Ala AGC ataaaaactt ctccttttgt 0 0 66.06 48.57 17.49 Eufind chrE 80 843491 843421 Gly GCC tgcttactaa gcactggtta 0 0 64.77 39.40 25.37 Both chrE 81 825475 825389 Gln CTG ctcaaatcca tttttactgc 825438 825424 55.39 35.13 20.26 Both chrE 82 547748 547660 Arg TCG tcaaattggt catttttgga 547712 547696 49.49 33.80 15.69 Both chrE 83 319607 319525 Lys CTT atatcgtcca gattttcaac 319570 319561 65.06 42.36 22.70 Both chrE 84 319513 319433 Glu CTC attttcaact aaaccttttt 319476 319468 60.77 33.35 27.42 Both chrE 85 276747 276656 Asn GTT acatcgtcca tctggttttt 276709 276692 67.19 39.81 27.38 Both chrE 86 153373 153302 Met CAT aaaaaaaccc attttttgtc 0 0 71.15 43.56 27.59 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrF 1 210086 210170 Gln CTG aaaaaaatct aaattttttg 210123 210135 55.63 35.37 20.26 Both chrF 2 215603 215711 Leu CAA aaaatagccc taattttttt 215641 215667 65.54 47.78 17.76 Both chrF 3 746080 746161 Lys CTT gaatcacaac acaaatggtc 746117 746125 64.01 41.31 22.70 Both chrF 4 1075595 1075694 Leu AAG aaacgtcacg ttcttttttg 1075633 1075650 59.06 29.59 29.47 Both chrF 5 1157107 1157178 Glu TTC attttagctt attccttttt 0 0 70.82 44.36 26.46 Both chrF 6 1161701 1161789 Arg TCG gtcaaaaaat cttttttcaa 1161737 1161753 49.49 33.80 15.69 Both chrF 7 1403926 1404017 Phe GAA tatgaatttc atttttttct 1403963 1403981 68.09 40.83 27.26 Both chrF 8 1425706 1425801 Leu CAG gttaatagtg ttatttttgc 1425744 1425757 59.92 36.83 23.09 Both chrF 9 1663817 1663909 Lys TTT ttaaccttcg ttaacattgt 1663854 1663873 74.29 51.52 22.77 Both chrF 10 2085430 2085503 Ala AGC gacacatcga ttcttttttg 0 0 66.06 48.57 17.49 Eufind chrF 11 2094566 2094647 Ser AGA gtcctaaaat ccatcttttt 0 0 76.60 46.88 29.72 Both chrF 12 2179698 2179797 Leu AAG ttcaacttcc ttttttgcac 2179736 2179753 58.90 29.04 29.86 Both chrF 13 2215135 2215225 Asn GTT acatgtacaa tctttttgtc 2215173 2215189 64.07 36.69 27.38 Both chrF 14 2293554 2293635 Ser AGA ggcatatttg ccattttttt 0 0 76.60 46.88 29.72 Both chrF 15 2390453 2390538 Pro AGG cactatcgga cttctttttg 2390489 2390502 70.87 51.18 19.69 Both chrF 16 2540511 2540602 Asn GTT aaaaaaaccg tccgattttt 2540549 2540566 67.19 39.81 27.38 Both chrF 17 2574844 2574917 Ala AGC aaataacaat tactttttta 0 0 66.06 48.57 17.49 Eufind chrF 18 2665039 2665126 Asp GTC tttattaaaa gtttggttac 2665076 2665091 57.69 32.95 24.74 Both chrF 19 2856437 2856517 Glu CTC gtttcacctt tgtacagcca 2856474 2856482 60.77 33.35 27.42 Both chrF 20 2953498 2953593 Ser GCT ttttaagtaa atatttttta 2953535 2953548 73.47 55.47 18.00 Both chrF 21 3010696 3010787 Asn GTT tttaagattt tcaaatcatt 3010734 3010751 66.55 39.17 27.38 Both chrF 22 3038165 3038238 Ala AGC ctcatcacat attttttatt 0 0 66.06 48.57 17.49 Eufind chrF 23 3218568 3218649 Ser AGA agatttttca ccattttttg 0 0 76.60 46.88 29.72 Both chrF 24 3429923 3429993 Gly GCC aaaaaaacaa gtttggttac 0 0 64.77 39.40 25.37 Both chrF 25 3657968 3658067 Leu AAG tgcatctcta acttttttgg 3658006 3658023 58.56 29.09 29.47 Both chrF 26 3667124 3667216 Tyr GTA tcgaaatatt ggatattgtt 3667163 3667180 65.43 36.42 29.01 Both chrF 27 3669911 3669999 Arg TCG aaaaaactct cttttttgtc 3669947 3669963 49.63 33.94 15.69 Both chrF 28 3672769 3672842 Val AAC ttaaaacccg tttttgcaac 0 0 63.53 37.80 25.73 Both chrF 29 3692493 3692585 Ile AAT ataactttca ttatttttga 3692531 3692549 66.14 36.46 29.68 Both chrF 30 3705120 3705204 Gln CTG cccatagcat agtcgttttc 3705157 3705169 55.77 35.51 20.26 Both chrF 31 3730131 3730228 Ser TGA agcctcacca atatgttttt 3730168 3730183 71.21 39.40 31.81 Both chrF 32 3730801 3730889 Arg TCG ctcactggta tcaatttttg 3730837 3730853 49.63 33.94 15.69 Both chrF 33 3938324 3938423 Leu AAG caaaaaaacg ttttttcatt 3938362 3938379 58.56 29.09 29.47 Both chrF 34 3982125 3982035 Ile AAT gccaaaaaac taatcttttt 3982087 3982071 66.03 36.34 29.69 Both chrF 35 3719392 3719284 Leu CAA gcagaatcct tttttttgag 3719354 3719328 66.18 48.42 17.76 Both chrF 36 3718938 3718843 Leu CAG agcacgattt ttttttgtct 3718900 3718887 60.56 37.47 23.09 Both chrF 37 3703817 3703730 Asp GTC ccatcgaaaa tatctttttg 3703780 3703765 57.70 32.95 24.75 Both chrF 38 3667371 3667291 Gly TCC aattaattct actctcctaa 3667335 3667326 56.90 34.11 22.79 Both chrF 39 3665116 3665024 Lys TTT tatgaaaaaa tactactcat 3665079 3665060 74.16 51.38 22.78 Both chrF 40 3664826 3664754 Val CAC acgtgaaaaa ctttttattt 0 0 69.00 45.38 23.62 Both chrF 41 3660647 3660559 Arg TCG aaatcacaat ttttttgcaa 3660611 3660595 49.00 33.30 15.70 Both chrF 42 3593719 3593635 Lys CTT cgttaaacat tttttagtct 3593682 3593671 63.75 41.05 22.70 Both chrF 43 3449637 3449529 Leu CAA gtaaaaatct tttgtatgca 3449599 3449573 64.90 47.14 17.76 Both chrF 44 3423047 3422964 Trp CCA taagcgtgtt ttgttcttcg 3423011 3423000 62.04 45.34 16.70 Both chrF 45 3414008 3413938 Gly GCC aacaatcagt gtttggttac 0 0 64.77 39.40 25.37 Both chrF 46 3371715 3371630 Pro AGG ttatcgtcga agctttttca 3371679 3371666 70.87 51.18 19.69 Both chrF 47 3338138 3338051 Asp GTC taacggaaaa tccttggtta 3338101 3338086 56.91 32.17 24.74 Both chrF 48 3265745 3265661 Thr TGT gtaactggtc taatttttgc 3265709 3265697 73.44 54.65 18.79 Both chrF 49 3262688 3262616 Arg TCT aacacgaccg tcaggcacgg 0 0 73.78 61.23 12.55 Both chrF 50 3217867 3217768 Leu AAG gcacatttcg ttttttgctg 3217829 3217812 58.56 29.09 29.47 Both chrF 51 3198219 3198128 Asn GTT tcacgaatca tctgatttct 3198181 3198164 67.18 39.80 27.38 Both chrF 52 3165586 3165500 Asp GTC aaacccataa tagctttttt 3165549 3165535 58.06 33.32 24.74 Both chrF 53 3118992 3118921 Ala TGC ttagaagttt cttctttttt 0 0 60.58 53.98 6.60 Eufind chrF 54 3103790 3103709 Leu CAG tggtgcatat tactttttta 0 0 64.54 33.58 30.96 Both chrF 55 3058052 3057969 Leu TAA acacgatcgc tcatattttt 0 0 68.07 41.93 26.14 Both chrF 56 3015372 3015289 Lys CTT caacaatctg ttccttttgc 3015335 3015325 64.91 42.21 22.70 Both chrF 57 2676880 2676807 Ala AGC tgtaatttca tttttgttct 0 0 66.06 48.57 17.49 Eufind chrF 58 2405498 2405428 Gly GCC caacttaccc gtttggttac 0 0 64.77 39.40 25.37 Both chrF 59 2246854 2246768 Asp GTC aattgaaaaa tcttttttgg 2246817 2246803 57.43 32.68 24.75 Both chrF 60 2090649 2090557 Ile AAT caacaacacc tttttttcca 2090611 2090593 66.14 36.46 29.68 Both chrF 61 2065167 2065095 Ala CGC ggcacaattg ttttttgccc 0 0 62.70 43.70 19.00 Both chrF 62 1877525 1877444 Lys CTT ttcaaccact tctttttgct 1877488 1877480 64.79 42.10 22.69 Both chrF 63 1816434 1816363 His GTG cttaatttaa gtttaacaac 0 0 66.09 40.02 26.07 Both chrF 64 1668579 1668506 Ala AGC taaaaattca tttttttttt 0 0 66.06 48.57 17.49 Eufind chrF 65 1515690 1515617 Val AAC aaaaaaaacg ctttttgtcg 0 0 63.53 37.80 25.73 Both chrF 66 1462765 1462680 Pro AGG taactttcgc attctttttt 1462729 1462716 70.87 51.18 19.69 Both chrF 67 1451715 1451642 Ala AGC gaaagttctt atttttttgc 0 0 66.06 48.57 17.49 Eufind chrF 68 1409506 1409414 Ile AAT tgtcaagatc ttctttttgg 1409468 1409450 66.14 36.46 29.68 Both chrF 69 1396968 1396895 Ala AGC tctaactcct ttttttttct 0 0 66.06 48.57 17.49 Eufind chrF 70 1346547 1346463 Gln CTG ttcaacatca ttccagttac 1346510 1346498 57.33 37.06 20.27 Both chrF 71 1053738 1053649 Asn GTT acatagatca tattttttgt 1053700 1053685 69.20 41.71 27.49 Both chrF 72 1023634 1023561 Val AAC ccaatatctg cttttttgct 0 0 63.53 37.80 25.73 Both chrF 73 1021277 1021192 Trp CCA acacgatgtt aattctaagg 1021241 1021228 60.39 43.68 16.71 Both chrF 74 803122 803052 Gly GCC acactgtatc atttggttac 0 0 64.77 39.40 25.37 Both chrF 75 758822 758751 Thr AGT tttaaaacca aatatttttt 0 0 74.31 47.43 26.88 Both chrF 76 689906 689811 Phe GAA attaaagttt tctttttata 689869 689847 67.84 40.57 27.27 Both chrF 77 650016 649944 Ala CGC aacagatctt ttttttactt 0 0 62.70 43.70 19.00 Both chrF 78 428567 428496 Thr AGT taacatcctt gtaaattttt 0 0 74.31 47.43 26.88 Both

---

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.