Genomic tRNA Database: Thermofilum pendens Hrk 5

tRNAscan-SE Analysis of Thermofilum pendens Hrk 5

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Predicted tRNA Secondary Structures

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chr.trna24 (1-107) Length: 107 bp
Type: Ala       Anticodon: CGC at 33-35 (33-35) Score: 67.96
Possible intron: 37-68 (37-68)
Seq: GGGCCGGTCGTCTAGTGGGAGGATTCCGCCTTCGCAagggtcgcgtaagggggcttcgatcccgagagCGGCGGAGGtCCCGGGTTCGAATCCCGGCCGGTCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......................................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCGGTCGTCTAGTGGGAGGATT[GCCTCTCCCCTCGAA]CCGCCTTCGCAAGGGTCGCGTAAGGGGGCTTCGATCCCGAGAGCGGCGGAGGTCCCGGGTTCGAATCCCGGCCGGTCCACCA

chr.trna28 (1-75)  Length: 75 bp
Type: Ala       Anticodon: GGC at 33-35 (33-35) Score: 74.83
Seq: GGGCCGGTCGTCTAGTGGGAGGATGTCCGCTTGGCATGCGGGTGGtCCCGGGTTCGAATCCCGGCCGGTCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCGGTCGTCTAGTGGGAGGATGTCCGCTTGGCATGCGGG[ACACGCGCCTCTCTCGGGAGGCGCGGGCGCGAA]TGGTCCCGGGTTCGAATCCCGGCCGGTCCACCA

chr.trna39 (1-107) Length: 107 bp
Type: Ala       Anticodon: TGC at 33-35 (33-35) Score: 70.45
Possible intron: 37-68 (37-68)
Seq: GGGCCGGTCGTCTAGTGGGAGGATACCGCCCTTGCAagggtcgcgtaaaggggcttcgatcccgagagCGGCGGAGGtCCCGGGTTCGAATCCCGGCCGGTCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......................................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCGGTCGTCTAGTGGGAGGATA[ACCCCTTTTACTCAAA]CCGCCCTTGCAAGGGTCGCGTAAAGGGGCTTCGATCCCGAGAGCGGCGGAGGTCCCGGGTTCGAATCCCGGCCGGTCCACCA

chr.trna34 (1-77)	Length: 77 bp
Type: Arg	Anticodon: CCG at 35-37 (35-37)	Score: 85.73
Seq: GGGCCCGTGGCGTAGCCaGGAAGCGTGGCGGCCTCCGGAGCCGCAGGcCCCGGGTTCAAATCCCGGCGGGCCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTGGCGTAGCCAGGAAGCGTGGCGGCCTCCGGAGCCGCAG[AGCCCGTGCGGGCGTAGCGGAA]GCCCCGGGTTCAAATCCCGGCGGGCCCGCCA

chr.trna19 (1-77)	Length: 77 bp
Type: Arg	Anticodon: CCT at 35-37 (35-37)	Score: 85.00
Seq: GGGCCCGTAGCGCAGTCaGGAAGCGCGGCGGCCTCCTAAGCCGCAGGtCCCGGGTTCGATTCCCGGCGGGCCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCGCAGTCAGGAAGCGCGGCGGCC[ACGCCTGCAGGGCGCCGCAG]TCCTAAGCCGCAGGTCCCGGGTTCGATTCCCGGCGGGCCCGCCA

chr.trna30 (1-77)	Length: 77 bp
Type: Arg	Anticodon: GCG at 35-37 (35-37)	Score: 79.27
Seq: GGGCCCGTGGCGTAGCTaGGAAGCGTGGCGGCCTGCGGAGCCGTTGGtCCCGGGTTCAAGTCCCGGCGGGCCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTGGCGTAGCTAGGAAGCGTGGCGGCCTGCGGAGCCGTTG[AGCGCTGGTGCGCGCGGAC]GTCCCGGGTTCAAGTCCCGGCGGGCCCGCCA

chr.trna8 (1-77)	Length: 77 bp
Type: Arg	Anticodon: TCG at 35-37 (35-37)	Score: 83.52
Seq: GGGCCCGTAGCGCAGTCaGGAAGCGCGGCGGCCTTCGGAGCCGTAGGtCCCGGGTTCAAGTCCCGGCGGGCCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCGCAGTCAGGAAGCGCGGCGGCCTTCGGAGCCGTAG[TGTGCCTTGAAGAGGCACGCGGAC]GTCCCGGGTTCAAGTCCCGGCGGGCCCGCCA

chr.trna15 (1-77)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (35-37)	Score: 89.78
Seq: GGGCCCGTAGCGCAGTCaGGAAGCGCGGCGGCCTTCTAAGCCGCAGGtCCCGGGTTCGAATCCCGGCGGGCCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCGCAGTCAGGAAGCGCGGCGGCC[ACGCCCGCGGGGCGCCGCAT]TTCTAAGCCGCAGGTCCCGGGTTCGAATCCCGGCGGGCCCGCCA

chr.trna5 (1-77)   Length: 77 bp
Type: Asn       Anticodon: GTT at 35-37 (35-37) Score: 86.01
Seq: GCCGGGGTAGCTCAGCCaGGTAGAGCACTCGGCTGTTAACCGAGGGGtCCCGGGTTCAAATCCCGGCCCCGGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GCCGGGGTAGCTCAGCCAGGTG[GATTCCCGCCTTAGGGAGAGCCG]AGAGCACTCGGCTGTTAAC[CGAGCCGCGTGCTACCAGTAGCACGCGCGGGAAG]GGTCCCGGGTTCAAATCCCGGCCCCGGCGCCA

chr.trna4 (1-78)   Length: 78 bp
Type: Asp       Anticodon: GTC at 35-37 (35-37) Score: 74.84
Seq: GCCCCGGTCGTCTAGTGGTccAGGATGGCGGCCTGTCGAGCCGCAGGaACCCGGGTTCGAATCCCGGCCGGGGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<......>>>>>.......<<<<<<<<<<<<....
BHB: GCCCCGGTCGTCTAGTGGTCCAGGA[AGGTTTGCCCTGGAG]TGGCGGCCTGTCGAGCCGCAG[AGCCTTAAGGCGCGGA]GAACCCGGGTTCGAATCCCGGCCGGGGCGCCA

chr.trna10 (1-105)	Length: 105 bp
Type: Cys	Anticodon: GCA at 34-36 (34-36)	Score: 59.93
Possible intron: 38-65 (38-65)
Seq: GCCGGGGTGGCCGAGAGGTcAAGGCGTCGGGCTGCAGtggctagagaaatttaccagccctggtaACCCGATATttCCCGGGTTCGAGTCCCGGCCCCGGCTCCA
Str: >>>>>>>..>>>..........<<<.>>>>>...................................<<<<<......>>>>>.......<<<<<<<<<<<<....
BHB: GCCGGGGTGGCCGAGAGGTCAAGGCGTCGG[TTCCACTCGTGAGGTGTGGAGGCGAG]GCTGCAGTGGCTAGAGAAATTTACCAGCCCTGGTAACCCGATATTTCCCGGGTTCGAGTCCCGGCCCCGGCTCCA

chr.trna12 (1-77)	Length: 77 bp
Type: Gln	Anticodon: CTG at 35-37 (35-37)	Score: 75.58
Seq: AGCCCGGTGGTGTAGCGGCcaAGCATGGCGGGCTCTGGCCCCGCAGAtCCGGGGTTCGAATCCCCGCCGGGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna1 (1-77)	Length: 77 bp
Type: Gln	Anticodon: TTG at 35-37 (35-37)	Score: 79.61
Seq: AGCCCGGTGGTGTAGCGGTcaAGCATGGCGGGCTTTGGACCCGCAGAtCCGGGGTTCGAATCCCCGCCGGGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna29 (1-79)  Length: 79 bp
Type: Glu       Anticodon: CTC at 37-39 (37-39) Score: 85.92
Seq: GCCCCGGTCGTCTAGCCcGGTcaAGGATATCGGCCTCTCGAGCCGAAGAtCCCGGGTTCAAATCCCGGCCGGGGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GCCCCGGTCGTCTAGCCCGGTCA[ACCTGCACGAGGCTGAG]AGGATATCGGCCTCTCGAGCCGAAG[AGCGGCGCAGACAGGCGCAACGCGCGGACA]TCCCGGGTTCAAATCCCGGCCGGGGCACCA

chr.trna32 (1-78)  Length: 78 bp
Type: Glu       Anticodon: TTC at 37-39 (37-39) Score: 81.06
Seq: GCCCCGGTCGTCTAGCCcGGTcaAGGATATCGGCCTTTCGAGCCGAGGACCCGGGTTCAAATCCCGGCCGGGGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
BHB: GCCCCGGTCGTCTAGCCCGGTCA[ACCTGCAGGGGGTTGAG]AGGATATCGGCCTTTCGAGCCGAGGA[GCCCGTGCGACGGCGGGCGCGGATAT]CCCGGGTTCAAATCCCGGCCGGGGCACCA

chr.trna7 (1-77)	Length: 77 bp
Type: Gly	Anticodon: CCC at 35-37 (35-37)	Score: 88.82
Seq: GCGGCCGTAGTCTAGCCtGGTAGGATGGCGGCCTCCCAAGCCGCAGAaCCCGGGTTCAAATCCCGGCGGCCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GCGGCCGTAGTCTAGCCTGGTAGGATGGCGGCCTCCCAAGCCGCAG[AGCCTTAAAGGCGCGGAA]AACCCGGGTTCAAATCCCGGCGGCCGCACCA

chr.trna25 (1-77)	Length: 77 bp
Type: Gly	Anticodon: GCC at 35-37 (35-37)	Score: 85.54
Seq: GCGGCCGTAGTCTAGTCtGGTAGGATGGCGGCCTGCCACGCCGCAGAaCCCGGGTTCAAATCCCGGCGGCCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GCGGCCGTAGTCTAGTCTGGTAGGATGGCGGCCTGCCACGCCGCAG[AGCCCTGTGTAGGCGCGGAG]AACCCGGGTTCAAATCCCGGCGGCCGCACCA

chr.trna35 (1-77)	Length: 77 bp
Type: Gly	Anticodon: TCC at 35-37 (35-37)	Score: 86.17
Seq: GCGGCCGTAGTCTAGTCtGGTAGGATGGCGGCCTTCCACGCCGCAGAaCCCGGGTTCAAATCCCGGCGGCCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GCGGCCGTAGTCTAGTCTGGTAGGATGGCGGCCTTCCACGCCGCAG[AGCCCTGTGTAGGCGCGGAG]AACCCGGGTTCAAATCCCGGCGGCCGCACCA

chr.trna16 (1-74)  Length: 74 bp
Type: His       Anticodon: GTG at 35-37 (35-37) Score: 69.08
Seq: GCCTCGGTGGTGTAGCCtGGGAACACGTCGGCCTGTGGAGCCGACCCCGGGTTCAAATCCCGGCCGAGGCCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>>>.......<<<<<<<<<<<<....
BHB: GCCTCGGTGGTGTAGCCTGGGAACACGTCGGCCTGTGGAGCCGA[AGAGGCGCCGTGAGCGGCGCGCGCGGAAA]CCCCGGGTTCAAATCCCGGCCGAGGCCCCA

chr.trna41 (1-78)  Length: 78 bp
Type: Ile       Anticodon: GAT at 36-38 (36-38) Score: 79.75
Seq: GGGCCCGTGGCTCAGCCaGGTgGGAGCACTCGGCTGATAACCGAGGGGtCCCGGGTTCAAATCCCGGCGGGCCCACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTGGCTCAGCCAGGTGG[ATTCCCGCCTTAGGGAGAGCCGA]GAGCACTCGGCTGATAACCGAG[CCGCGTGCTACCAGTAGCACGCGCGGGAA]GGGTCCCGGGTTCAAATCCCGGCGGGCCCACCA

chr.trna31 (1-88)	Length: 88 bp
Type: Leu	Anticodon: CAA at 37-39 (37-39)	Score: 77.99
Seq: GCGGGGGTGCCCGAGCCaGGTtaAAGGGGGCGGACTCAAGATCCGCTGGCGTTGGCCTgCCCGGGTTCGAATCCCGGCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
BHB: GCGGGGGTGCCCGAGCCAGGTTAAAGGGGGCGG[ACCCCTAGGGGCCTAG]ACTCAAGATCCGCTGGCGTTGGCCTGCCCGGGTTCGAATCCCGGCCCCCGCACCA

chr.trna38 (1-105)	Length: 105 bp
Type: Leu	Anticodon: CAG at 37-39 (37-39)	Score: 66.76
Possible intron: 41-57 (41-57)
Seq: GCGGGGGTGCCCGAGCTaGGTcaAAGGGGGCGGACTCAGGattacattcaatgggagCTCCGCTGGCGTTGGCCTgCCCGGGTTCGAATCCCGGCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>........................<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
BHB: GCGGGGGTGCCCGAGCTAGGTCAAAGGGGGCGG[ACCGGCCTGGAGGCTGGGCCTAT]ACTCAGGATTACATTCAATGGGAGCTCCGCTGGCGTTGGCCTGCCCGGGTTCGAATCCCGGCCCCCGCACCA

chr.trna14 (1-88)	Length: 88 bp
Type: Leu	Anticodon: GAG at 37-39 (37-39)	Score: 74.75
Seq: GCGGGGGTGCCCGAGCTaGGTcaAAGGGGGCGGACTGAGGCTCCGCTGGCGTTGGCCTgCCCGGGTTCGAATCCCGGCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna6 (1-88)   Length: 88 bp
Type: Leu       Anticodon: TAA at 37-39 (37-39) Score: 77.33
Seq: GCGGGGGTGCCCGAGCCaGGAcaAAGGGGGCGGACTTAAGATCCGCTGGCGTTGGCCTgCCCGGGTTCGAATCCCGGCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
BHB: GCGGGGGTGCCCGAGCCAGGACAAAGGGGGCGG[ACTGCCTGGACGTATGGCCCAA]ACTTAAGATCCGCTGGCGTTGGCCTGCCCGGGTTCGAATCCCGGCCCCCGCACCA

chr.trna22 (1-88)	Length: 88 bp
Type: Leu	Anticodon: TAG at 37-39 (37-39)	Score: 71.44
Seq: GCGGGGGTGCCCGAGCTaGGAcaAAGGGGGCGGACTTAGGCTCCGCTGGCGAAGGCCTgCCCGGGTTCGAATCCCGGCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna37 (1-77)  Length: 77 bp
Type: Lys       Anticodon: CTT at 35-37 (35-37) Score: 89.49
Seq: GGGCCGGTAGCTCAGCTaGGTAGAGCGGCGGGCTCTTAACCCGTAGGtCCCGGGTTCGAATCCCGGCCGGCCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCGGTAGCTCAGCTAGGTAGAGCGGCGG[TCTAAGCAACTCTGGGTCGAG]GCTCTTAACCCGTAGGTCCCGGGTTCGAATCCCGGCCGGCCCGCCA

chr.trna43 (1-77)	Length: 77 bp
Type: Lys	Anticodon: TTT at 35-37 (35-37)	Score: 92.86
Seq: GGGCCGGTAGCTCAGCTaGGTAGAGCGACGGGCTTTTAACCCGTAGGtCCCGGGTTCGAATCCCGGCCGGCCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCGGTAGCTCAGCTAGGTAGAGCGACGG[TGTGGGACAAGCTAGCCCTGCGTCGAG]GCTTTTAACCCGTAGGTCCCGGGTTCGAATCCCGGCCGGCCCGCCA

chr.trna36 (1-77)  Length: 77 bp
Type: Met       Anticodon: CAT at 35-37 (35-37) Score: 85.81
Seq: GGGCCCGTAGCTCAGCCaGGTGGAGCACCCGGCTCATAACCGGGGGGtCCCGGGTTCGAATCCCGGCGGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTCAGCCAGGTGG[ATCCCGCCGAGCCTAC]AGCACCCGGCTCATAACCGGG[TCACGCGTAGCTCGCTACGCGTGCGGGAA]GGGTCCCGGGTTCGAATCCCGGCGGGCCCACCA

chr.trna40 (1-79)	Length: 79 bp
Type: Met	Anticodon: CAT at 37-39 (37-39)	Score: 87.15
Seq: GCCGGGGTCGCCTAGCCtGGTcaAGGGCGCCGGACTCATAATCCGGTCTtCCCGGGTTCGAATCCCGGCCCCGGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna11 (1-76)  Length: 76 bp
Type: Phe       Anticodon: GAA at 34-36 (34-36) Score: 87.00
Seq: GCCGGGGTAGCTCAGCTGGGAGAGCGCTCGGCTGAAGACCGAGAGGtCCCGGGTTCAAATCCCGGCCCCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GCCGGGGTAGCTCAGCTGGGAGAGCGCTCGGCTGAAGACCGAG[TCGCGCACCCGGCATAGAGGTGCGCTGCGGGAG]AGGTCCCGGGTTCAAATCCCGGCCCCGGCACCA

chr.trna33 (1-93)	Length: 93 bp
Type: Pro	Anticodon: CGG at 35-37 (35-37)	Score: 83.34
Possible intron: 39-54 (39-54)
Seq: GGGGCCGTAGTCCAGCCtGGTAGGATGCCTGGCTCGGGatctcgaagacaagagCCCAGGTGGtCCCGGGTTCAAATCCCGGCGGCCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGGCCGTAGTCCAGCCTGGTAGGATGCCTGGC[ACGAGGCAAAAACTCGCAGGAT]TCGGGATCTCGAAGACAAGAGCCCAGGTGG[AGCCCGGGATAAACCCCCGGGCGCCGAA]TCCCGGGTTCAAATCCCGGCGGCCCCACCA

chr.trna21 (1-96)  Length: 96 bp
Type: Pro       Anticodon: GGG at 35-37 (35-37) Score: 78.10
Possible intron: 39-57 (39-57)
Seq: GGGGCCGTAGTCTAGCTtGGTAGGATGCCAGCCTGGGGgtgtaccccgtgaccggacCGCTGGTGGtCCCGGGTTCAAATCCCGGCGGCCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>..........................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGGCCGTAGTCTAGCTTGGTAGGAT[AGGCTTCCCTAAA]GCCAGCCTGGGGGTGTACCCCGTGACCGGACCGCTGG[AGCGCGCGGTTCGCCGCGCGTAGCGAG]TGGTCCCGGGTTCAAATCCCGGCGGCCCCACCA

chr.trna20 (1-93)	Length: 93 bp
Type: Pro	Anticodon: TGG at 35-37 (35-37)	Score: 83.90
Possible intron: 39-54 (39-54)
Seq: GGGGCCGTAGTCCAGCCtGGTAGGATGCCTGGCTTGGGatctcgaagacaagagCCCAGGTGGtCCCGGGTTCAAATCCCGGCGGCCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGGCCGTAGTCCAGCCTGGTAGGATGCCTGGC[ACGAGGCAAAAACTCGCAGGAC]TTGGGATCTCGAAGACAAGAGCCCAGGTGG[AGCCCGGGAAAACCCCCCGGGCGCCGAA]TCCCGGGTTCAAATCCCGGCGGCCCCACCA

chr.trna17 (1-103) Length: 103 bp
Type: Ser       Anticodon: CGA at 35-37 (35-37) Score: 66.44
Possible intron: 39-53 (39-53)
Seq: GCCGGGGTGGCCGAGCGGAccAAGGCGGTGGACTCGAGatctgtccgcgaggcATCCACTGCCCGTTAaGGGTgCCCGGGTTCGAATCCCGGCCCCGGCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>......................<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<....
BHB: GCCGGGGTGGCCGAGCGGACCAAGGCGGTGGAC[ACTTGGAGCCACAC]TCGAGATCTGTCCGCGAGGCATCCACTGCCCGTTAAGGGTGCCCGGGTTCGAATCCCGGCCCCGGCGCCA

chr.trna9 (1-88)   Length: 88 bp
Type: Ser       Anticodon: GCT at 35-37 (35-37) Score: 72.24
Seq: GCCGGGGTGGCCGAGCGGCccAAGGCGGCGGATTGCTAATCCGTTACCCGTTGaGGGTgCCCGGGTTCGAATCCCGGCCCCGGCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<....
BHB: GCCGGGGTGGCCGAGCGGCCCAAGGCGGCGGAT[TCGCGCGAAAGCGCGGACGCAG]TGCTAATCCGTTACCCGTTGAGGGTGCCCGGGTTCGAATCCCGGCCCCGGCGCCA

chr.trna18 (1-88)	Length: 88 bp
Type: Ser	Anticodon: GGA at 35-37 (35-37)	Score: 73.43
Seq: GCCGGGGTGGCCGAGCGGAccAAGGCGATGGCCTGGAGAGCCATTACCCGTTAaGGGTgCCCGGGTTCGAATCCCGGCCCCGGCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna45 (1-88)  Length: 88 bp
Type: Ser       Anticodon: TGA at 35-37 (35-37) Score: 72.61
Seq: GCCGGGGTGGCCGAGTGGActAAGGCGGTGGACTTGAGATCCACTACCCGTTAaGGGTgCCCGGGTTCAAATCCCGGCCCCGGCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<....
BHB: GCCGGGGTGGCCGAGTGGACTAAGGCGGTGGAC[ACTCATAAGCCACAG]TTGAGATCCACTACCCGTTAAGGGTGCCCGGGTTCAAATCCCGGCCCCGGCGCCA

chr.trna23 (1-101)	Length: 101 bp
Type: Thr	Anticodon: CGT at 34-36 (34-36)	Score: 77.40
Possible intron: 38-62 (38-62)
Seq: GCCCCGGTAGCTCAGCGGGtGGAGCGTCGGCCTCGTAagggaggctgcgcggggttcgagaaAGCCGAAGGtCCCGGGTTCAAATCCCGGCCGGGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>................................<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna26 (1-93)	Length: 93 bp
Type: Thr	Anticodon: GGT at 34-36 (34-36)	Score: 67.55
Possible intron: 38-54 (38-54)
Seq: GCCCCGGTAGCTCAGTTGGAAGAGCGCCGCTCTGGTAactagccctggctggaaAGGCGGAGGtCCCGGGTTCAATCCCCGGCCGGGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>........................<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna42 (1-101)	Length: 101 bp
Type: Thr	Anticodon: TGT at 34-36 (34-36)	Score: 77.32
Possible intron: 38-62 (38-62)
Seq: GCCCCGGTAGCTCAGCGGGtGGAGCGTCGGCCTTGTAagggaggctgcgcggggttcgagaaAGCCGAAGGtCCCGGGTTCGAATCCCGGCCGGGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>................................<<<<<.....>>>>>.......<<<<<<<<<<<<....
Type: Trp       Anticodon: CCA at 35-37 (35-37) Score: 85.43
Seq: GGGCCGGTAGCTCAGCCaGGTAGAGCGGCGGGCTCCAGACCCGAAGGtCCAGGGTTCAAGTCCCTGCCGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCGGTAGCTCAGCCAGGTAGAGCGGCGG[TCGAGTTAGGTCGAG]GCTCCAGACCCGAAG[AGCACTAGGTGTGCTCGGAA]GTCCAGGGTTCAAGTCCCTGCCGGCCCACCA

chr.trna27 (1-89)	Length: 89 bp
Type: Tyr	Anticodon: GTA at 33-35 (33-35)	Score: 32.76
Possible intron: 37-52 (37-52)
Seq: CCCCGCGTAGCTCAGCGGTAGAGCATCCGGCTGTAGgctatgccacgcggcgACCGGAGGGcCCCCGGTTCGAATgGCGGGCGGCCGTT
Str: .>...>>..>>>>.......<<<<.>>>>>.......................<<<<<.....>>>>..........<<<<<<...<..
BHB: CCCCGCGTAGCTCAGCGGTAGAGCATCCGGCTGTAGGCTATGCCACGCGGCG[ACCGCCCGGCGTAGACCGGGGGATGAAGCCGCGGCAGCCGGAG]ACCGGAGGGCCCCCGGTTCGAATGGCGGGCGGCCGTT

chr.trna44 (1-106) Length: 106 bp
Type: Val       Anticodon: CAC at 33-35 (33-35) Score: 63.13
Possible intron: 37-67 (37-67)
Seq: GGGCCCGTCGTCTAGCGGTtAGGAGTCGCCCTCACAagggtcgaggagggggtttcgatcctgagagCGGCGGAGGtCCCGGGTTCGAATCCCGGCGGGCCCACCA
Str: >>>>>>>...>>>........<<<.>>>>>......................................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTCGTCTAGCGGTTAGGA[TACGGGGTGGGCGCCTAAG]GTCGCCCTCACAAGGGTCGAGGAGGGGGTTTCGATCCTGAGAGCGGCGGAGGTCCCGGGTTCGAATCCCGGCGGGCCCACCA

chr.trna2 (1-75)   Length: 75 bp
Type: Val       Anticodon: GAC at 33-35 (33-35) Score: 84.80
Seq: GGGCCCGTAGTCTAGCGGTAGGATGCCTCCCTGACGCGGAGGTGAtCCCGGGTTCGAATCCCGGCGGGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGTCTAGCGGTAGGATGCC[ACGCGTGTACGCGCATCAG]TCCCTGACGCGGAGGTGATCCCGGGTTCGAATCCCGGCGGGCCCACCA

chr.trna13 (1-104) Length: 104 bp
Type: Val       Anticodon: TAC at 33-35 (33-35) Score: 68.43
Possible intron: 37-65 (37-65)
Seq: GGGCCCGTAGTCTAGTGGTtAGGAGCCGCCCTTACAaggttgaggccgggggttgaccctgggagCGGCGGTGGtCCCGGGTTCGAATCCCGGCGGGCCCACCA
Str: >>>>>>>...>>>........<<<.>>>>>....................................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGTCTAGTGGTTAGGA[TTCGTGTGCACGTGCACACGACTGAA]GCCGCCCTTACAAGGTTGAGGCCGGGGGTTGACCCTGGGAGCGGCGGTGGTCCCGGGTTCGAATCCCGGCGGGCCCACCA

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.