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tRNAscan-SE Analysis of Thermofilum pendens Hrk 5

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> UCSC Genome Browser >> Genome DB >> Genome Seq

tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 24 764492 764613 View Ala CGC ttttctggca cttctcatgt 764543 764574 67.96 56.99 10.97   chr 28 770046 769939 View Ala GGC ttttctggca gcttctccct 0 0 74.83 64.66 10.17   chr 39 392187 392065 View Ala TGC cttctgcagg ccttttcctg 392135 392104 70.45 59.47 10.98     chr 34 530904 530806 View Arg CCG ctccgtcatg cttgctcacg 0 0 85.73 73.85 11.88   chr 19 600252 600348 View Arg CCT attagaatta cacgggcggg 0 0 85.00 72.12 12.88   chr 30 652168 652073 View Arg GCG gctgggtaaa gccgcgtggt 0 0 79.27 70.20 9.07   chr 8 394340 394440 View Arg TCG tgagacgacg aagggttcgc 0 0 83.52 73.45 10.07   chr 15 477850 477946 View Arg TCT gaggaaatgt gtgcacacgt 0 0 89.78 76.90 12.88     chr 5 320654 320783 View Asn GTT tagctcccgg ctcctcccga 0 0 86.01 70.52 15.49     chr 4 268301 268409 View Asp GTC gtttgctcta ctacgcgtta 0 0 74.84 64.15 10.69     chr 10 420870 421000 View Cys GCA atctttctag gctatatgct 78 105 59.93 44.01 15.92     chr 12 460512 460588 View Gln CTG ataatgcaag cggcattcta 0 0 75.58 56.41 19.17   chr 1 42110 42186 View Gln TTG tttctaggcg cttctacggc 0 0 79.61 60.44 19.17     chr 29 709883 709759 View Glu CTC tcgcctccta gctcccactt 0 0 85.92 74.21 11.71   chr 32 538865 538745 View Glu TTC taggtgcgta tcccctgttc 0 0 81.06 69.35 11.71     chr 7 360726 360820 View Gly CCC tagaggctca cttcccatct 0 0 88.82 75.90 12.92   chr 25 796113 796209 View Gly GCC ttgaactttg ctttttcacg 0 0 85.54 72.62 12.92   chr 35 528662 528566 View Gly TCC tctggctccg cttttccgcg 0 0 86.17 73.25 12.92     chr 16 536194 536296 View His GTG ggtagaggag aatccttgtt 0 0 69.08 56.80 12.28     chr 41 268141 268012 View Ile GAT agggataagc gcttttctcg 0 0 79.75 66.63 13.12     chr 31 563512 563409 View Leu CAA ttttgaatca ttctccccgg 0 0 77.99 57.88 20.11   chr 38 426125 425998 View Leu CAG agacgcgcgg ctctccctgg 80 96 66.76 46.65 20.11   chr 14 465061 465148 View Leu GAG agacgcgcgg ttctccccag 0 0 74.75 54.64 20.11   chr 6 321677 321786 View Leu TAA gtacctgcag ccttctccca 0 0 77.33 57.22 20.11   chr 22 643896 643983 View Leu TAG ctaccggaaa cttctttggt 0 0 71.44 51.33 20.11     chr 37 438741 438644 View Lys CTT gcgacacatg tacgtccagc 0 0 89.49 79.95 9.54   chr 43 257601 257498 View Lys TTT cggcgggcat ataattccat 0 0 92.86 80.73 12.13     chr 36 489556 489435 View Met CAT aagccacgca gcttctcgct 0 0 85.81 74.27 11.54   chr 40 361817 361739 View Met CAT gggttacgaa cggtattagt 0 0 87.15 76.01 11.14     chr 11 424782 424890 View Phe GAA gagcgctata ctcttcccca 0 0 87.00 71.52 15.48     chr 33 531645 531503 View Pro CGG tgcttgcttt ctttccgggg 78 93 83.34 70.01 13.33   chr 21 643667 643802 View Pro GGG gcatacgtcc cgttacataa 643705 643723 78.10 64.76 13.34   chr 20 612342 612484 View Pro TGG gcttgctttg tctccagata 612380 612395 83.90 70.57 13.33     chr 17 536447 536563 View Ser CGA atctttttag ttctctgcct 536498 536512 66.44 40.38 26.06   chr 9 394845 394954 View Ser GCT tctttcacgc tgcctcttag 0 0 72.24 50.44 21.80   chr 18 538958 539045 View Ser GGA ctaacgcgcg ttctccgatc 0 0 73.43 47.83 25.60   chr 45 231236 231134 View Ser TGA gtttacgtga ctcccagttc 0 0 72.61 46.41 26.20     chr 23 743058 743158 View Thr CGT atggtcttta acgcgcggcg 743095 743119 77.40 66.16 11.24   chr 26 841812 841904 View Thr GGT atagagggta tgcgtcatgt 841849 841865 67.55 57.42 10.13   chr 42 257851 257751 View Thr TGT atagccttta tgccgttttc 257814 257790 77.32 66.08 11.24     chr 3 267813 267924 View Trp CCA ctgttacaga tagctttaag 0 0 85.43 73.85 11.58     chr 27 892743 892874 View Tyr GTA cggggaccag tcgctttcct 77 92 32.76 26.96 5.80     chr 44 257417 257293 View Val CAC gaaaagggtt tttttcctgt 257363 257333 63.13 55.46 7.67   chr 2 242880 242973 View Val GAC gctctagaaa ctcctcggcg 0 0 84.80 71.55 13.25   chr 13 462671 462800 View Val TAC aagactagca attttctgcg 462732 462760 68.43 59.76 8.67   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.