Genomic tRNA Database: Thermofilum pendens Hrk 5

tRNAscan-SE Analysis of Thermofilum pendens Hrk 5

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Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<................>.>>>........................................................<<<.<................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTCGTCTAGTGGGA.GGATG...............TCCGCTTGGCAtgcgggacacgcgcctctctcgggaggcgcggg................CGCGAATG...........GtCCCGGGTTCGAATCCCGGCCGGTCCACCA chr.trna28-AlaGGC Sc: 74.83  

>>>>>>>..>>>>........<<<<................>>>>>........................................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTCGTCTAGTGGGA.GGATTgcctctcccctcgaaCCGCCTTCGCAagggtcgcgtaagggggcttcgatcccgagag.................CGGCGGAG...........GtCCCGGGTTCGAATCCCGGCCGGTCCACCA chr.trna24-AlaCGC Sc: 67.96  

>>>>>>>..>>>>........<<<<.................>.>>........................................................<<.<.................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTCGTCTAGTGGGA.GGATA...............AC.CCCTTTTActcaaaccgcccttgcaagggtcgcgtaaaggggcttcgatcccgagagCGGCGGAG...........GtCCCGGGTTCGAATCCCGGCCGGTCCACCA chr.trna39-AlaTGC Sc: 70.45  



Arg tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>................................<<<<<....>..>>............<<..<.....>>>>>.......<<<<<.<<<<<<<....
GGGCCCGTGGCGTAGCTaGGAAGCGTGGCGGCCTGCGG.........................AGCCGTTGAGCGCTGGTGCg.......CGCGGACGtCCCGGGTTCAAGTCCCGG.CGGGCCCGCCA chr.trna30-ArgGCG Sc: 79.27  

>>>>>>>..>>>>.........<<<<.>>>>>................................<<<<<....>>..................<<.....>>>>>.......<<<<<.<<<<<<<....
GGGCCCGTGGCGTAGCCaGGAAGCGTGGCGGCCTCCGG.........................AGCCGCAGAGCCCGTGCGGgcgta....GCGGAAGcCCCGGGTTCAAATCCCGG.CGGGCCCGCCA chr.trna34-ArgCCG Sc: 85.73  

>>>>>>>..>>>>.........<<<<..>.>>................................<<.<................................>>>>>.......<<<<<.<<<<<<<....
GGGCCCGTAGCGCAGTCaGGAAGCGCGGCGGCCTTCGGagccgtagtgtgccttgaagaggcaCGCGGAC...........................GtCCCGGGTTCAAGTCCCGG.CGGGCCCGCCA chr.trna8-ArgTCG Sc: 83.52  

>>>>>>>..>>>>.........<<<<.>>>>>................................<<<<<...............................>>>>>.......<<<<<.<<<<<<<....
GGGCCCGTAGCGCAGTCaGGAAGCGCGGCGGCCACGCCtgcagggcgccgcagtccta.....AGCCGCAG..........................GtCCCGGGTTCGATTCCCGG.CGGGCCCGCCA chr.trna19-ArgCCT Sc: 85.00  

>>>>>>>..>>>>.........<<<<.>>>>>................................<<<<<...............................>>>>>.......<<<<<.<<<<<<<....
GGGCCCGTAGCGCAGTCaGGAAGCGCGGCGGCCACGCCcgcggggcgccgcatttcta.....AGCCGCAG..........................GtCCCGGGTTCGAATCCCGG.CGGGCCCGCCA chr.trna15-ArgTCT Sc: 89.78  



Asn tRNAs



>>>>>>>..>.>>.........<<.<>>>>>...........................................................<<<<<..................>>>>>.......<<<<<.<<<<<<<....
GCCGGGGTAGCTCAGCCaGGTGGATTCCCGCCTTAGGgagagccgagagcactcggctgttaaccgagccgcgtgctaccagtagcacgCGCGGGAagG...........GtCCCGGGTTCAAATCCCGG.CCCCGGCGCCA chr.trna5-AsnGTT Sc: 86.01  



Asp tRNAs



>>>>>>>...>>>..........<<<....>>>>.......................................<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCCGGTCGTCTAGTGGTccA.GGAAGgtTTGCCCTGGAGtggcggcctgtcgagccgcagagccttaagGCGCGGAG...........AaCCCGGGTTCGAATCCCGGCCGGGGCGCCA chr.trna4-AspGTC Sc: 74.84  



Cys tRNAs



>>>>>>>..>>>...........<<<.>>>>................................................................<<<<.................>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGGCCGAGAGGTcA.AGGCGTCGGTTCCActcgtgaggtgtggaggcgaggctgcagtggctagagaaatttaccagccctggtaA.CCCGATA...........TttCCCGGGTTCGAGTCCCGGCCCCGGCTCCA chr.trna10-CysGCA Sc: 59.93  



Gln tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGCCCGGTGGTGTAGCGGCcaA.GCATGGCGGGCTCTGGCCCCGCAG...........AtCCGGGGTTCGAATCCCCGCCGGGCTACCA chr.trna12-GlnCTG Sc: 75.58  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGCCCGGTGGTGTAGCGGTcaA.GCATGGCGGGCTTTGGACCCGCAG...........AtCCGGGGTTCGAATCCCCGCCGGGCTACCA chr.trna1-GlnTTG Sc: 79.61  



Glu tRNAs


>>>>>>>..>..>............................<..<...>>.>...................................................<.<<..>...........<...>>>>>.......<<<<<.<<<<<<<....
GCCCCGGTCGTCTAGCCcGGTcA..................ACCTGcaCGAGGCTGAGAggatatcggcctctcgagccgaagagcggcgcagacaggcgcAACGCGCGG..........aCAtCCCGGGTTCAAATCCCGG.CCGGGGCACCA chr.trna29-GluCTC Sc: 85.92  

>>>>>>>..>>>>............................<<<<...>>.>>.................................................<<.<<..................>>>>>.......<<<<<.<<<<<<<....
GCCCCGGTCGTCTAGCCcGGTcAacctgcagggggttgagaGGATA..TCGGCCTTTCGagccgaggagcccgtgcgacggcggg................CGCGGAT..............AtCCCGGGTTCAAATCCCGG.CCGGGGCACCA chr.trna32-GluTTC Sc: 81.06  



Gly tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>.>>......<<.<<.....>>>>>.......<<<<<<<<<<<<....
GCGGCCGTAGTCTAGTCtGGTAGGATGGCGGCCTGCCACGCCGCAGAGCCCTGtGTAGgCGCGGAGAaCCCGGGTTCAAATCCCGGCGGCCGCACCA chr.trna25-GlyGCC Sc: 85.54  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>.>........<.<<.....>>>>>.......<<<<<<<<<<<<....
GCGGCCGTAGTCTAGCCtGGTAGGATGGCGGCCTCCCAAGCCGCAGAGCCTT..AAAGgCGCGGAAAaCCCGGGTTCAAATCCCGGCGGCCGCACCA chr.trna7-GlyCCC Sc: 88.82  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>.>>......<<.<<.....>>>>>.......<<<<<<<<<<<<....
GCGGCCGTAGTCTAGTCtGGTAGGATGGCGGCCTTCCACGCCGCAGAGCCCTGtGTAGgCGCGGAGAaCCCGGGTTCAAATCCCGGCGGCCGCACCA chr.trna35-GlyTCC Sc: 86.17  



His tRNAs



>>>>>>>..>>>>.........<<<<.>>.>>..................................<<.<<...............>>>>>.......<<<<<.<<<<<<<....
GCCTCGGTGGTGTAGCCtGGGAACACGTCGGCCTGTGGagccgaagaggcgccgtgagcggcgcgCGCGGAA...........AcCCCGGGTTCAAATCCCGG.CCGAGGCCCCA chr.trna16-HisGTG Sc: 69.08  



Ile tRNAs



>>>>>>>..>.>>.........<<.<>>>>>...........................................................<<<<<..................>>>>>.......<<<<<.<<<<<<<....
GGGCCCGTGGCTCAGCCaGGTGGATTCCCGCCTTAGGgagagccgagagcactcggctgataaccgagccgcgtgctaccagtagcacgCGCGGGAagG...........GtCCCGGGTTCAAATCCCGG.CGGGCCCACCA chr.trna41-IleGAT Sc: 79.75  




Leu tRNAs



>>>>>>>..>>>.............<<<.>>>>>...............................................<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCTaGGTcaAAGGGGGCGGACTGAGG........................................CTCCGCTGGCGTTG....GCCTgCCCGGGTTCGAATCCCGG.CCCCCGCACCA chr.trna14-LeuGAG Sc: 74.75  

>>>>>>>..>>>.............<<<.>>>>>...............................................<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCTaGGTcaAAGGGGGCGGACCGGCCtggaggctgggcctatactcaggattacattcaatgggagCTCCGCTGGCGTTG....GCCTgCCCGGGTTCGAATCCCGG.CCCCCGCACCA chr.trna38-LeuCAG Sc: 66.76  

>>>>>>>..>>>.............<<<.>>>>>...............................................<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCTaGGAcaAAGGGGGCGGACTTAGG........................................CTCCGCTGGCGAAG....GCCTgCCCGGGTTCGAATCCCGG.CCCCCGCACCA chr.trna22-LeuTAG Sc: 71.44  

>>>>>>>..>>>.............<<<.>>>>>...............................................<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGTtaAAGGGGGCGGACCCCTAggggcctagactcaag........................ATCCGCTGGCGTTG....GCCTgCCCGGGTTCGAATCCCGG.CCCCCGCACCA chr.trna31-LeuCAA Sc: 77.99  

>>>>>>>..>>>.............<<<.>>>>>...............................................<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGAcaAAGGGGGCGGACTGCCTggacgtatggcccaaacttaag..................ATCCGCTGGCGTTG....GCCTgCCCGGGTTCGAATCCCGG.CCCCCGCACCA chr.trna6-LeuTAA Sc: 77.33  



Lys tRNAs


>>>>>>>..>>>>.........<<<<.>>>>.....................................<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTAGCTCAGCTaGGTAGAGCGGCGGTCT.AAGcaactctgggtcgaggctctta.....A.CCCGTAG...........GtCCCGGGTTCGAATCCCGGCCGGCCCGCCA chr.trna37-LysCTT Sc: 89.49  

>>>>>>>..>>>>.........<<<<.>>>>.....................................<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTAGCTCAGCTaGGTAGAGCGACGGTGTGGGAcaagctagccctgcgtcgaggcttttaA.CCCGTAG...........GtCCCGGGTTCGAATCCCGGCCGGCCCGCCA chr.trna43-LysTTT Sc: 92.86  



Met tRNAs


>>>>>>>..>>>>...........<<<<.>..>>>>...........................................<<<<.<...................>>>>>.......<<<<<<<<<<<<....
GCCGGGGTCGCCTAGCCtGGTcaAGGGCGC..CGGACTCATA....................................ATCCG.GTC..............TtCCCGGGTTCGAATCCCGGCCCCGGCACCA chr.trna40-MetCAT Sc: 87.15  
>>>>>>>..>.>>...........<<.<.>..>>.>...........................................<.<<.<...................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCaGGT..GGATCCCgcCGAGCCTACAgcacccggctcataaccgggtcacgcgtagctcgctACGCGtGCGGGA........AGGGtCCCGGGTTCGAATCCCGGCGGGCCCACCA chr.trna36-MetCAT Sc: 85.81  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>............................................<<<................>>>>>.......<<<<<<<<<<<<....
GCCGGGGTAGCTCAGCTGGGAGAGCGCTCGGCTGAAGaccgagtcgcgcacccggcatagaggtgcgctgCGGGAGAG...........GtCCCGGGTTCAAATCCCGGCCCCGGCACCA chr.trna11-PheGAA Sc: 87.00  



Pro tRNAs



>>>>>>>..>>>>.........<<<<...>>>.>.....................................................................<.<<<..................>>>>>.......<<<<<<<<<<<<....
GGGGCCGTAGTCTAGCTtGGTAGGATAggCTTCCCTAAAGccagcctgggggtgtaccccgtgaccggaccgctggagcgcgcggttcgccgcgcgt.....AGCGAGTG.............GtCCCGGGTTCAAATCCCGGCGGCCCCACCA chr.trna21-ProGGG Sc: 78.10  

>>>>>>>..>>>>.........<<<<...>>>>>.....................................................................<<<<<...>........<.....>>>>>.......<<<<<<<<<<<<....
GGGGCCGTAGTCCAGCCtGGTAGGATG..CCTGGCACGAGgcaaaaactcgcaggattcgggatctcgaagacaagagcccaggtggagcccgggataaaccCCCGGGCGCC........GA.AtCCCGGGTTCAAATCCCGGCGGCCCCACCA chr.trna33-ProCGG Sc: 83.34  

>>>>>>>..>>>>.........<<<<...>>>>>.....................................................................<<<<<...>........<.....>>>>>.......<<<<<<<<<<<<....
GGGGCCGTAGTCCAGCCtGGTAGGATG..CCTGGCACGAGgcaaaaactcgcaggacttgggatctcgaagacaagagcccaggtggagcccgggaaaacccCCCGGGCGCC........GA.AtCCCGGGTTCAAATCCCGGCGGCCCCACCA chr.trna20-ProTGG Sc: 83.90  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>....................................<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGGCCGAGCGGAccA.AGGCGATGGCCTGGAG.............................AGCCATTACCCGTTAa....GGGTgCCCGGGTTCGAATCCCGGCCCCGGCGCCA chr.trna18-SerGGA Sc: 73.43  

>>>>>>>..>>>............<<<.>>>>>....................................<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGGCCGAGCGGAccA.AGGCGGTGGACACTTGgagccacactcgagatctgtccgcgaggcATCCACTGCCCGTTAa....GGGTgCCCGGGTTCGAATCCCGGCCCCGGCGCCA chr.trna17-SerCGA Sc: 66.44  

>>>>>>>..>>>............<<<.>>>>>....................................<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGGCCGAGTGGActA.AGGCGGTGGACACTCAtaagccacagttgag..............ATCCACTACCCGTTAa....GGGTgCCCGGGTTCAAATCCCGGCCCCGGCGCCA chr.trna45-SerTGA Sc: 72.61  


>>>>>>>..>>>............<<<.>>>>>....................................<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGGCCGAGCGGCccA.AGGCGGCGGATTCGCGcgaaagcgcggacgcagtgcta.......ATCCGTTACCCGTTGa....GGGTgCCCGGGTTCGAATCCCGGCCCCGGCGCCA chr.trna9-SerGCT Sc: 72.24  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCCGGTAGCTCAGTTGGA.A.GAGCGCCGCTCTGGTAactagccctggctggaa........AGGCGGAG...........GtCCCGGGTTCAATCCCCGGCCGGGGCTCCA chr.trna26-ThrGGT Sc: 67.55  

>>>>>>>..>>>>..........<<<<.>>>>>................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCCGGTAGCTCAGC.GGGtG.GAGCGTCGGCCTCGTAagggaggctgcgcggggttcgagaaAGCCGAAG...........GtCCCGGGTTCAAATCCCGGCCGGGGCTCCA chr.trna23-ThrCGT Sc: 77.40  

>>>>>>>..>>>>..........<<<<.>>>>>................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCCGGTAGCTCAGC.GGGtG.GAGCGTCGGCCTTGTAagggaggctgcgcggggttcgagaaAGCCGAAG...........GtCCCGGGTTCGAATCCCGGCCGGGGCTCCA chr.trna42-ThrTGT Sc: 77.32  



Trp tRNAs





Tyr tRNAs



.>...>>..>>>>........<<<<.>>>>>..................................................................<<<<<................>>>>..........<<<<<<...<.....
CCCCGCGTAGCTCAGCGGTA.GAGCATCCGGCTGTAGgctatgccacgcggcgaccgcccggcgtagaccgggggatgaagccgcggcagccggagACCGGAGG...........GcCCCCGGTTCGAATgGCGGGCGGCCGTT... chr.trna27-TyrGTA Sc: 32.76  



Val tRNAs



>>>>>>>..>>>>.........<<<<.>>.>>..............................................................<<.<<......................>>>>>.......<<<<<.<<<<<<<....
GGGCCCGTAGTCTAGCGGT.A.GGATGCCACGCGTGTAcgcgcatcagtccctg.......................................ACGCGGAG...GTG...........AtCCCGGGTTCGAATCCCGG.CGGGCCCACCA chr.trna2-ValGAC Sc: 84.80  

>>>>>>>..>>>>.........<<<<.>>>>>..............................................................<<<<<....>...........<.....>>>>>.......<<<<<.<<<<<<<....
GGGCCCGTCGTCTAGCGGTtA.GGATACGGGGTGGGCGcctaaggtcgccctcacaagggtcgaggagggggtttcg................ATCCTGAGAGCGGCG.......GAGGtCCCGGGTTCGAATCCCGG.CGGGCCCACCA chr.trna44-ValCAC Sc: 63.13  

>>>>>>>..>>>>.........<<<<.>>>>................................................................<<<<......................>>>>>.......<<<<<.<<<<<<<....
GGGCCCGTAGTCTAGTGGTtA.GGAT.TCGTGTGCACGtgcacacgactgaagccgcccttacaaggttgaggccgggggttgaccctgggagCGGCGGTG.................GtCCCGGGTTCGAATCCCGG.CGGGCCCACCA chr.trna13-ValTAC Sc: 68.43

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.