Genomic tRNA Database: Thermoproteus neutrophilus V24Sta

tRNAscan-SE Analysis of Thermoproteus neutrophilus V24Sta

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Predicted tRNA Secondary Structures

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chr.trna24 (1-75)	Length: 75 bp
Type: Ala	Anticodon: CGC at 33-35 (33-35)	Score: 84.63
Seq: GGGCCGGTAGTCTAGCGGAAGGATGCCCGCCTCGCGCGCGGGAGAtCCCGGGTTCGAATCCCGGCCGGTCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCGGTAGTCTAGCGGAAGGATGCCC[AGGGGGTCTGCCCCCGCGTAG]GCCTCGCGCGCGGGAGATCCCGGGTTCGAATCCCGGCCGGTCCACCA

chr.trna8 (1-72)	Length: 72 bp
Type: Ala	Anticodon: GGC at 33-35 (33-35)	Score: 78.94
Seq: GGGCCGGTAGTCTAGCGGAAGGATGCCCGCTTGGCGTGCGGGAGAtCCCGGGTTCGAATCCCGGCCGGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna36 (1-75)	Length: 75 bp
Type: Ala	Anticodon: TGC at 33-35 (33-35)	Score: 85.56
Seq: GGGCCGGTAGTCTAGCGGAAGGATGCCCGCCTTGCACGCGGGAGAtCCCGGGTTCGAATCCCGGCCGGTCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna15 (1-78)	Length: 78 bp
Type: Arg	Anticodon: CCG at 36-38 (36-38)	Score: 85.71
Seq: GGGCCCGTAGCTCAGTCaGGAcAGAGCGGCGGCCTCCGGAGCCGTAGGtCGTGGGTTCAAATCCCACCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna7 (1-78)	Length: 78 bp
Type: Arg	Anticodon: CCT at 36-38 (36-38)	Score: 85.39
Seq: GGGCCCGTAGCTCAGTCaGGAtAGAGCGGCGGCCTCCTAAGCCGTAGGtCGTGGGTTCGAATCCCACCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTCAGTCAGGATAGAGCGGCGG[AGGACCCAGCCAGGTCCGCCGTG]CCTCCTAAGCCGTAGGTCGTGGGTTCGAATCCCACCGGGCCCGCCA

chr.trna46 (1-75)	Length: 75 bp
Type: Arg	Anticodon: GCG at 36-38 (36-38)	Score: 81.29
Seq: GGGCCCGTAGCTCAGCCtGGAtGGAGCGGCGGCCTGCGGAGCCGTAGGtCGTGGGTTCAAATCCCACCGGGCCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GGGCCCGTAGCTCAGCCTGGATGGAGCGGCGG[AGGACCTCTGGTCCGCCGAG]CCTGCGGAGCCGTAGGTCGTGGGTTCAAATCCCACCGGGCCCG

chr.trna5 (1-78)	Length: 78 bp
Type: Arg	Anticodon: TCG at 36-38 (36-38)	Score: 88.99
Seq: GGGCCCGTAGCTCAGTCaGGTcAGAGCGGCGGCCTTCGGAGCCGTAGGcCCCGGGTTCAAATCCCGGCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna43 (1-78)	Length: 78 bp
Type: Arg	Anticodon: TCT at 36-38 (36-38)	Score: 86.08
Seq: GGGCCCGTAGCTCAGCCtGGAtAGAGCGGCGGCCTTCTAAGCCGTAGGtCGTGGGTTCGAATCCCATCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTCAGCCTGGATAGAGCGGCGG[AGGACCGCCGGTCCGCCGAG]CCTTCTAAGCCGTAGGTCGTGGGTTCGAATCCCATCGGGCCCGCCA

chr.trna38 (1-76)   Length: 76 bp
Type: Asn       Anticodon: GTT at 37-39 (37-39) Score: 87.30
Seq: GCCGCCGTAGCTCAGCTcGGTtcAGAGCGGCGGGCTGTTAACCCGTAGGtCCCGGGTTCAAATCCCGGCGGCGGCG
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCCGCCGTAGCTCAGCTCGGTTCAGAGCGGCGG[AGGAGTTGAAAGGGTCCGCCGAA]GCTGTTAACCCGTAG[GCTGGGTCTCAGGCGGAA]GTCCCGGGTTCAAATCCCGGCGGCGGCG

chr.trna34 (1-78)   Length: 78 bp
Type: Asp       Anticodon: GTC at 37-39 (37-39) Score: 81.03
Seq: GCCCCGGTAGTATAGCCcGGActAGTATGCGGGCCTGTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCGCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
BHB: GCC[GCGGCCGGGAGAACGCGGCGCGAGCC]CCGGTAGTATAGCCCGGACTAGTAT[ATGGCCGTGTGCCAGCTAAA]GCGGGCCTGTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCGCCA

chr.trna4 (1-88)	Length: 88 bp
Type: Cys	Anticodon: GCA at 35-37 (35-37)	Score: 79.99
Possible intron: 39-49 (39-49)
Seq: GCCCCGGTAGCTCAGTCcGGCAGAGCGGCGGGCTGCAGaccgcgtggagACCCGTAGGtCCCGGGTTCAAATCCCGGCCGGGGCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>..................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GCCCCGGTAGCTCAGTCCGGCAGAGCGGCGG[TGGACCGCCGGTCCGCCGAA]GCTGCAGACCGCGTGGAGACCCGTAGGTCCCGGGTTCAAATCCCGGCCGGGGCTCCA

chr.trna19 (1-76)	Length: 76 bp
Type: Gln	Anticodon: CTG at 35-37 (35-37)	Score: 76.13
Seq: AGCCCGGTCGTCTAGCGGCcaAGGATGCGGGGCTCTGGACCCCGTGGCCCGGGTTCGAATCCCGGCCGGGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
BHB: AGCCCGGTCGTCTAGCGGCCAA[AGGACAACCCGGCTTG]GGATGCGGGGCTCTGGAC[AGTGCCGCCGGCACCCACAA]CCCGTGGCCCGGGTTCGAATCCCGGCCGGGCTACCA

chr.trna2 (1-76)	Length: 76 bp
Type: Gln	Anticodon: TTG at 35-37 (35-37)	Score: 76.69
Seq: AGCCCGGTCGTCTAGCGGCcaAGGATGCGGGGCTTTGGACCCCGTGGCCCGGGTTCGAATCCCGGCCGGGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
BHB: AGCCCGGTCGTCTAGCGGCCAA[AGGACAACCCGGCTTG]GGATGCGGGGCTTTGGAC[AGTGCCGCCGGCACCCACAA]CCCGTGGCCCGGGTTCGAATCCCGGCCGGGCTACCA

chr.trna42 (1-78)   Length: 78 bp
Type: Glu       Anticodon: CTC at 37-39 (37-39) Score: 87.04
Seq: GCCCCGGTAGTCTAGCCcGGAcaAGGATGCGGGCCTCTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
BHB: GCC[CTGGCGACCCGGGGGCCGTAGCCAGCCGGCTACCCCAC]CCGGTAGTCTAGCCCGG[TCGGGTGGCCTCCACCCCGG]ACAAGGATGCGGGCCTCTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCACCA

chr.trna45 (1-76)   Length: 76 bp
Type: Glu       Anticodon: TTC at 35-37 (35-37) Score: 82.25
Seq: GCCCCGGTAGTCTAGCCcGGTCGGATGTGGGCCTTTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
BHB: GCC[CCGGCTAGACGGGGGCCGTAGCCAGCCGGCTACCCCA]CCCGGTAGTCTAGCCCGGTC[GGGTGGCCTCCACCCCGGACAA]GGATGTGGGCCTTTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCACCA

chr.trna12 (1-92)	Length: 92 bp
Type: Gly	Anticodon: CCC at 37-39 (37-39)	Score: 77.85
Possible intron: 41-56 (41-56)
Seq: GCGGCGGTAGTCTAGCCtGGTttAGGATGGCGGCCTCCCAcgctacgggcgaagaaAGCCGTTGAtCCCGGGTTCGAATCCCGGCCGCCGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna14 (1-79)   Length: 79 bp
Type: Gly       Anticodon: GCC at 37-39 (37-39) Score: 88.24
Seq: GCGGCGGTAGTCTAGCCtGGTttAGGATGGCGGCCTGCCAAGCCGTTGAtCCCGGGTTCAAATCCCGGCCGCCGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GCGGCGGTAGTCTAGCCTGGTT[TGGACGACGGGCGGTCCCGTCGCCCCGGAG]TAGGATGGCGGCCTGCCAAGCCGTTGATCCCGGGTTCAAATCCCGGCCGCCGCACCA

chr.trna27 (1-91)	Length: 91 bp
Type: Gly       Anticodon: TCC at 36-38 (36-38) Score: 66.53
Possible intron: 40-55 (40-55)
Seq: GCGGCGGTCGTCTAGCTGGAgtAGGATGGCGGCCTTCCAcgcggggggcgaggagAGCCGTTGAtCCCGGGTTCAAATCCCGGCCGCCGCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......................<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCGGCGGTCGTCTAGCT[GGACGGGACGGTGGGCGTGCCCACCGCCCC]GGAGTAGGATGGCGGCCTTCCACGCGGGGGGCGAGGAGAGCCGTTGATCCCGGGTTCAAATCCCGGCCGCCGCA

chr.trna37 (1-72)	Length: 72 bp
Type: His	Anticodon: GTG at 34-36 (34-36)	Score: 71.88
Seq: GCCGCCGTAGTCTAGCGGTtAGGATGGCGGGTTGTGGTCCCGCTGACCCGGGTTCAAATCCCGGCGGCGGCC
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna29 (1-93)   Length: 93 bp
Type: Ile       Anticodon: GAT at 36-38 (36-38) Score: 86.49
Possible intron: 40-54 (40-54)
Seq: GGGCCCGTGGCTTAGCCcGGTtAGAGCGCCCGGCTGATAgccggctggtcagagACCGGGAGGtCCCGGGTTCAAATCCCGGCGGGCCCACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>......................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTGGCTTAGCCCGGTTAGAGCGCCCGGCTGATAGCCGGCTGGTCAGAGACCGGGAGGTCCCG[TCAACCCCCCGCCGAGGGGGGTTGGGATAG]GGTTCAAATCCCGGCGGGCCCACCA

chr.trna41 (1-88)	Length: 88 bp
Type: Leu	Anticodon: CAA at 37-39 (37-39)	Score: 78.84
Seq: GCGGGGGTGCCCGAGCCaGGCcaAAGGGGCAGGGCTCAAGACCCTGTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna32 (1-88)	Length: 88 bp
Type: Leu	Anticodon: CAG at 37-39 (37-39)	Score: 73.31
Seq: GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTCAGGTCCCTGTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna28 (1-88)	Length: 88 bp
Type: Leu	Anticodon: GAG at 37-39 (37-39)	Score: 73.23
Seq: GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTGAGGTCCCTGTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna13 (1-85)	Length: 85 bp
Type: Leu	Anticodon: TAA at 37-39 (37-39)	Score: 78.69
Seq: GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGCTTAAGACCCTGTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna3 (1-85)	Length: 85 bp
Type: Leu	Anticodon: TAG at 37-39 (37-39)	Score: 72.25
Seq: GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTTAGGTCCCTGTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna17 (1-96)	Length: 96 bp
Type: Lys	Anticodon: CTT at 35-37 (35-37)	Score: 80.31
Possible intron: 39-60 (39-60)
Seq: GGGCCCGTAGCTCAGCCtGGTAGAGCGGCGGGCTCTTAggggcggttgccgcccgtggaaACCCGTAGGtCGTGGGTTCGAATCCCACCGGGCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.............................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna9 (1-78)	Length: 78 bp
Type: Lys	Anticodon: TTT at 36-38 (36-38)	Score: 89.28
Seq: GGGCCCGTAGCTCAGCCcGGTtAGAGCGGCGGGCTTTTAACCCGTAGGtCGTGGGTTCGAATCCCACCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTCAGCCCGGTTAGAGCGGCGG[AGGACCCAGCCGGGTCTGCCGAG]GCTTTTAACCCGTAGGTCGTGGGTTCGAATCCCACCGGGCCCGCCA

chr.trna23 (1-77)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (35-37)	Score: 87.10
Seq: AGCGGGGTAGGCCAGCCtGGTAGGCCGCGGGGCTCATAACCCCGAGGtCCCCGGTTCAAATCCGGGCCCCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna33 (1-75)	Length: 75 bp
Type: Met	Anticodon: CAT at 36-38 (36-38)	Score: 87.68
Seq: GCGGCGGTAGCTCAGCCtGGTtAGAGCGCTCGGCTCATAACCGGGAAGcCCCGGGTTCAAATCCCGGCCGCCGCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCGGCGGTAGCTCAGCCTGGTTAGAGCGCTC[TGGGGCGGAGCCCCGCGTAA]GGCTCATAACCGGGAAGCCCCGGGTTCAAATCCCGGCCGCCGCA

chr.trna44 (1-74)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (35-37)	Score: 90.68
Seq: GGGCCCGTAGCTTAGCCcGGCAGAGCGCCCGGCTCATAACCGGGAAGtCCCGGGTTCAAATCCCGGCGGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GGGCCCGTAGCTTAGCCCGGCAGAGCGCCC[ATGGGCCTGGCCCAGCCGGGGCTGGTCCAGCGTAA]GGCTCATAACCGGGAAGTCCCGGGTTCAAATCCCGGCGGGCCCA

chr.trna22 (1-75)	Length: 75 bp
Type: Phe	Anticodon: GAA at 33-35 (33-35)	Score: 85.84
Seq: GCGGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACCGGGCGGgCCCGGGTTCAAATCCCGGCGGCCGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GCGGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGAC[AGCTCGCAGAGCCTTCAA]CGGGCGGGCCCGGGTTCAAATCCCGGCGGCCGCACCA

chr.trna26 (1-74)	Length: 74 bp
Type: Pro	Anticodon: CGG at 35-37 (35-37)	Score: 72.29
Seq: GGGGCCGTCGTTCAGCCtGGTAGGATGCGCGGTTCGGGTCCGCGTGAgCCCGGGTTCAAATCCCGGCGGCCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GGGGCCGTCGTTCAGCCTGGTAGGAT[AGGGCGGAAGCCCCCTAAA]GCGCGGTTCGGGTCCGCGTGAGCCCGGGTTC[ACGGCAGAGCCGGCCCAC]AAATCCCGGCGGCCCCA

chr.trna20 (1-97)	Length: 97 bp
Type: Pro	Anticodon: GGG at 36-38 (36-38)	Score: 78.75
Possible intron: 40-61 (40-61)
Seq: GGGGCCGTAGTCTAGCCtGGCtAGGATGCCGGCCTGGGGacaaaccccgtagttgccagcgCGCCGGTGAtCCCGGGTTCAAATCCCGGCGGCCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.............................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna31 (1-94)	Length: 94 bp
Type: Pro	Anticodon: TGG at 35-37 (35-37)	Score: 76.45
Possible intron: 39-55 (39-55)
Seq: GGGGCCGTCGTCTAGCCtGGTAGGATGCGTGGCTTGGGaccgccatcggcgggagCCCACGTGGtCCCGGGTTCAAATCCCGGCGGCCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>........................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGGCCGTCGTCTAGCCTGGTAGGAT[CGGGCGTTGCCCCCTGAG]GCGTGGCTTGGGACCGCCATCGGCGGGAGCCCACGTGGTCCCGGGTTCAAATCCCGGCGGCCCCACCA

chr.trna25 (1-102)	Length: 102 bp
Type: Ser	Anticodon: CGA at 35-37 (35-37)	Score: 66.62
Possible intron: 39-52 (39-52)
Seq: GCCGGGGTGGCCGAGCGGCccAAGGCGCGGGACTCGAGggcgcgtccgagctATCCCGTCCCCGTCAaGGGGgCGTGGGTTCAAATCCCACCCCCGGCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.....................<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna11 (1-88)	Length: 88 bp
Type: Ser	Anticodon: GCT at 36-38 (36-38)	Score: 76.56
Seq: GCCGGGGTGGCCGAGTTGGTccAAGGCGCGGGCCTGCTAAGCCCGTCCCCGTTCGGGGgCGTGGGTTCAAATCCCACCCCCGGCGCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna10 (1-88)	Length: 88 bp
Type: Ser	Anticodon: GGA at 35-37 (35-37)	Score: 75.58
Seq: GCCGGGGTGGCCGAGCGGCccAAGGCGCGGGACTGGAGATCCCGTCCCCGTCTaGGGGgCCCGGGTTCAAATCCCGGCCCCGGCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna40 (1-88)   Length: 88 bp
Type: Ser       Anticodon: TGA at 35-37 (35-37) Score: 76.03
Seq: GCCGGGGTGGCCGAGCGGCccAAGGCGCGGGACTTGAGATCCCGTCCCCGTCAaGGGGgCGTGGGTTCAAATCCCACCCCCGGCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<....
BHB: GCCGGGGTGGCCGAGCGGCCCAAGGCG[ACCTGCGCGCGGCAGGCCTGAC]CGGGACTTGAGATCCCGTCCCCGTCAAGGGGGCGTGGGTTCAAATCCCACCCCCGGCGCCA

chr.trna6 (1-89)	Length: 89 bp
Type: Thr	Anticodon: CGT at 36-38 (36-38)	Score: 80.40
Possible intron: 40-53 (40-53)
Seq: GCCCCGGTAGCTCAGCCcGGTcGGAGCGCCCGCCTCGTAgccgctggcgagacAGCGGGAGGtCCCGGGTTCGAATCCCGGCCGGGGCT
Str: >>>>>>>..>>>>..........<<<<.>>>>>.....................<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCCCCGGTAGCTCAGCCCGGTCGGAGCGCCC[TGGGGCTCAGCCCCGCGCAG]GCCTCGTAGCCGCTGGCGAGACAGCGGGAGGTCCCGGGTTCGAATCCCGGCCGGGGCT

chr.trna21 (1-74)	Length: 74 bp
Type: Thr	Anticodon: GGT at 35-37 (35-37)	Score: 88.13
Seq: GCCCCGGTAGCTCAGCCtGGTGGAGCGCCTCACTGGTAATGAGGAGGtCCCGGGTTCGAATCCCGGCCGGGGCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCCCCGGTAGCTCAGCCTGGTGGAGCGCCTCACTGGTAA[TGGCGGTCAGCCGCCTAG]TGAGGAGGTCCCGGGTTCGAATCCCGGCCGGGGCT

chr.trna35 (1-88)	Length: 88 bp
Type: Thr	Anticodon: TGT at 35-37 (35-37)	Score: 75.00
Possible intron: 39-52 (39-52)
Seq: GCCCCGGTAGCTCAGCGGGccGGAGCGCCCGCCTTGTAtccgctggcgagacAGCGGGAGGtCCCGGGTTCGAATCCCGGCCGGGGCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.....................<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCCCCGGTAGCTCAGCGGGCCGGAGCGCCC[TGGGGCTCAGCCCCGCGTAG]GCCTTGTATCCGCTGGCGAGACAGCGGGAGGTCCCGGGTTCGAATCCCGGCCGGGGCT

chr.trna16 (1-77)	Length: 77 bp
Type: Trp	Anticodon: CCA at 35-37 (35-37)	Score: 83.40
Seq: GGGGCCGTAGCTCAGCCaGGCAGAGCGGCGGGCTCCAGACCCGTAGGgCGGGGGTTCAAATCCCTCCGGCCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGGCCGTAGCTCAGCCAGGCAGAGCGGCGGGCTCCAGACCCGTAG[GCTGGCGACAGGCGGAG]GGCGGGGGTTCAAATCCCTCCGGCCCCACCA

chr.trna1 (1-117)	Length: 117 bp
Type: Tyr	Anticodon: GTA at 35-37 (35-37)	Score: 59.86
Possible intron: 39-81 (39-81)
Seq: CGGCCCGTAGCTCAGCGGTcgAGAGCGCCCGGCTGTAGacagcccctggggggacacccacacaaaaccccccaggcctatAACGGGCGGtCCCGGGTTCGAATCCCGGCGGGCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>....................................................<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna39 (1-93)	Length: 93 bp
Type: Val	Anticodon: CAC at 33-35 (33-35)	Score: 77.58
Possible intron: 37-54 (37-54)
Seq: GGGCCCGTAGTCTAGCGGTATGATGCCCGCCTCACGcggctcctcgcctgggaaCGCGGGTGGtCCCGGGTTCAAATCCCGGCGGGCCCACCA
Str: >>>>>>>..>>>.........<<<.>>>>>.........................<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna18 (1-72)	Length: 72 bp
Type: Val	Anticodon: GAC at 33-35 (33-35)	Score: 84.45
Seq: GGGCCCGTAGTCTAGCGGTAGGATGCCCGCCTGACGCGCGGGTGAcCCCGGGTTCAAATCCCGGCGGGCCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GGGCCCGTAGTCTAGCGGTAGGATGCCC[AGGGGCGGAGCCCCGCAGAG]GCCTGACGCGCGGGTGACCCCGGGTTCAAATCCCGGCGGGCCCA

chr.trna30 (1-105)	Length: 105 bp
Type: Val	Anticodon: TAC at 33-35 (33-35)	Score: 49.90
Possible intron: 37-62 (37-62)
Seq: GGGCCCGTAGTCTAGCGGCATGATGCCCGCCTTACAcgcgggtggtcccgtcaaccccccgcCGAGGGGGGTTGGgATAGGGTTCGAATCCCGGCGGGCCCACCA
Str: >>>>>>>..>>>.........<<<.>>>.>.................................<.<<<.........>.>>>.......<<<.<<<<<<<<....
BHB: GGGCCCGTAGTCTAGCGGCATGATGCCCGCCTTACA[CGGCACACCCGCAACAGCCTAAGAA]CGCGGGTGGTCCCGTCAACCCCCCGCCGAGGGGGGTTGGGATAGGGTTCGAATCCCGGCGGGCCCACCA

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.