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tRNAscan-SE Analysis of Thermoproteus neutrophilus V24Sta

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> UCSC Genome Browser >> Genome DB >> Genome Seq

tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 24 1664444 1664539 View Ala CGC ttggtggcaa accttttaaa 0 0 84.63 73.46 11.17   chr 8 1259654 1259725 View Ala GGC tcttgacatg cttcattaaa 0 0 78.94 67.53 11.41   chr 36 1106474 1106400 View Ala TGC gtgtgtggcg ccctggacgt 0 0 85.56 74.38 11.18     chr 15 1441626 1441703 View Arg CCG agctccttta gttggtttat 0 0 85.71 74.80 10.91   chr 7 1221709 1221809 View Arg CCT atgatgtgca ccacctcatc 0 0 85.39 74.48 10.91   chr 46 69955 69861 View Arg GCG acttgttgcg ctagggcagt 0 0 81.29 70.16 11.13   chr 5 1146463 1146540 View Arg TCG atgtttcagg caatttttat 0 0 88.99 79.80 9.19   chr 43 538387 538290 View Arg TCT acaaaagaca cctttaaatc 0 0 86.08 76.02 10.06     chr 38 774257 774141 View Asn GTT tctctatacc cctcaatctt 0 0 87.30 76.63 10.67     chr 34 1131819 1131696 View Asp GTC tattgaggtt gccctcctct 0 0 81.03 67.39 13.64     chr 4 1119583 1119690 View Cys GCA tggggagaca cctctacttc 79 89 79.99 70.11 9.88     chr 19 1489055 1489166 View Gln CTG gaaacagacg ccaccctcct 0 0 76.13 60.05 16.08   chr 2 1107540 1107651 View Gln TTG aaacacggcg ccgccctcac 0 0 76.69 60.61 16.08     chr 42 560164 560029 View Glu CTC acgtaggcac cctcattatg 0 0 87.04 75.28 11.76   chr 45 70341 70201 View Glu TTC gctatgtaga acgtcttctc 0 0 82.25 71.48 10.77     chr 12 1403711 1403802 View Gly CCC ggtttttcta tgggtaaagt 1403751 1403766 77.85 67.61 10.24   chr 14 1441482 1441590 View Gly GCC tctagctcac ttaatctttt 0 0 88.24 78.22 10.02   chr 27 1567319 1567199 View Gly TCC gtgtactcgg tgttacttta 1567280 1567265 66.53 56.29 10.24     chr 37 865853 865782 View His GTG ggtgagacaa cctatatcct 0 0 71.88 57.93 13.95     chr 29 1347112 1346990 View Ile GAT caatcacgaa cgtttgtaaa 1347073 1347059 86.49 75.94 10.55     chr 41 568742 568655 View Leu CAA ggcggaagtg ccccgtcacc 0 0 78.84 58.40 20.44   chr 32 1137732 1137645 View Leu CAG gaggaggtgg ccggcggtaa 0 0 73.31 52.88 20.43   chr 28 1347290 1347203 View Leu GAG aggaggcggg cttcttctca 0 0 73.23 52.80 20.43   chr 13 1403842 1403926 View Leu TAA ccctcagagg ctgtctttat 0 0 78.69 58.03 20.66   chr 3 1111720 1111804 View Leu TAG gcgtctctag cctccattat 0 0 72.25 51.59 20.66     chr 17 1468775 1468870 View Lys CTT ctaggtcgca ctaagtttta 1468813 1468834 80.31 68.72 11.59   chr 9 1269610 1269710 View Lys TTT gccaactgcc gtactcctca 0 0 89.28 77.92 11.36     chr 23 1636533 1636609 View Met CAT ttagtaccgg cgccggtttc 0 0 87.10 64.42 22.68   chr 33 1137604 1137510 View Met CAT gtagatgacg tgtctttatg 0 0 87.68 78.13 9.55   chr 44 185974 185866 View Met CAT atctgtgacg ctatctttaa 0 0 90.68 79.90 10.78     chr 22 1582343 1582435 View Phe GAA cagtataaca ctcctctgga 0 0 85.84 73.83 12.01     chr 26 1689258 1689148 View Pro CGG tctgcacaag ccacccacac 0 0 72.29 61.41 10.88   chr 20 1492363 1492459 View Pro GGG cagacccaca ctacctttat 1492402 1492423 78.75 68.54 10.21   chr 31 1270434 1270323 View Pro TGG tcggatattg cgtttttaaa 78 94 76.45 62.12 14.33     chr 25 1744634 1744533 View Ser CGA aggtgaggta agccgcttaa 1744596 1744583 66.62 42.89 23.73   chr 11 1401056 1401143 View Ser GCT aatggacgga ctatagaaac 0 0 76.56 52.98 23.58   chr 10 1400839 1400926 View Ser GGA gggggagtcg gcggctcaaa 0 0 75.58 53.57 22.01   chr 40 655649 655540 View Ser TGA atagtcaaac gcggtcttcc 0 0 68.05 43.16 24.89     chr 6 1179021 1179129 View Thr CGT ctgtcgttaa ttagaacagc 80 93 80.40 68.84 11.56   chr 21 1495532 1495623 View Thr GGT tttctaccca ctggcttccc 0 0 88.13 74.49 13.64   chr 35 1125921 1125814 View Thr TGT atggaagcaa ctttctcggc 78 91 75.00 63.44 11.56     chr 16 1444765 1444858 View Trp CCA agatggccta cctacagcat 0 0 83.40 72.75 10.65     chr 1 506083 506199 View Tyr GTA aagaaaccga tagtccttta 506121 506163 59.86 44.82 15.04     chr 39 673194 673102 View Val CAC atgatgtgca tgtgcattga 673158 673141 77.58 64.77 12.81   chr 18 1468929 1469020 View Val GAC acgtccccca tctagaggcg 0 0 84.45 72.67 11.78   chr 30 1270655 1270526 View Val TAC aagttgggca ggacccctcc 76 101 49.90 41.41 8.49   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.