GtRNAdb

tRNAscan-SE Analysis of Thermoproteus neutrophilus V24Sta

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> UCSC Genome Browser
>> Genome DB
>> Genome Seq
Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.


[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]


Ala tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.................................<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCGGTAGTCTAGCGGAA.GGATGCCCGCTTGGCG........................T..GCGGGAG...........AtCCCGGGTTCGAATCCCGGCCGGTCCA... chr.trna8-AlaGGC Sc: 78.94 >>>>>>>..>>>>........<<<<.>>>.....................................<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCGGTAGTCTAGCGGAA.GGATGCCCA...GGGGgtctgcccccgcgtaggcctcgcgC..GCGGGAG...........AtCCCGGGTTCGAATCCCGGCCGGTCCACCA chr.trna24-AlaCGC Sc: 84.63 >>>>>>>..>>>>........<<<<.>>>>>.................................<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCGGTAGTCTAGCGGAA.GGATGCCCGCCTTGCA........................C..GCGGGAG...........AtCCCGGGTTCGAATCCCGGCCGGTCCACCA chr.trna36-AlaTGC Sc: 85.56

Arg tRNAs

>>>>>>>..>>>>..........<<<<.>>>>....>....................................<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTCAGCCtGGAtGGAGCGGCGGaggaCCTCTGGtccgccgagcctgcgg..........A...GCCGTAG...........GtCGTGGGTTCAAATCCCACCGGGCCCG... chr.trna46-ArgGCG Sc: 81.29 >>>>>>>..>>>>..........<<<<.>>>>....>....................................<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTCAGTCaGGAcAGAGCGGCGG....CCTCCGG..........................A...GCCGTAG...........GtCGTGGGTTCAAATCCCACCGGGCCCGCCA chr.trna15-ArgCCG Sc: 85.71 >>>>>>>..>>>>..........<<<<.>>>>....>....................................<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTCAGTCaGGTcAGAGCGGCGG....CCTTCGG..........................A...GCCGTAG...........GcCCCGGGTTCAAATCCCGGCGGGCCCGCCA chr.trna5-ArgTCG Sc: 88.99 >>>>>>>..>>>>..........<<<<.>>>>..........................................<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTCAGTCaGGAtAGAGCGGCGG....A...GGAcccagccaggtccgccgtgcctcctaA...GCCGTAG...........GtCGTGGGTTCGAATCCCACCGGGCCCGCCA chr.trna7-ArgCCT Sc: 85.39 >>>>>>>..>>>>..........<<<<.>>>>..........................................<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTCAGCCtGGAtAGAGCGGCGG....A...GGAccgccggtccgccgagccttcta...A...GCCGTAG...........GtCGTGGGTTCGAATCCCATCGGGCCCGCCA chr.trna43-ArgTCT Sc: 86.08

Asn tRNAs

>>>>>>>..>>>>...........<<<<..>>......................................................<<.................>>>>>.......<<<<<<<<<<<<.... GCCGCCGTAGCTCAGCTcGGTtcAGAGCGGCGGAGGagttgaaagggtccgccgaagctgttaacccgtaggctgggtctcA..GGCGGAA...........GtCCCGGGTTCAAATCCCGGCGGCGGCG... chr.trna38-AsnGTT Sc: 87.30

Asp tRNAs

>>>.>>>>>>.........<<<<.>>.>>............................................................<<.<<...............>>>>>.......<<<<<...<<.<<<.... GCCGCGGCCGGGAGAAcG.CGGCGCGAGCCCCGGtagtatagcccggactagtatatggccgtgtgccagctaaagcgggcctgtcgA.GCCCGTG...........ACCCGGGTTCAAATCCCGG..CCGGGGCGCCA chr.trna34-AspGTC Sc: 81.03

Cys tRNAs

>>>>>>>..>>>>.........<<<<.>>>>..........................................<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCGGTAGCTCAGTCcGGCAGAGCGGCGGTGGAccgccggtccgccgaagctgcagaccgcgtggagA..CCCGTAG...........GtCCCGGGTTCAAATCCCGGCCGGGGCTCCA chr.trna4-CysGCA Sc: 79.99

Gln tRNAs

>>>>>>>..>>>>...........<<<<...>.>>..........................................<<.<...............>>>>>.......<<<<<<<<<<<<.... AGCCCGGTCGTCTAGCGGCcaaA.GGACAacCCGGCTTGGGAtgcggggctctggacagtgccgccggcacccacAACCCGTG...........GCCCGGGTTCGAATCCCGGCCGGGCTACCA chr.trna19-GlnCTG Sc: 76.13 >>>>>>>..>>>>...........<<<<...>.>>..........................................<<.<...............>>>>>.......<<<<<<<<<<<<.... AGCCCGGTCGTCTAGCGGCcaaA.GGACAacCCGGCTTGGGAtgcggggctttggacagtgccgccggcacccacAACCCGTG...........GCCCGGGTTCGAATCCCGGCCGGGCTACCA chr.trna2-GlnTTG Sc: 76.69

Glu tRNAs

>>>>>>>.....>...........<....>.>>>..................................................................<<<.<...............>>>>>.......<<<<<<<<<<<<.... GCCCTGGCGACCCGGGGGCcgtA.GCCAGCCGGCTACCCCacccggtagtctagcccggtcgggtggcctccaccccggacaaggatgcgggcctctcgAGCCCGTG...........ACCCGGGTTCAAATCCCGGCCGGGGCACCA chr.trna42-GluCTC Sc: 87.04 >>>>>>>...>.>...........<.<..>.>>>..................................................................<<<.<...............>>>>>.......<<<<<<<<<<<<.... GCCCCGGCTAGACGGGGGCcgtA.GCCAGCCGGCTACCCCacccggtagtctagcccggtcgggtggcctccaccccggacaaggatgtgggcctttcgAGCCCGTG...........ACCCGGGTTCAAATCCCGGCCGGGGCACCA chr.trna45-GluTTC Sc: 82.25

Gly tRNAs

>>>>>>>..>>>>...........<<<<.>>>>..........................................................<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGCGGTAGTCTAGCCtGGTt.TGGACGACGGGCggTCCCGtcgccccggagtaggatggcggcctgcca..................AGCCGTTG...........AtCCCGGGTTCAAATCCCGGCCGCCGCACCA chr.trna14-GlyGCC Sc: 88.24 >>>>>>>..>>>>...........<<<<.>>>>>........................................................<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGCGGTAGTCTAGCCtGGTttAGGATGGCGGCC..TCCCAcgctacgggcgaagaa...............................AGCCGTTG...........AtCCCGGGTTCGAATCCCGGCCGCCGCA... chr.trna12-GlyCCC Sc: 77.85 >>>>>>>..>>>>...........<<<<.>>>>..........................................................<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGCGGTCGTCTAGCT.GGAc.GGGACGGTGGGC..GTGCCcaccgccccggagtaggatggcggccttccacgcggggggcgaggagAGCCGTTG...........AtCCCGGGTTCAAATCCCGGCCGCCGCA... chr.trna27-GlyTCC Sc: 66.53

His tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GCCGCCGTAGTCTAGCGGTtA.GGATGGCGGGTTGTGGTCCCGCTG...........ACCCGGGTTCAAATCCCGGCGGCGGCC... chr.trna37-HisGTG Sc: 71.88

Ile tRNAs

>>>>>>>..>>>>..........<<<<.>>>....................................................<<<................>.>>>.......<<<.<<<<<<<<.... GGGCCCGTGGCTTAGCCcGGTtAGAGCGCCCGGCTGATAgccggctggtcagagaccgggaggtcccgtcaaccccccgcCGAGGGGGGTTG.......GgATAGGGTTCAAATCCCGGCGGGCCCACCA chr.trna29-IleGAT Sc: 86.49

Leu tRNAs

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTGAGGTCCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCACCA chr.trna28-LeuGAG Sc: 73.23 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTCAGGTCCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCACCA chr.trna32-LeuCAG Sc: 73.31 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTTAGGTCCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCA... chr.trna3-LeuTAG Sc: 72.25 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGGGGTGCCCGAGCCaGGCcaAAGGGGCAGGGCTCAAGACCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCACCA chr.trna41-LeuCAA Sc: 78.84 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGCTTAAGACCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCA... chr.trna13-LeuTAA Sc: 78.69

Lys tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>....................................<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTCAGCCtGGT.AGAGCGGCGGGCTCTTAggggcggttgccgcccgtggaa....A...CCCGTAG...........GtCGTGGGTTCGAATCCCACCGGGCCCG... chr.trna17-LysCTT Sc: 80.31 >>>>>>>..>>>>..........<<<<.>>>>......................................<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTCAGCCcGGTtAGAGCGGCGGA...GGAcccagccgggtctgccgaggcttttaA...CCCGTAG...........GtCGTGGGTTCGAATCCCACCGGGCCCGCCA chr.trna9-LysTTT Sc: 89.28

Met tRNAs

>>>>>>>..>>>>..........<<<<.>>>...................................................<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTTAGCCcGGC.AGAGCGCCCA...TGGGcctggcccagccggggctggtccagcgtaaggctcataA..CCGGGAA...........GtCCCGGGTTCAAATCCCGGCGGGCCCA... chr.trna44-MetCAT Sc: 90.68 >>>>>>>..>>>>..........<<<<.>>>.>...............................................<.<<<................>>>>>.......<<<<<<<<<<<<.... GCGGCGGTAGCTCAGCCtGGTtAGAGCGCTCTGGGGCGGagccccgcgtaaggctcata..................A..CCGGGAA...........GcCCCGGGTTCAAATCCCGGCCGCCGCA... chr.trna33-MetCAT Sc: 87.68 >>>>>>>..>>>>..........<<<<.>>>>>...............................................<<<<<................>>>>>.......<<<<<<<<<<<<.... AGCGGGGTAGGCCAGCCtGGT.AGGCCGCGGGGCTCATA......................................A..CCCCGAG...........GtCCCCGGTTCAAATCCGGGCCCCGCTACCA chr.trna23-MetCAT Sc: 87.10

Phe tRNAs

>>>>>>>..>>>>........<<<<.>>>>...........................<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGCCGTAGCTCAGCGGGA.GAGCGCCCGGCTGAAGacagctcgcagagccttcAACGGGCG...........GgCCCGGGTTCAAATCCCGGCGGCCGCACCA chr.trna22-PheGAA Sc: 85.84

Pro tRNAs

>>>>>>>..>>>>..........<<<<....................>>>>>.........................................<<<<..<................>>>>>.........................<<<<<.<<<<<<<.... GGGGCCGTAGTCTAGCCtGGCtAGGATG...................CCGGCCTGGGGacaaaccccgtagttgccagcg............CGCCG..GTG...........AtCCCGGGTT..................CAAATCCCGG.CGGCCCCA... chr.trna20-ProGGG Sc: 78.75 >>>>>>>..>>>>..........<<<<....................>>>>>.........................................<<<<..<................>>>>>.........................<<<<<.<<<<<<<.... GGGGCCGTCGTTCAGCCtGGT.AGGATAgggcggaagccccctaaagCGCGGTTCGGG..................................TCCGC..GTG...........AgCCCGGGTTcacggcagagccggcccaCAAATCCCGG.CGGCCCCA... chr.trna26-ProCGG Sc: 72.29 >>>>>>>..>>>>..........<<<<....................>>>>>.........................................<<<<..<................>>>>>.........................<<<<<.<<<<<<<.... GGGGCCGTCGTCTAGCCtGGT.AGGAT....................CGGGCGTTGCCccctgaggcgtggcttgggaccgccatcggcgggAGCCCacGTG...........GtCCCGGGTT..................CAAATCCCGG.CGGCCCCACCA chr.trna31-ProTGG Sc: 76.45

SeC tRNAs

Ser tRNAs

>>>>>>>..>>>.............<<<.......................>>>>>.....................<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<.... GCCGGGGTGGCCGAGC.GGCccA.AGGCG......................CGGGACTGGAG..............ATCCCGTCCCCGTCTa....GGGGgCCCGGGTTCAAATCCCGGCCCCGGCGCCA chr.trna10-SerGGA Sc: 75.58 >>>>>>>..>>>.............<<<.......................>>>>>.....................<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<.... GCCGGGGTGGCCGAGC.GGCccA.AGGCG......................CGGGACTCGAGggcgcgtccgagctATCCCGTCCCCGTCAa....GGGGgCGTGGGTTCAAATCCCACCCCCGGCGCCA chr.trna25-SerCGA Sc: 66.62 >>>>>>>..>>>.............<<<.......................>>>>>.....................<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<.... GCCGGGGTGGCCGAGC.GGCccA.AGGCGacctgcgcgcggcaggcctgacCGGGACTTGAG..............ATCCCGTCCCCGTCAa....GGGGgCGTGGGTTCAAATCCCACCCCCGGCGCCA chr.trna40-SerTGA Sc: 76.03 >>>>>>>..>>>.............<<<.......................>>>>>.....................<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<.... GCCGGGGTGGCCGAGTTGGTccA.AGGCG......................CGGGCCTGCTA..............AGCCCGTCCCCGTTC.....GGGGgCGTGGGTTCAAATCCCACCCCCGGCGCCA chr.trna11-SerGCT Sc: 76.56

Sup tRNAs

Thr tRNAs

>>>>>>>..>>>>............<<<<.>>>>>.............................................<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCGGTAGCTCAGCCtGGT..G.GAGCGCCTCACTGGTAatggcggtcagccgccta...................G.TGAGGAG...........GtCCCGGGTTCGAATCCCGGCCGGGGCT... chr.trna21-ThrGGT Sc: 88.13 >>>>>>>..>>>>............<<<<.>>>.................................................<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCGGTAGCTCAGCCcGGTc.G.GAGCGCCC...TGGGGctcagccccgcgcaggcctcgtagccgctggcgagacA.GCGGGAG...........GtCCCGGGTTCGAATCCCGGCCGGGGCT... chr.trna6-ThrCGT Sc: 80.40 >>>>>>>..>>>>............<<<<.>>>.................................................<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCGGTAGCTCAGC..GGGccG.GAGCGCCC...TGGGGctcagccccgcgtaggccttgtatccgctggcgagacA.GCGGGAG...........GtCCCGGGTTCGAATCCCGGCCGGGGCT... chr.trna35-ThrTGT Sc: 75.00

Trp tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...>>............<<...>>>>>.......<<<<<<<<<<<<.... GGGGCCGTAGCTCAGCCaGGCAGAGCGGCGGGCTCCAGACCCGTAGGCTGGCGACAGGCGGAGGGCGGGGGTTCAAATCCCTCCGGCCCCACCA chr.trna16-TrpCCA Sc: 83.40

Tyr tRNAs

>>>>>>>..>>>>..........<<<<.>>>>....................................................<<<<................>>>>>.......<<<<<<<<<<<<.... CGGCCCGTAGCTCAGCGGTcgA.GAGCGCCCGGCTGTAGacagcccctggggggacacccacacaaaaccccccaggcctatAACGGGCG...........GtCCCGGGTTCGAATCCCGGCGGGCCGA... chr.trna1-TyrGTA Sc: 59.86

Val tRNAs

>>>>>>>..>>>>........<<<<.>>>................................................................<<<...................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGTCTAGCGGTA.GGATGCCCA...GGGGcggagccccgcagaggcctgacg............................C..GCGGGTG..............AcCCCGGGTTCAAATCCCGGCGGGCCCA... chr.trna18-ValGAC Sc: 84.45 >>>>>>>..>>>..........<<<.>>>>>............................................................<<<<<...................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGTCTAGCGGTA.TGATGCCCGCCTCACGcggctcctcgcctgggaa.................................C..GCGGGTG..............GtCCCGGGTTCAAATCCCGGCGGGCCCACCA chr.trna39-ValCAC Sc: 77.58 >>>>>>>..>>>..........<<<.>>>.>............................................................<.<<<...................>.>>>.......<<<.<<<<<<<<.... GGGCCCGTAGTCTAGCGGCA.TGATGCCCGCCTTACAcggcacacccgcaacagcctaagaacgcgggtggtcccgtcaaccccccgcC..GAGGGGGGTTG..........GgATAGGGTTCGAATCCCGGCGGGCCCACCA chr.trna30-ValTAC Sc: 49.90

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.