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tRNAscan-SE Analysis of Sulfolobus tokodaii

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tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 25 2190961 2191034 View Ala CGC gcgggcccat ctcttagtat 0 0 89.15 76.18 12.97   chr 4 323746 323819 View Ala GGC agtaagttat ctgtggggga 0 0 85.06 72.09 12.97   chr 15 927324 927397 View Ala TGC ctaatttatt ctgtgttagg 0 0 92.26 79.29 12.97     chr 30 1429759 1429685 View Arg CCG catttaatga tcataaacag 0 0 78.80 65.81 12.99   chr 31 1370683 1370585 View Arg CCT attttatagc ctatatattt 1370644 1370621 82.10 71.86 10.24   chr 33 1257721 1257634 View Arg GCG gaatatacat ctattttaca 1257682 1257670 77.26 67.02 10.24   chr 5 328475 328549 View Arg TCG atctatctat ctatttcccg 0 0 89.21 78.97 10.24   chr 27 2270483 2270573 View Arg TCT tagaatctgt ctatactttt 2270522 2270537 82.93 72.69 10.24     chr 28 2241492 2241417 View Asn GTT atatatatgt ttttaacata 0 0 85.05 71.10 13.95     chr 2 280749 280824 View Asp GTC aatattttat ctggcgggca 0 0 78.72 66.14 12.58     chr 42 226355 226268 View Cys GCA ttgaatacat tatttaaaaa 226318 226305 51.36 36.93 14.43     chr 46 168985 168913 View Gln CTG tattattatt ccttacttag 0 0 59.95 37.96 21.99   chr 20 1366019 1366091 View Gln TTG tattattatt cctttttata 0 0 60.51 38.52 21.99     chr 37 371173 371083 View Glu CTC atataataac ctaattttta 0 0 83.22 68.90 14.32   chr 45 191251 191161 View Glu TTC actacgagac ctaattttta 0 0 83.05 68.72 14.33     chr 12 418363 418438 View Gly CCC tatatatgtt ctgtggggga 0 0 84.63 74.42 10.21   chr 21 1719268 1719343 View Gly GCC tatccttagt ctgtgggggg 0 0 85.42 76.54 8.88   chr 26 2204279 2204354 View Gly TCC attatatagt ctttagtgtt 0 0 83.52 71.73 11.79     chr 41 274313 274239 View His GTG aatgggattg ctaatttaac 0 0 82.98 65.52 17.46     chr 16 936179 936268 View Ile GAT tgattaatat tacttgtgaa 936217 936232 80.52 69.65 10.87     chr 19 1304843 1304939 View Leu CAA ataagctaga tctgttcttt 1304882 1304894 59.66 37.60 22.06   chr 10 367158 367258 View Leu CAG aataagagaa tttattaata 367198 367213 58.06 36.93 21.13   chr 35 482657 482554 View Leu GAG aaatgtttgt tcaatttaaa 0 0 53.61 40.86 12.75   chr 14 462371 462454 View Leu TAA tctagggcac cgctgctttt 0 0 68.24 46.18 22.06   chr 36 465388 465288 View Leu TAG tttattttgt tctccttata 465348 465333 57.72 36.58 21.14     chr 1 211719 211819 View Lys CTT tgatttttgt cgtattattt 211757 211783 82.12 72.26 9.86   chr 44 208281 208183 View Lys TTT tcatttttgt cgtattattt 208243 208219 81.40 71.54 9.86     chr 40 280608 280511 View Met CAT gggattgagt tcccgccccc 0 0 79.12 54.27 24.85   chr 7 361020 361112 View Met CAT tttgtttatt tctttattcc 0 0 88.99 76.59 12.40   chr 32 1355777 1355691 View Met CAT ttttattgtc cttacgtaat 1355738 1355727 85.95 73.87 12.08     chr 13 419065 419155 View Phe GAA atattataat cttattacat 419103 419119 76.13 61.93 14.20     chr 24 2190884 2190959 View Pro CGG aaatatttat tgggccggta 0 0 85.34 71.84 13.50   chr 34 914044 913951 View Pro GGG cattactaga ttaccaatag 914004 913987 70.86 56.92 13.94   chr 23 2105122 2105197 View Pro TGG taatattgct tagtttgtga 0 0 84.26 68.67 15.59     chr 9 367006 367116 View Ser CGA ttttatactt cgtaataatt 367044 367069 52.21 30.97 21.24   chr 29 2064049 2063961 View Ser GCT atattagtat ttacaatata 0 0 75.73 57.00 18.73   chr 3 282974 283057 View Ser GGA tgttatactt tactaaatct 0 0 67.20 41.98 25.22   chr 11 416128 416222 View Ser TGA taattaaatt tcgtataata 416166 416176 60.59 38.65 21.94     chr 39 306779 306682 View Thr CGT attataatat ctgtgattac 306741 306718 82.02 70.31 11.71   chr 17 944046 944120 View Thr GGT aatattaaat tgtgggggat 0 0 89.15 73.81 15.34   chr 18 1201508 1201599 View Thr TGT atttttattt tttttctccc 1201547 1201563 83.63 69.92 13.71     chr 22 2088271 2088401 View Trp CCA gatcggtaaa ttattcctaa 2088309 2088365 73.63 60.41 13.22     chr 8 361250 361342 View Tyr GTA tgatggtagt ctttattttt 361288 361306 72.74 54.27 18.47     chr 43 224532 224458 View Val CAC aatatggtat tagtagggcc 0 0 79.18 62.61 16.57   chr 38 362002 361928 View Val GAC atatgataat ttgtgggggt 0 0 83.40 70.19 13.21   chr 6 355127 355201 View Val TAC agttgtacaa tattttatgt 0 0 86.96 73.75 13.21   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.