Genomic tRNA Database: Sulfolobus tokodaii

tRNAscan-SE Analysis of Sulfolobus tokodaii

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>> tRNA Alignments

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>> UCSC Genome Browser

Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTAGCTCAGCCtGGAAGAGTGCTCGGTTGGCATCCGAGAG...........GtCCCGGGTTCAAATCCCGGCCGGTCCA... chr.trna4-AlaGGC Sc: 85.06  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTAGCTCAGCCtGGAAGAGTGCTCGGCTCGCACCCGAGAG...........GtCCCGGGTTCAAATCCCGGCCGGTCCA... chr.trna25-AlaCGC Sc: 89.15  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTAGCTCAGCCtGGAAGAGTGCTCGGCTTGCAACCGAGAG...........GtCCCGGGTTCAAATCCCGGCCGGTCCA... chr.trna15-AlaTGC Sc: 92.26  



Arg tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>...............................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACCCGTAGCTCAGCCaGGAtAGAGCGCCGGCCTGCGGttttaaagtaggg...........AGCCGGCG...........GtCCCGGGTTCAAGTCCCGGCGGGTCCG... chr.trna33-ArgGCG Sc: 77.26  

>>>>>>>..>>>>..........<<<<.>>>>>...............................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTTAGCCaGGAcAAAGCACGGGTCTCCGG........................AACCCGAG...........AtCCCGGGTTCAAATCCCGGCGGGCCCG... chr.trna30-ArgCCG Sc: 78.80  

>>>>>>>..>>>>..........<<<<.>>>>>...............................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACCCGTAGCTCAGCCaGGAtAGAGCGCCGGCCTTCGG........................AGCCGGTG...........GtCCCGGGTTCAAATCCCGGCGGGTCCG... chr.trna5-ArgTCG Sc: 89.21  

>>>>>>>..>>>>..........<<<<.>>>>>...............................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACCCGTAGCTCAGCCaGGAcAGAGCGCCGGCCTCCTAttttggccggtgtataaagaagacAGCCGGTG...........GtCCCGGGTTCAAATCCCGGCGGGTCCG... chr.trna31-ArgCCT Sc: 82.10  

>>>>>>>..>>>>..........<<<<.>>>>>...............................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACCCGTAGCTCAGCCaGGAtAGAGCGCCGGCCTTCTAtgtgaaggccgaagtg........AGCCGGTG...........GtCCCGGGTTCAAATCCCGGCGGGTCCG... chr.trna27-ArgTCT Sc: 82.93  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCGGTAGCTCAGCTGGCAGAGCGCCGGGCTGTTAACCCGGTG...........GtCGCAGGTTCGAGTCCTGCCCGCGGCGCCA chr.trna28-AsnGTT Sc: 85.05  



Asp tRNAs



>>>>>>>..>>>>............<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCCGCGGTAGTCTAGCCcGGTtctAGGATGGGGGCCTGTCGAGCCCTTG...........ACCCGGGTTCAAATCCCGGCCGCGGCG... chr.trna2-AspGTC Sc: 78.72  



Cys tRNAs



>>>>>>>..>>>...........<<<.>>>>>.....................<<<<<.................>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGGCCGAGAGGTtA.AGGCGGCGGGCCGCAGagtttattgcagatACCCGTTA...........TttCGCGGGTTCAAGTCCCGCCCCCGGCT... chr.trna42-CysGCA Sc: 51.36  



Gln tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
AGCCGGGTCGTCTAGTGGTcaA.GGATCGAGGGCTCTGGCCCCTCGG...........ACCTGGGTTCAAATCCCAGCCCGGCTA... chr.trna46-GlnCTG Sc: 59.95  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
AGCCGGGTCGTCTAGTGGTcaA.GGATCGAGGGCTTTGGCCCCTCGG...........ACCTGGGTTCAAATCCCAGCCCGGCTA... chr.trna20-GlnTTG Sc: 60.51  



Glu tRNAs


>>>>>>>..>>>>............................<<<<.................>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCCGCGGTAGTATAGCCcGGTc.AagctcgatacgccgaaaGTATG................CGGGCCTCTCAAGCCCGTG...........GCCCGGGTTCAAATCCCGGCCGCGGCA... chr.trna37-GluCTC Sc: 83.22  

>>>>>>>..>>.>............................<.<<.................>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCCGCGGTAGTATAGCCcGGTcaA.................GCACGctgcgccgaaagtatgCGGGCCTTTCGAGCCCGTG...........ACCCGGGTTCAAATCCCGGCCGCGGCA... chr.trna45-GluTTC Sc: 83.05  



Gly tRNAs



>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGCCGTAGTCTAGCCtGGAttAGGACGCCGGCCTGCCACGCCGGAG...........GtCCCGGGTTCAAATCCCGGCGGTCGCA... chr.trna21-GlyGCC Sc: 85.42  

>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGCCGTCGTCTAGTCtGGAttAGGACGCCGGCCTCCCAAGCCGGTA...........AtCCCGGGTTCAAATCCCGGCGGCCGCA... chr.trna12-GlyCCC Sc: 84.63  

>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGCCGTCGTCTAGTCtGGAttAGGACGCTGGCCTTCCAAGCCAGTA...........AtCCCGGGTTCAAATCCCGGCGGCCGCA... chr.trna26-GlyTCC Sc: 83.52  



His tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTCGGGTAGCTCAGCCtGGTtAGAGCGACGGGCTGTGGACCCGTAG...........GtCCCGGGTTCAAGTCCCGGCCCGAGCC... chr.trna41-HisGTG Sc: 82.98  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTTAGCTtGGTAGAGCGCCCGGCTGATAacactcccggtcagacACCGGGAG...........GtCGCGGGTTCAAGTCCCGCCGGGCCCA... chr.trna16-IleGAT Sc: 80.52  




Leu tRNAs



>>>>>>>..>>>.............<<<.>>>>............................<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCAaGGTcaAAGGGGGCGGTCCCTTAaagggggcctaaactgaggCTCCGCTGGCGAAG....GCCTgCGTGGGTTCAAGTCCCAC.CCCCCGCA... chr.trna35-LeuGAG Sc: 53.61  

>>>>>>>..>>>.............<<<.>>>>>..........................<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCAaGGTcaAAGGGGTCGGGCTCAGGacaagatatgtgggat...CCCCGATGGCATAG....GCCTgCGTGGGTTCAAGTCCCAC.CCCCCGCA... chr.trna10-LeuCAG Sc: 58.06  

>>>>>>>..>>>.............<<<.>>>>>..........................<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCAaGGTcaAAGGGGTCGGGCTTAGGaccttaatggtaagat...CCCCGATGGCATAG....GCCTgCGTGGGTTCAAGTCCCAC.CCCCCGCA... chr.trna36-LeuTAG Sc: 57.72  

>>>>>>>..>>>.............<<<.>>>>>..........................<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCT.GGTcaAAGGGGGCGGACTCAAGacccaagggggat......ATCCGCTGGCGTAG....GCCTgCGTGGGTTCGAAGCCCAC.CCCCCGCA... chr.trna19-LeuCAA Sc: 59.66  

>>>>>>>..>>>.............<<<.>>>>>..........................<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCT.GGTcaAAGGGGGCGGACTTAAG...................ATCCGCTGGCGAAG....GCCTgCGTGGGTTCAAGTCCCAC.CCCCCGCA... chr.trna14-LeuTAA Sc: 68.24  



Lys tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>..................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCaGGTAGAGCGGCGGGCTCTTAacgtaatatatacagggtagaggagatACCCGTAG...........GtCCCGGGTTCAAATCCCGGCGGGCCCG... chr.trna1-LysCTT Sc: 82.12  

>>>>>>>..>>>>.........<<<<.>>>>>..................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCaGGTAGAGCGGCGGGCTTTTAaccgcgtaacgggttgcgggaagca..ACCCGTAG...........GtCCCGGGTTCAAATCCCGGCGGGCCCG... chr.trna44-LysTTT Sc: 81.40  



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>...............................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTTAGCCcGGT.AGAGCGCCCGGCTCATAaagatccttctcttgagag.....ACCGGGTG...........GtCCGGGGTTCAAGTCCCCGCGGGCCCA... chr.trna7-MetCAT Sc: 88.99  
GCCGCCGTAGCTCAGCCtGGTtAGAGCGCCGGACTCATAcggtaaggggac............ATCCGGTT...........GtCCGGGGTTCAAATCCCCGCGGCGGCA... chr.trna32-MetCAT Sc: 85.95  
AGCGGCGTAGGGCAGCCtGGT.AGCCCGCGGGGCTCATAagtggggtaagttcccacggtgagACCCCGAG...........GtCCCTGGTTCAAGTCCAGGCGCCGCTA... chr.trna40-MetCAT Sc: 79.12  



Phe tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>........................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCCGTAGCTCAGCCcGGGAGAGCGCCCGGCTGAAGagtagatgcacgcagtgACCGGGTT...........GtCCGGGGTTCAAGTCCCCGCGGCGGCA... chr.trna13-PheGAA Sc: 76.13  



Pro tRNAs



>>>>>>>..>>>>...........<<<<.>>>>>.........................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGACCGTCGTCTAGCCtGGActAGGATGCAGGCCTGGGGataaatccctaaccagtaCGCCTGTG...........GtCCCGGGTTCAAATCCCGGCGGTCCCA... chr.trna34-ProGGG Sc: 70.86  

>>>>>>>..>>>>...........<<<<.>>>>>.........................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTGGTCTAGCCtGGActAGGACGCAGCGCTCGGG..................CCGCTGTG...........GtCCCGGGTTCAAATCCCGGCGGGCCCA... chr.trna24-ProCGG Sc: 85.34  

>>>>>>>..>>>>...........<<<<.>>>>>.........................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCGTAGTCTAGCCtGGActAGGACGCAAGGCTTGGG..................CCCTTGTG...........GtCGCGGGTTCAAATCCCGCCGGCCCCA... chr.trna23-ProTGG Sc: 84.26  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>..............<<<.>>>>>.................................<<<<<..>>>................<<<..>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGCCCGAGC..GGTctA.AGGGGGCGGCCTGGAG..........................AGCCGTTGGGG...GTTTc........CCCGCGCGGGTTCAAGTCCCGCCCCCGGCG... chr.trna3-SerGGA Sc: 67.20  

>>>>>>>..>>>..............<<<.>>>>>.................................<<<<<...>>>>>.........<<<.<<...>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGCCCGAGC..GGActA.AGGGGGTAGGCTCGAGactttccagcgttaagatggcgtgcgACCTACTGCCCCTA.........TGG.GGCACGCGGGTTCAAATCCCGCCCCCGGCG... chr.trna9-SerCGA Sc: 52.21  

>>>>>>>..>>>..............<<<.>>>>>.................................<<<<<..>>>>.............<.<<<..>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGCCCGAGT..GGActA.AGGGGCTGGCCTTGAGagcttcaggtt...............AGCCAGTGGGGAT...........CTcCCCGCGCGGGTTCAAATCCCGCCCCCGGCG... chr.trna11-SerTGA Sc: 60.59  


>>>>>>>..>>>>............<<<<.>>>>>.................................<<<<<..>>>..>.........<...<<<..>>>>>.......<<<<<<<<<<<<....
GCCGGGGTCGCCTAGCCcGGTt.A.GGGCGGCGGCCTGCTA..........................AGCCGCTGGGGTCC.........GTC.CCCGCGCGGGTTCAAATCCCGCCCCCGGCGCCA chr.trna29-SerGCT Sc: 75.73  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>...............................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCGGTAGCTCAGCCtGGCtAGAGCGTTGCCCTGGTA........................AGGCAAAG...........GtCCCGGGTTCAAATCCCGGCCGCGGCT... chr.trna17-ThrGGT Sc: 89.15  

>>>>>>>..>>>>..........<<<<.>>>>>...............................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCCGTAGCTCAGTCtGGT.AGAGCGCCGGCCTCGTAaggttcctaagaaggatccaagaaAGCCGGTG...........GtCCGGGGTTCAAGTCCCCGCGGCGGCT... chr.trna39-ThrCGT Sc: 82.02  

>>>>>>>..>>>>..........<<<<.>>>>>...............................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCTGTAGCTCAGCCtGGTtAGAGCGCCGGCCTTGTAagggtaaaggacaggac.......AGCCGGCG...........GtCCGGGGTTCAAATCCCCGCAGCGGCT... chr.trna18-ThrTGT Sc: 83.63  



Trp tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>................................................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCATAGCTCAGCTaGGTAGAGTGCCGGGCTCCAGctttcatcgggtcttacgaccctatataaggggatgagttaaagctggagaggagagACCCGGTG...........GtCCGGGGTTCAAGTCCCCGTGGGCCCA... chr.trna22-TrpCCA Sc: 73.63  



Tyr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>..........................<<<<<................>>>>>.......<<<<<<<<<<<<....
CCCGCCGTAGCTCAGCCcGGTGGAGCGCCCGGCTGTAGggaaggagggcacgcggtgACCGGGTG...........GtCCGGGGTTCAAGTCCCCGCGGCGGGA... chr.trna8-TyrGTA Sc: 72.74  



Val tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTCGTCTAGCCtGGTtAGGACGCCGCCCTGACGCGGCGGAG...........GtCCTGGGTTCAAGTCCCAGCGGGCCCA... chr.trna38-ValGAC Sc: 83.40  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTCGTCTAGTCtGGTtAGGACGCCACCCTCACACGGTGGAG...........AtCCGGGGTTCAAGTCCCCGCGGGCCCA... chr.trna43-ValCAC Sc: 79.18  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTCGTCTAGCCtGGTtAGGACGCCGCCCTTACAAGGCGGAG...........GtCCTGGGTTCAAGTCCCAGCGGGCCCA... chr.trna6-ValTAC Sc: 86.96

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.