Genomic tRNA Database: Sulfolobus solfataricus

tRNAscan-SE Analysis of Sulfolobus solfataricus

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>> Genome Seq

Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr.trna19 (1-74)	Length: 74 bp
Type: Ala	Anticodon: CGC at 35-37 (35-37)	Score: 87.31
Seq: GGGCCGGTAGCTCAGCCtGGAAGAGTGCTCGGTTCGCACCCGAGAGGtCCCGGGTTCAAATCCCGGCCGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna7 (1-74)	Length: 74 bp
Type: Ala	Anticodon: GGC at 35-37 (35-37)	Score: 85.06
Seq: GGGCCGGTAGCTCAGCCtGGAAGAGTGCTCGGTTGGCATCCGAGAGGtCCCGGGTTCAAATCCCGGCCGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna4 (1-74)	Length: 74 bp
Type: Ala	Anticodon: TGC at 35-37 (35-37)	Score: 87.87
Seq: GGGCCGGTAGCTCAGCCtGGAAGAGTGCTCGGTTTGCACCCGAGAGGtCCCGGGTTCAAATCCCGGCCGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna5 (1-75)	Length: 75 bp
Type: Arg	Anticodon: CCG at 36-38 (36-38)	Score: 79.29
Seq: GGACCCGTAGCTCAGCCaGGAtGGAGCGCCGGCCTCCGGAGCCAGAGGtCCCGGGTTCAAATCCCGGCGGGTCCG
Str: >>>>>>>..>>>>..........<<<<.>.>>>.......<<<.<.....>>>>>.......<<<<<<<<<<<<.

chr.trna34 (1-88)	Length: 88 bp
Type: Arg	Anticodon: CCT at 36-38 (36-38)	Score: 76.78
Possible intron: 40-52 (40-52)
Seq: GGACCCGTAGCTCAGCCaGGAtGGAGCGCCGGCCTCCTAactttcggaagaaAGCCGGTGGtCGCGGGTTCGAATCCCGCCGGGTCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>....................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna31 (1-75)	Length: 75 bp
Type: Arg	Anticodon: GCG at 36-38 (36-38)	Score: 81.90
Seq: GGACCCGTAGCTCAGCCaGGAcGGAGCGCCGGCCTGCGGAGCCGGAGGtCCCGGGTTCAAGTCCCGGCGGGTCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna25 (1-75)	Length: 75 bp
Type: Arg	Anticodon: TCG at 36-38 (36-38)	Score: 83.35
Seq: GGACCCGTAGCTCAGCTaGGAtGGAGCGCCGGCCTTCGGAGCCGGTGGtCCCGGGTTCAAATCCCGGCGGGTCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna35 (1-90)	Length: 90 bp
Type: Arg	Anticodon: TCT at 36-38 (36-38)	Score: 78.22
Possible intron: 40-54 (40-54)
Seq: GGACCCGTAGCTCAGCCaGGAcGGAGCGCCGGCCTTCTAgcgtctaaggaggatAGCCGGCGGtCCCGGGTTCAAATCCCGGCGGGTCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>......................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna2 (1-87)	Length: 87 bp
Type: Asn	Anticodon: GTT at 34-36 (34-36)	Score: 66.43
Possible intron: 38-51 (38-51)
Seq: GCCGGAGTAGCTCAGTTGGCAGAGCGCCCGGCTGTTAtgccgggtgcagaaACCGGGTGGtCGGAGGTTCGAGTCCTCCCTCCGGCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.....................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna40 (1-73)	Length: 73 bp
Type: Asp	Anticodon: GTC at 35-37 (35-37)	Score: 78.66
Seq: GCCGCGGTAGTCTAGTGGTctAGGATGGGGGCCTGTCGAGCCCCTGACCCGGGTTCAAATCCCGGCCGCGGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna42 (1-89)	Length: 89 bp
Type: Cys	Anticodon: GCA at 35-37 (35-37)	Score: 55.39
Possible intron: 39-52 (39-52)
Seq: GCCGGGGTGGCCGAGTGGTctAAGGCGGCGGGCCGCAGtggtactagttgacACCCGTTATttCGCGGGTTCGAATCCCGCCCCCGGCT
Str: >>>>>>>..>>>...........<<<.>>>>>.....................<<<<<......>>>>>.......<<<<<<<<<<<<.
BHB: GCCGGGGTGGCCGAGTGGTCTAAGGCGGC[ACTACCAGCCCATCGGTAGCGCTAG]GGGCCGCAGTGGTACTAGTTGACACCCGTTATTTCGCGGGTTCGAATCCCGCCCCCGGCT

chr.trna17 (1-73)	Length: 73 bp
Type: Gln	Anticodon: CTG at 35-37 (35-37)	Score: 64.29
Seq: AGCCGGGTAGTCTAGTGGTcaAGGATCCAGGGCTCTGGCCCCTGGGACCAGGGTTCGAATCCCTGCCCGGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna9 (1-73)	Length: 73 bp
Type: Gln	Anticodon: TTG at 35-37 (35-37)	Score: 64.85
Seq: AGCCGGGTAGTCTAGTGGTcaAGGATCCAGGGCTTTGGCCCCTGGGACCAGGGTTCGAATCCCTGCCCGGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna26 (1-75)	Length: 75 bp
Type: Glu	Anticodon: CTC at 37-39 (37-39)	Score: 86.85
Seq: GCCGCGGTGGTTTAGCCcGGTcaAGAATGCGGGCCTCTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGCGGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
BHB: GCCGCGGTGGTTTAGCCCGGTCA[AGCGCAGGCACCGAA]AGAATGCGGGCCTCTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGCGGCA

chr.trna32 (1-75)	Length: 75 bp
Type: Glu	Anticodon: TTC at 37-39 (37-39)	Score: 87.41
Seq: GCCGCGGTGGTTTAGCCcGGTcaAGAATGCGGGCCTTTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGCGGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
BHB: GCCGCGGTGGTTTAGCCCGGTCA[AGCGCAGGCACCGAA]AGAATGCGGGCCTTTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGCGGCA

chr.trna30 (1-76)	Length: 76 bp
Type: Gly	Anticodon: CCC at 37-39 (37-39)	Score: 86.93
Seq: GCGGCCGTAGTCTAGGCtGGAttAGGACGCCGGCCTCCCAAGCCGGTGAtCCCGGGTTCAAATCCCGGCGGCCGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna10 (1-76)	Length: 76 bp
Type: Gly	Anticodon: GCC at 37-39 (37-39)	Score: 87.05
Seq: GCGGCCGTAGTCTAGCCtGGAttAGGACGCCTGCCTGCCACGCAGGAGGtCCCGGGTTCAAATCCCGGCGGCCGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna8 (1-76)	Length: 76 bp
Type: Gly	Anticodon: TCC at 37-39 (37-39)	Score: 87.49
Seq: GCGGCCGTAGTCTAGGCtGGAttAGGACGCCGGCCTTCCAAGCCGGTGAtCCCGGGTTCAAATCCCGGCGGCCGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna41 (1-74)	Length: 74 bp
Type: His	Anticodon: GTG at 35-37 (35-37)	Score: 84.72
Seq: GCTCGGGTAGCTCAGCCtGGAAGAGCGCCGGGCTGTGGACCCGGAAGtCCCGGGTTCAAATCCCGGCCCGAGCC
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna22 (1-86)	Length: 86 bp
Type: Ile	Anticodon: GAT at 35-37 (35-37)	Score: 79.85
Possible intron: 39-50 (39-50)
Seq: GGGCCCGTAGCTTAGCTtGGTGGAGCGCCCGGCTGATAgggtgctcagaaACCGGGAGGtCACGGGTTCAAATCCCGTCGGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>...................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna18 (1-100)	Length: 100 bp
Type: Leu	Anticodon: CAA at 36-38 (36-38)	Score: 64.53
Possible intron: 40-55 (40-55)
Seq: GCGGGGGTGCCCGAGCTGGTcaAAGGGGGCGGACTCAAGaccccttaagtgagagATCCGCTGGCGAAGGCCTtCGCGGGTTCAAATCCCGTCCCCCGCA
Str: >>>>>>>..>>>............<<<.>>>>>.......................<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna13 (1-85)	Length: 85 bp
Type: Leu	Anticodon: CAG at 37-39 (37-39)	Score: 64.19
Seq: GCGGGGGTGCCCGAGCTaGGTcgAAGGGGGTAGGCTCAGGCCCTACTGGTGAAGGCCTtCGCGGGTTCAAATCCCGCCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna21 (1-85)	Length: 85 bp
Type: Leu	Anticodon: GAG at 37-39 (37-39)	Score: 67.68
Seq: GCGGGGGTGCCCGAGCTaGGGcaAAGGGGGCGGACTGAGGCTCCGCTGGCGAAGGCCTgCACGGGTTCAAATCCCGTCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna12 (1-100)	Length: 100 bp
Type: Leu	Anticodon: TAA at 37-39 (37-39)	Score: 66.73
Possible intron: 41-55 (41-55)
Seq: GCGGGGGTGCCCGAGCCtGGTcaAAGGGGGCGGACTTAAGacccccaagtaagagATCCGCTGGCGAAGGCCTgCACGGGTTCAAATCCCGTCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>......................<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna16 (1-85)	Length: 85 bp
Type: Leu	Anticodon: TAG at 37-39 (37-39)	Score: 66.71
Seq: GCGGGGGTGCCCGAGCTaGGTcaAAGGGGGCAGGCTTAGGCCCTGCTGGCGAAGGCCTgCACGGGTTCAAATCCCGTCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna43 (1-95)	Length: 95 bp
Type: Lys	Anticodon: CTT at 35-37 (35-37)	Score: 79.03
Possible intron: 39-60 (39-60)
Seq: GGGCCCGTAGCTTAGCCaGGTAGAGCGACGGGCTCTTAaccatgtaagaaaagcggagatACCCGTAGtCCCGGGTTCGAATCCCGGCGGGCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.............................<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna44 (1-74)	Length: 74 bp
Type: Lys	Anticodon: TTT at 35-37 (35-37)	Score: 89.68
Seq: GGGCCCGTAGCTCAGCCaGGTAGAGCGGCGGGCTTTTAACCCGTAGGtCCCGGGTTCGAATCCCGGCGGGCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GGGCCCGTAGCTCAGCCAGGTAGAGCGGCGGGCTTTTA[ACCGCAAAGGGTTGCGGAAAGCA]ACCCGTAGGTCCCGGGTTCGAATCCCGGCGGGCCCG

chr.trna14 (1-74)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (35-37)	Score: 86.71
Seq: GGGCCCGTAGCTTAGCTcGGTAGAGCGCTCGGCTCATAACCGAGTGGtCAGGGGTTCAAATCCCCTCGGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna39 (1-103)	Length: 103 bp
Type: Met	Anticodon: CAT at 36-38 (36-38)	Score: 73.42
Possible intron: 40-64 (40-64)
Seq: AGCGGGGTGGGCTAGCCtGGTaAGGCCGCGGGGCTCATAtactctttaaagcacgcgttgggaaACCCCGAGGtCCCTGGTTCAAATCCAGGCCCCGCTACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>................................<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna11 (1-92)	Length: 92 bp
Type: Met	Anticodon: CAT at 36-38 (36-38)	Score: 84.56
Possible intron: 40-56 (40-56)
Seq: GCCGCCGTAGCTCAGCCtGGTtAGAGCGCCGGACTCATAcgcgtaatatccgggaaATCCGGTTGtCCGGGGTTCAAATCCCCGCGGCGGCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>........................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna29 (1-74)	Length: 74 bp
Type: Phe	Anticodon: GAA at 35-37 (35-37)	Score: 84.13
Seq: GCCGCCGTAGCTCAGCCcGGGAGAGCGCCCGGCTGAAGACCGGGTTGtCCGGGGTTCAAGTCCCCGCGGCGGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna6 (1-76)	Length: 76 bp
Type: Pro	Anticodon: CGG at 37-39 (37-39)	Score: 73.26
Seq: GGGTCCGTGGTCTAGCCtGGActAGGATGCGACGTTCGGGTCGTCGTGGtCCCGGGTTCAAATCCCGGCGGACCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna23 (1-76)	Length: 76 bp
Type: Pro	Anticodon: GGG at 37-39 (37-39)	Score: 83.21
Seq: GGGGCCGTAGTCTAGCTtGGActAGGATGCCAGCCTGGGGCGCTGGTGGtCCCGGGTTCAAATCCCGGCGGCCCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GGGGCCGTAGTCTAGCTTGGACTAGGATGCCAGCCTGGGG[ATACTACCCTAACCACCAGAA]CGCTGGTGGTCCCGGGTTCAAATCCCGGCGGCCCCA

chr.trna1 (1-76)	Length: 76 bp
Type: Pro	Anticodon: TGG at 37-39 (37-39)	Score: 85.70
Seq: GGGGCCGTAGTCTAGCCtGGActAGGACGCCAGGCTTGGGCCCTGGTGAtCGCGGGTTCAAATCCCGCCGGCCCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna28 (1-108)	Length: 108 bp
Type: Ser	Anticodon: CGA at 34-36 (34-36)	Score: 50.78
Possible intron: 38-61 (38-61)
Seq: GCCGGGGTGCCCGAGCGGTcAAGGGGGTAGGCTCGAGacctttccagcgttactgcgagggACCTACTGCCTCTCTGAGGCACACGGGTTCGAATCCCGTCCCCGGCG
Str: >>>>>>>..>>>..........<<<.>>>>>...............................<<<<<.>>>>>...<<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna46 (1-85)	Length: 85 bp
Type: Ser	Anticodon: GCT at 35-37 (35-37)	Score: 72.61
Seq: GCCGAGGTCGCCTAGCCaGGTAGGGCGGCGGCCTGCTAAGCCGCTGGGGATCCTCCCCACGCGGGTTCAAATCCCGCCCTCGGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>......<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna38 (1-84)	Length: 84 bp
Type: Ser	Anticodon: GGA at 35-37 (35-37)	Score: 72.11
Seq: GCCGGGGTGCCCGAGCGGActAAGGGGCTGGCCTGGAGAGCCAGTGGGGGTTTcCCCGCGCGGGTTCAAATCCCGCCCCCGGCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.....<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna33 (1-85)	Length: 85 bp
Type: Ser	Anticodon: TGA at 35-37 (35-37)	Score: 71.96
Seq: GCCGGGGTGCCCGAGTGGTccAAGGGGCTGGCCTTGAGAGCCAGTAGGTGTCTaGCCTgCGCGGGTTCAAATCCCGCCCCCGGCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna37 (1-88)	Length: 88 bp
Type: Thr	Anticodon: CGT at 36-38 (36-38)	Score: 85.82
Possible intron: 40-52 (40-52)
Seq: GCCGCCGTAGCTCAGCCtGGTtAGAGCGCCGGCCTCGTAcccaaagtgagatAGCCGGCGGtCGCGGGTTCGAATCCCGCCGGCGGCT
Str: >>>>>>>..>>>>..........<<<<.>>>>>....................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna20 (1-75)	Length: 75 bp
Type: Thr	Anticodon: GGT at 36-38 (36-38)	Score: 92.48
Seq: GCCGCGGTAGCTCAGCCtGGCcAGAGCGCTGCCCTGGTAAGGCAGAGGtCCCGGGTTCAAATCCCGGCCGCGGCT
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna24 (1-90)	Length: 90 bp
Type: Thr	Anticodon: TGT at 36-38 (36-38)	Score: 85.95
Possible intron: 40-54 (40-54)
Seq: GCCGCCGTAGCTCAGCCtGGTtAGAGCGCCGGCCTTGTAagttactgcctagatAGCCGGCGGtCGCGGGTTCGAATCCCGCCGGCGGCT
Str: >>>>>>>..>>>>..........<<<<.>>>>>......................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna45 (1-139)	Length: 139 bp
Type: Trp	Anticodon: CCA at 35-37 (35-37)	Score: 73.70
Possible intron: 39-103 (39-103)
Seq: GGGCCCGTAGCTTAGCCaGGTAGAGTACTGGGCTCCAGatattaatgctagacattgggtcttaagaccctttatggggatgaagtgtatctggagaggagagACCCAGTGGtCGCGGGTTCGAGTCCCGCCGGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>........................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna27 (1-89)	Length: 89 bp
Type: Tyr	Anticodon: GTA at 37-39 (37-39)	Score: 75.08
Possible intron: 41-53 (41-53)
Seq: CCCGCCGTAGCTCAGCCcGGTttAGAGCGCCCGGCTGTAGataggggacagtaACCGGGTGGtCCGGGGTTCAAGTCCCCGCGGCGGGA
Str: >>>>>>>..>>>>...........<<<<.>>>>>....................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna3 (1-75)	Length: 75 bp
Type: Val	Anticodon: CAC at 36-38 (36-38)	Score: 79.41
Seq: GGGCCCGTCGTCTAGCTtGGTtAGGACGTCGCCCTCACACGGCGAAGAtCCTGGGTTCAAGTCCCAGCGGGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna36 (1-75)	Length: 75 bp
Type: Val	Anticodon: GAC at 36-38 (36-38)	Score: 84.21
Seq: GGGCCCGTCGTCTAGCCtGGTtAGGACGTCGCCCTGACACGGCGGAGGtCCTGGGTTCAAATCCCAGCGGGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna15 (1-75)	Length: 75 bp
Type: Val	Anticodon: TAC at 36-38 (36-38)	Score: 88.14
Seq: GGGCCCGTCGTCTAGCCtGGTtAGGACGCTGCCCTTACGAGGCAGAGGtCCTGGGTTCAAATCCCAGCGGGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.