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tRNAscan-SE Analysis of Sulfolobus solfataricus

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tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 19 915708 915781 View Ala CGC tttaattagt ttattatgat 0 0 87.31 74.34 12.97   chr 7 333447 333520 View Ala GGC cttaaccagt ctgtggggga 0 0 85.06 72.09 12.97   chr 4 222725 222798 View Ala TGC tttattcgag ctttctatag 0 0 87.87 74.90 12.97     chr 5 246930 247004 View Arg CCG tatttatgtt ttgtggggtt 0 0 79.29 72.47 6.82   chr 34 290978 290891 View Arg CCT tctaataatt cacattctca 290939 290927 76.78 66.44 10.34   chr 31 485882 485808 View Arg GCG agtattttga ttgtggggtt 0 0 81.90 71.66 10.24   chr 25 733011 732937 View Arg TCG tatcataagg ttgtggggga 0 0 83.35 73.12 10.23   chr 35 249085 248996 View Arg TCT attttatgtt cacatattat 249046 249032 78.22 67.99 10.23     chr 2 49344 49430 View Asn GTT tttttatcac ctattctaga 49381 49394 66.43 44.03 22.40     chr 40 184684 184612 View Asp GTC acgtaaagtt tatttaaatt 0 0 78.66 63.27 15.39     chr 42 142570 142457 View Cys GCA tattattgtt tttagaagag 78 91 55.39 40.95 14.44     chr 17 789937 790009 View Gln CTG atttaaatac cctagctagt 0 0 64.29 44.83 19.46   chr 9 386883 386955 View Gln TTG gtatagaatt cctctcggct 0 0 64.85 45.39 19.46     chr 26 648313 648224 View Glu CTC tagcgaaaac ctaattttat 0 0 86.85 74.75 12.10   chr 32 453321 453232 View Glu TTC atgaggactt ctttgggatt 0 0 87.41 75.31 12.10     chr 30 590292 590217 View Gly CCC tagtgaaact tacatcttct 0 0 86.93 76.72 10.21   chr 10 387197 387272 View Gly GCC attaaacagt tacaatactt 0 0 87.05 74.94 12.11   chr 8 338925 339000 View Gly TCC attatagagt tacataatgt 0 0 87.49 77.28 10.21     chr 41 179553 179480 View His GTG atagcggctg cttcttttga 0 0 84.72 69.97 14.75     chr 22 913775 913690 View Ile GAT tagattaaga ttactcatgt 913737 913726 79.85 67.34 12.51     chr 18 837019 837118 View Leu CAA tttaaaatgt tccatttctt 837058 837073 64.53 44.95 19.58   chr 13 639035 639119 View Leu CAG ttatttaagt gtgataaaat 0 0 64.19 39.33 24.86   chr 21 2135500 2135416 View Leu GAG gtattgatat tatacccttt 0 0 67.68 45.61 22.07   chr 12 637164 637263 View Leu TAA ataatagatt tgatagttct 637204 637218 66.73 44.66 22.07   chr 16 664870 664954 View Leu TAG tttataatgc ctgtttttaa 0 0 66.71 41.21 25.50     chr 43 138445 138351 View Lys CTT ttttattgtt cgcatcaaat 138407 138386 79.03 66.93 12.10   chr 44 122655 122559 View Lys TTT acttacgttt cgcactattt 0 0 89.68 79.81 9.87     chr 14 640497 640570 View Met CAT ttgtatatgt tgaaattttt 0 0 86.71 71.00 15.71   chr 39 184880 184778 View Met CAT ggggtaaagt tattatttct 184841 184817 73.42 50.42 23.00   chr 11 466224 466315 View Met CAT tcttataaga ccttaactaa 466263 466279 84.56 72.47 12.09     chr 29 595458 595385 View Phe GAA ttattattat ctgtggggta 0 0 84.13 69.94 14.19     chr 6 331724 331799 View Pro CGG taaataatag tacataaatt 0 0 73.26 53.41 19.85   chr 23 898373 898277 View Pro GGG ctttattaaa ttgtgggggg 0 0 83.21 69.64 13.57   chr 1 48739 48814 View Pro TGG attatagaag cttacggggc 0 0 85.70 71.58 14.12     chr 28 641038 640931 View Ser CGA atatttaatt tatatcaatt 641001 640978 50.78 26.64 24.14   chr 46 49832 49748 View Ser GCT ttaaagtagt catataaatc 0 0 72.61 50.44 22.17   chr 38 185227 185144 View Ser GGA atagtagagt ctatttaaat 0 0 72.11 45.44 26.67   chr 33 341916 341832 View Ser TGA actataattt ctaagcgttt 0 0 71.96 48.87 23.09     chr 37 206424 206337 View Thr CGT gtaaaatgat tggaatctaa 206385 206373 85.82 75.64 10.18   chr 20 2538937 2539011 View Thr GGT tgtttatgat cttgttacta 0 0 92.48 79.08 13.40   chr 24 789766 789677 View Thr TGT ttttcttaat tcttctaaat 789727 789713 85.95 75.77 10.18     chr 45 72869 72731 View Trp CCA attaagtaat tacatctaaa 72831 72767 73.70 63.27 10.43     chr 27 642552 642464 View Tyr GTA tctaattaga cttctttacc 642512 642500 75.08 56.62 18.46     chr 3 114659 114733 View Val CAC gctagtaaaa tgtgggggat 0 0 79.41 64.27 15.14   chr 36 227569 227495 View Val GAC ctagtattaa tgttgtgggg 0 0 84.21 72.00 12.21   chr 15 646823 646897 View Val TAC aataactagt ttgtggggga 0 0 88.14 73.36 14.78   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.