Genomic tRNA Database: Sulfolobus solfataricus

tRNAscan-SE Analysis of Sulfolobus solfataricus

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>> Secondary Structures

>> tRNA Alignments

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>> UCSC Genome Browser

Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTAGCTCAGCCtGGAAGAGTGCTCGGTTGGCATCCGAGAG...........GtCCCGGGTTCAAATCCCGGCCGGTCCA... chr.trna7-AlaGGC Sc: 85.06  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTAGCTCAGCCtGGAAGAGTGCTCGGTTCGCACCCGAGAG...........GtCCCGGGTTCAAATCCCGGCCGGTCCA... chr.trna19-AlaCGC Sc: 87.31  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTAGCTCAGCCtGGAAGAGTGCTCGGTTTGCACCCGAGAG...........GtCCCGGGTTCAAATCCCGGCCGGTCCA... chr.trna4-AlaTGC Sc: 87.87  



Arg tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>......................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACCCGTAGCTCAGCCaGGAcGGAGCGCCGGCCTGCGG...............AGCCGGAG...........GtCCCGGGTTCAAGTCCCGGCGGGTCCG... chr.trna31-ArgGCG Sc: 81.90  

>>>>>>>..>>>>..........<<<<.>.>>>......................<<<.<................>>>>>.......<<<<<<<<<<<<....
GGACCCGTAGCTCAGCCaGGAtGGAGCGCCGGCCTCCGG...............AGCCAGAG...........GtCCCGGGTTCAAATCCCGGCGGGTCCG... chr.trna5-ArgCCG Sc: 79.29  

>>>>>>>..>>>>..........<<<<.>>>>>......................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACCCGTAGCTCAGCTaGGAtGGAGCGCCGGCCTTCGG...............AGCCGGTG...........GtCCCGGGTTCAAATCCCGGCGGGTCCG... chr.trna25-ArgTCG Sc: 83.35  

>>>>>>>..>>>>..........<<<<.>>>>>......................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACCCGTAGCTCAGCCaGGAtGGAGCGCCGGCCTCCTAactttcggaagaa..AGCCGGTG...........GtCGCGGGTTCGAATCCCGCCGGGTCCG... chr.trna34-ArgCCT Sc: 76.78  

>>>>>>>..>>>>..........<<<<.>>>>>......................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACCCGTAGCTCAGCCaGGAcGGAGCGCCGGCCTTCTAgcgtctaaggaggatAGCCGGCG...........GtCCCGGGTTCAAATCCCGGCGGGTCCG... chr.trna35-ArgTCT Sc: 78.22  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.....................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGGAGTAGCTCAGTTGGCAGAGCGCCCGGCTGTTAtgccgggtgcagaaACCGGGTG...........GtCGGAGGTTCGAGTCCTCCCTCCGGCG... chr.trna2-AsnGTT Sc: 66.43  



Asp tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCCGCGGTAGTCTAGTGGTctA.GGATGGGGGCCTGTCGAGCCCCTG...........ACCCGGGTTCAAATCCCGGCCGCGGCG... chr.trna40-AspGTC Sc: 78.66  



Cys tRNAs



>>>>>>>..>>>............<<<.>..................................................<..................>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGGCCGAGTGGTctA.AGGCGGCACTACCAgcccatcggtagcgctaggggccgcagtggtactagttgACACC.CGTTAT.......TtCGCGGGTTCGAATCCCGCCCCCGGCT... chr.trna42-CysGCA Sc: 55.39  



Gln tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
AGCCGGGTAGTCTAGTGGTcaA.GGATCCAGGGCTCTGGCCCCTGGG...........ACCAGGGTTCGAATCCCTGCCCGGCTA... chr.trna17-GlnCTG Sc: 64.29  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
AGCCGGGTAGTCTAGTGGTcaA.GGATCCAGGGCTTTGGCCCCTGGG...........ACCAGGGTTCGAATCCCTGCCCGGCTA... chr.trna9-GlnTTG Sc: 64.85  



Glu tRNAs


>>>>>>>..>>>>..........................<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCCGCGGTGGTTTAGCCcGGTcAagcgcaggcaccgaaaGAATGCGGGCCTCTCGAGCCCGTG...........ACCCGGGTTCAAATCCCGGCCGCGGCA... chr.trna26-GluCTC Sc: 86.85  

>>>>>>>..>>>>..........................<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCCGCGGTGGTTTAGCCcGGTcAagcgcaggcaccgaaaGAATGCGGGCCTTTCGAGCCCGTG...........ACCCGGGTTCAAATCCCGGCCGCGGCA... chr.trna32-GluTTC Sc: 87.41  



Gly tRNAs



>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGCCGTAGTCTAGCCtGGAttAGGACGCCTGCCTGCCACGCAGGAG...........GtCCCGGGTTCAAATCCCGGCGGCCGCA... chr.trna10-GlyGCC Sc: 87.05  

>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGCCGTAGTCTAGGCtGGAttAGGACGCCGGCCTCCCAAGCCGGTG...........AtCCCGGGTTCAAATCCCGGCGGCCGCA... chr.trna30-GlyCCC Sc: 86.93  

>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGCCGTAGTCTAGGCtGGAttAGGACGCCGGCCTTCCAAGCCGGTG...........AtCCCGGGTTCAAATCCCGGCGGCCGCA... chr.trna8-GlyTCC Sc: 87.49  



His tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTCGGGTAGCTCAGCCtGGAAGAGCGCCGGGCTGTGGACCCGGAA...........GtCCCGGGTTCAAATCCCGGCCCGAGCC... chr.trna41-HisGTG Sc: 84.72  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>...................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTTAGCTtGGTGGAGCGCCCGGCTGATAgggtgctcagaaACCGGGAG...........GtCACGGGTTCAAATCCCGTCGGGCCCA... chr.trna22-IleGAT Sc: 79.85  




Leu tRNAs



>>>>>>>..>>>.............<<<.>>>>>.......................<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCTaGGGcaAAGGGGGCGGACTGAGG................CTCCGCTGGCGAAG....GCCTgCACGGGTTCAAATCCCGT.CCCCCGCA... chr.trna21-LeuGAG Sc: 67.68  

>>>>>>>..>>>.............<<<.>>>>>.......................<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCTaGGTcgAAGGGGGTAGGCTCAGG................CCCTACTGGTGAAG....GCCTtCGCGGGTTCAAATCCCGC.CCCCCGCA... chr.trna13-LeuCAG Sc: 64.19  

>>>>>>>..>>>.............<<<.>>>>>.......................<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCTaGGTcaAAGGGGGCAGGCTTAGG................CCCTGCTGGCGAAG....GCCTgCACGGGTTCAAATCCCGT.CCCCCGCA... chr.trna16-LeuTAG Sc: 66.71  

>>>>>>>..>>>.............<<<.>>>>>.......................<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCT.GGTcaAAGGGGGCGGACTCAAGaccccttaagtgagagATCCGCTGGCGAAG....GCCTtCGCGGGTTCAAATCCCGT.CCCCCGCA... chr.trna18-LeuCAA Sc: 64.53  

>>>>>>>..>>>.............<<<.>>>>>.......................<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCtGGTcaAAGGGGGCGGACTTAAGacccccaagtaagag.ATCCGCTGGCGAAG....GCCTgCACGGGTTCAAATCCCGT.CCCCCGCA... chr.trna12-LeuTAA Sc: 66.73  



Lys tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>..............................<<<<<................>>>>>.......<<<<<.<<<<<<<....
GGGCCCGTAGCTTAGCCaGGTAGAGCGACGGGCTCTTAaccatgtaagaaaagcggagat.ACCCGTA............GtCCCGGGTTCGAATCCCGG.CGGGCCCG... chr.trna43-LysCTT Sc: 79.03  

>>>>>>>..>>>>.........<<<<.>>>>>..............................<<<<<................>>>>>.......<<<<<.<<<<<<<....
GGGCCCGTAGCTCAGCCaGGTAGAGCGGCGGGCTTTTAaccgcaaagggttgcggaaagcaACCCGTAG...........GtCCCGGGTTCGAATCCCGG.CGGGCCCG... chr.trna44-LysTTT Sc: 89.68  



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTTAGCTcGGT.AGAGCGCTCGGCTCATA.........................ACCGAGTG...........GtCAGGGGTTCAAATCCCCTCGGGCCCA... chr.trna14-MetCAT Sc: 86.71  
GCCGCCGTAGCTCAGCCtGGTtAGAGCGCCGGACTCATAcgcgtaatatccgggaa........ATCCGGTT...........GtCCGGGGTTCAAATCCCCGCGGCGGCA... chr.trna11-MetCAT Sc: 84.56  
AGCGGGGTGGGCTAGCCtGGTaAGGCCGCGGGGCTCATAtactctttaaagcacgcgttgggaaACCCCGAG...........GtCCCTGGTTCAAATCCAGGCCCCGCTACCA chr.trna39-MetCAT Sc: 73.42  



Phe tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCCGTAGCTCAGCCcGGGAGAGCGCCCGGCTGAAGACCGGGTT...........GtCCGGGGTTCAAGTCCCCGCGGCGGCA... chr.trna29-PheGAA Sc: 84.13  



Pro tRNAs



>>>>>>>..>>>>...........<<<<.>>>>>............................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCGTAGTCTAGCTtGGActAGGATGCCAGCCTGGGGatactaccctaaccaccagaaCGCTGGTG...........GtCCCGGGTTCAAATCCCGGCGGCCCCA... chr.trna23-ProGGG Sc: 83.21  

>>>>>>>..>>>>...........<<<<.>>>>>............................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCCGTGGTCTAGCCtGGActAGGATGCGACGTTCGGG.....................TCGTCGTG...........GtCCCGGGTTCAAATCCCGGCGGACCCA... chr.trna6-ProCGG Sc: 73.26  

>>>>>>>..>>>>...........<<<<.>>>>>............................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCGTAGTCTAGCCtGGActAGGACGCCAGGCTTGGG.....................CCCTGGTG...........AtCGCGGGTTCAAATCCCGCCGGCCCCA... chr.trna1-ProTGG Sc: 85.70  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>..............<<<.>>>>>...............................<<<<<..>>>................<<<...>>>>>.......<<<<<.<<<<<<<....
GCCGGGGTGCCCGAGC..GGActA.AGGGGCTGGCCTGGAG........................AGCCAGTGGGG....GTTTc.......CCCG.CGCGGGTTCAAATCCCGC.CCCCGGCG... chr.trna38-SerGGA Sc: 72.11  

>>>>>>>..>>>..............<<<.>>>>>...............................<<<<<..>>>>>............<<<<<...>>>>>.......<<<<<.<<<<<<<....
GCCGGGGTGCCCGAGC..GGTc.A.AGGGGGTAGGCTCGAGacctttccagcgttactgcgagggACCTACT.GCCTCTC.........TGAGGCA.CACGGGTTCGAATCCCGT.CCCCGGCG... chr.trna28-SerCGA Sc: 50.78  

>>>>>>>..>>>..............<<<.>>>>>...............................<<<<<..>>>................<<<...>>>>>.......<<<<<.<<<<<<<....
GCCGGGGTGCCCGAGT..GGTccA.AGGGGCTGGCCTTGAG........................AGCCAGTAGGT....GTCTa.......GCCTgCGCGGGTTCAAATCCCGC.CCCCGGCG... chr.trna33-SerTGA Sc: 71.96  


>>>>>>>..>>>>............<<<<.>>>>>...............................<<<<<..>>>................<<<...>>>>>.......<<<<<.<<<<<<<....
GCCGAGGTCGCCTAGCCaGGT..A.GGGCGGCGGCCTGCTA........................AGCCGCTGGGGATC..........CTCCCCA.CGCGGGTTCAAATCCCGC.CCTCGGCG... chr.trna46-SerGCT Sc: 72.61  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>......................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCGGTAGCTCAGCCtGGCcAGAGCGCTGCCCTGGTA...............AGGCAGAG...........GtCCCGGGTTCAAATCCCGGCCGCGGCT... chr.trna20-ThrGGT Sc: 92.48  

>>>>>>>..>>>>..........<<<<.>>>>>......................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCCGTAGCTCAGCCtGGTtAGAGCGCCGGCCTCGTAcccaaagtgagat..AGCCGGCG...........GtCGCGGGTTCGAATCCCGCCGGCGGCT... chr.trna37-ThrCGT Sc: 85.82  

>>>>>>>..>>>>..........<<<<.>>>>>......................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCCGTAGCTCAGCCtGGTtAGAGCGCCGGCCTTGTAagttactgcctagatAGCCGGCG...........GtCGCGGGTTCGAATCCCGCCGGCGGCT... chr.trna24-ThrTGT Sc: 85.95  



Trp tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>........................................................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTTAGCCaGGTAGAGTACTGGGCTCCAGatattaatgctagacattgggtcttaagaccctttatggggatgaagtgtatctggagaggagagACCCAGTG...........GtCGCGGGTTCGAGTCCCGCCGGGCCCA... chr.trna45-TrpCCA Sc: 73.70  



Tyr tRNAs



>>>>>>>..>>>>...........<<<<.>>>>>....................<<<<<................>>>>>.......<<<<<<<<<<<<....
CCCGCCGTAGCTCAGCCcGGTttAGAGCGCCCGGCTGTAGataggggacagtaACCGGGTG...........GtCCGGGGTTCAAGTCCCCGCGGCGGGA... chr.trna27-TyrGTA Sc: 75.08  



Val tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTCGTCTAGCCtGGTtAGGACGTCGCCCTGACACGGCGGAG...........GtCCTGGGTTCAAATCCCAGCGGGCCCA... chr.trna36-ValGAC Sc: 84.21  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTCGTCTAGCTtGGTtAGGACGTCGCCCTCACACGGCGAAG...........AtCCTGGGTTCAAGTCCCAGCGGGCCCA... chr.trna3-ValCAC Sc: 79.41  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTCGTCTAGCCtGGTtAGGACGCTGCCCTTACGAGGCAGAG...........GtCCTGGGTTCAAATCCCAGCGGGCCCA... chr.trna15-ValTAC Sc: 88.14

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.