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tRNAscan-SE Analysis of Sulfolobus acidocaldarius DSM 639

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tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 1 395126 395216 View Glu TTC tttagattac ctttaaggtt 0 0 83.05 68.72 14.33   chr 2 427588 427656 View Asp GTC taggcttggg ctacttttac 0 0 41.68 33.49 8.19   chr 3 430670 430742 View Asp GTC attgccgcgt ttgtactaca 0 0 76.72 64.14 12.58   chr 4 442196 442268 View Gln CTG aagtatattt cctttgtggg 0 0 58.63 39.17 19.46   chr 5 499438 499521 View Leu TAA attcttagtt ctgtggggga 0 0 72.92 50.87 22.05   chr 6 512631 512740 View Ser CGA ggtaaatagt ttagtttaaa 512669 512693 51.08 28.60 22.48   chr 7 512779 512878 View Leu CAG tatattgatt attttagata 512819 512833 61.67 41.12 20.55   chr 8 515202 515293 View Met CAT atgttatagt gtatattaga 515240 515257 81.69 69.29 12.40   chr 9 535180 535254 View Arg CCG gaatttagat ctgtggggga 0 0 80.18 63.88 16.30   chr 10 579685 579758 View Ala GGC agtatattgt ctcttttgta 0 0 84.33 71.08 13.25   chr 11 608757 608852 View Lys TTT atttttagct cgctattttg 0 0 90.32 80.46 9.86   chr 12 694093 694183 View Glu CTC aatatatctc ctctcttagg 0 0 83.74 68.42 15.32   chr 13 799285 799369 View Leu GAG taatggtagt tggtggggga 0 0 66.50 45.03 21.47   chr 14 1096644 1096740 View Pro GGG aagttagagt taaccacctc 1096684 1096704 72.14 58.58 13.56   chr 15 1111007 1111090 View Leu CAA atttttagtt tcccccttat 0 0 69.34 49.76 19.58   chr 16 1166821 1166915 View Met CAT aaataaaatc ctgaagaatt 1166860 1166879 85.25 73.17 12.08   chr 17 1189756 1189830 View Arg TCG gttagtttat ctgtgggggt 0 0 88.32 76.50 11.82   chr 18 1300343 1300417 View Arg GCG gttagttcat ttgtgggggt 0 0 85.49 74.67 10.82   chr 19 1305998 1306072 View Pseudo GCG taactaatac ataatcttta 0 0 20.12 19.25 0.87   chr 20 2207779 2207852 View Ala CGC tagatttcat catttattaa 0 0 89.28 76.45 12.83   chr 21 2208914 2208989 View Pro CGG taaattagtg aactacaaag 0 0 75.25 61.22 14.03   chr 22 2181303 2181218 View Asn GTT atatagacat cgtctacaaa 2181266 2181254 65.79 49.99 15.80   chr 23 2160161 2160071 View Gly TCC taattatctc ttaaaaatat 2160121 2160107 74.64 62.85 11.79   chr 24 1241050 1240959 View Arg CCT atattatcat ctatactttt 1241011 1240995 82.31 72.07 10.24   chr 25 1240470 1240398 View Gln TTG aagtatactt ccttattggg 0 0 59.19 39.73 19.46   chr 26 1188479 1188389 View Thr TGT atttttattt tacttcctat 1188440 1188425 82.04 70.37 11.67   chr 27 1083512 1083439 View Ala TGC acataacaat ctgtgggggt 0 0 88.94 79.43 9.51   chr 28 1079156 1079083 View Ile GAT tgatataaat tgagagggtc 0 0 90.17 75.74 14.43   chr 29 1071144 1071070 View Thr GGT tttcatatat tacttttaca 0 0 89.15 73.81 15.34   chr 30 716550 716448 View Leu TAG tttgtgtctt ttcttgatca 716510 716493 61.40 40.85 20.55   chr 31 716324 716233 View Tyr GTA taatggaaga ttcctattac 716283 716269 74.52 56.06 18.46   chr 32 648852 648769 View Ser TGA atataatgct ttgtggggtt 0 0 70.15 42.74 27.41   chr 33 610622 610531 View Cys GCA atagttagat tcttaaaaaa 610584 610569 53.63 39.71 13.92   chr 34 607222 607121 View Lys CTT atttttagct cgctatttat 607184 607157 81.42 71.55 9.87   chr 35 594546 594472 View Val CAC tctaattatt tgtgggggac 0 0 83.13 65.64 17.49   chr 36 563615 563514 View Thr CGT aattatgaat tcccaggtgc 563576 563550 83.24 73.15 10.09   chr 37 542643 542559 View Ser GGA tcttattaat tagtggggga 0 0 64.06 42.13 21.93   chr 38 515780 515706 View Val GAC ctattagaga tttgggggat 0 0 78.62 63.84 14.78   chr 39 507601 507527 View Val TAC aatagcttga tacttttaca 0 0 87.40 75.20 12.20   chr 40 500125 500057 View Val TAC agcgttactc tatgttatac 0 0 25.08 19.83 5.25   chr 41 458927 458836 View Phe GAA taataataat tcacggctta 458889 458872 75.00 60.81 14.19   chr 42 458720 458630 View Gly CCC tattaatatt ttcatacttc 458680 458666 73.59 61.80 11.79   chr 43 440438 440363 View Gly GCC atatctgcct ttgtggggga 0 0 83.53 72.74 10.79   chr 44 430538 430465 View Met CAT ggggtaaaat atgcttccct 0 0 80.08 55.17 24.91   chr 45 387747 387673 View His GTG ttgtagtttg ctttttatgt 0 0 81.31 62.27 19.04   chr 46 138804 138713 View Arg TCT tctggtaatt ctgtacccac 138765 138749 83.20 72.97 10.23   chr 47 72657 72570 View Ser GCT agtacttatt tgaatattat 0 0 73.12 50.89 22.23   chr 48 49294 49161 View Trp CCA gatcgataat ttatttttag 49256 49197 75.25 62.03 13.22   chr 49 48109 48034 View Pro TGG gttatagtga gactaaaaaa 0 0 83.31 69.30 14.01   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.