GtRNAdb

tRNAscan-SE Analysis of Streptococcus thermophilus LMG 18311

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tRNAs Sorted by tRNA Isoacceptor Typeplain text version
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 1 19420 19492 Ala TGC gaggtcttgt ttgaatcgaa0 0 84.64 67.4517.19  
chr 19 68401 68473 Ala TGC gaggtcttgt ttgaatcgaa0 0 84.64 67.4517.19  
chr 33 130645 130717 Ala TGC gaggtcttgt ttgaatcgaa0 0 84.64 67.4517.19  
chr 43 136452 136524 Ala TGC gaggtcttgt ttgaatcgaa0 0 84.64 67.4517.19  
chr 45 359975 360047 Ala TGC gaggtcttgt ttgaatcgaa0 0 84.64 67.4517.19  
chr 61 1612098 1612026 Ala TGC gaggtcttgt ttgaatcgaa0 0 84.64 67.4517.19  
 
chr 41 134567 134640 Arg ACG ttaataataa tttttatcgg0 0 74.41 53.4121.00  
chr 9 23342 23415 Arg ACG ttaataataa tttttatcgg0 0 74.41 53.4121.00  
chr 54 564815 564886 Arg CCG tatactgtta aagtggaaac0 0 53.23 29.8423.39  
chr 67 1036414 1036343 Arg CCT tttttaataa ttttaaagcc0 0 60.36 32.8827.48  
chr 56 1793242 1793315 Arg TCT tagagttatt gatgaaaaaa0 0 84.24 61.3322.91  
 
chr 44 139776 139849 Asn GTT ttagccttta tataattttt0 0 76.37 53.2623.11  
chr 58 1792959 1792886 Asn GTT agcagtttta tgataagaca0 0 76.37 53.2623.11  
chr 62 1608769 1608696 Asn GTT ttagccttta tataattttt0 0 76.37 53.2623.11  
 
chr 3 22819 22891 Asp GTC aactcccata ttcaagtaga0 0 72.61 46.2326.38  
chr 35 134044 134116 Asp GTC aactcccata ttcaagtaga0 0 72.61 46.2326.38  
chr 47 363374 363446 Asp GTC aactcccata ttcaagtaga0 0 72.61 46.2326.38  
 
chr 32 82562 82632 Cys GCA tattagttat ttgtataatg0 0 60.11 41.7618.35  
 
chr 30 72576 72647 Gln TTG cgcctatttt taaaactttg0 0 64.56 36.7427.82  
chr 65 1254293 1254222 Gln TTG aagagtcttt ttctatctga0 0 64.56 36.7427.82  
chr 53 563352 563426 Gln TTG attttgttat atggtatcgg0 0 65.18 37.3427.84  
 
chr 23 71986 72057 Glu TTC cccattatat tattttatgg0 0 64.66 38.0126.65  
chr 51 363720 363791 Glu TTC gcattaagat tatttgagta0 0 64.66 38.0126.65  
chr 57 1793053 1792982 Glu TTC ctcaaaactt tttttgctac0 0 64.66 38.0126.65  
chr 66 1254192 1254121 Glu TTC tacagattat taagctccag0 0 64.66 38.0126.65  
 
chr 39 134389 134460 Gly GCC ggcataaaac tgaggagccg0 0 83.78 59.7124.07  
chr 7 23164 23235 Gly GCC ggcataaaac tgaggagccg0 0 83.78 59.7124.07  
chr 16 23944 24014 Gly TCC ttgttgttaa ttatttggaa0 0 71.92 46.6325.29  
chr 21 71802 71872 Gly TCC ctcccattta ttatttggaa0 0 71.92 46.6325.29  
 
chr 29 72497 72569 His GTG taataaggtg tatttttggg0 0 67.29 40.7026.59  
 
chr 17 24048 24121 Ile GAT catttagctt tattggagaa0 0 86.10 68.6617.44  
chr 22 71906 71979 Ile GAT catttagctt ttatatggtc0 0 86.10 68.6617.44  
 
chr 60 1694013 1693928 Leu AAG aatgttgtta agagtaacca0 0 63.89 37.1726.72  
chr 31 72657 72740 Leu CAA gtaaaacttt taagttgcac0 0 70.28 43.5726.71  
chr 55 1603489 1603571 Leu CAG tactatcact tagcaaaaat0 0 55.90 29.4926.41  
chr 40 134467 134552 Leu TAA cgcttgagga taacttaata0 0 68.86 37.2731.59  
chr 8 23242 23327 Leu TAA cgcttgagga taacttaata0 0 68.86 37.2731.59  
chr 37 134214 134295 Leu TAG ggtcatatat ttagaaaaaa0 0 68.97 48.2920.68  
chr 49 363544 363625 Leu TAG ggtcatatat ttagaaaaaa0 0 68.97 48.2920.68  
chr 5 22989 23070 Leu TAG ggtcatatat ttagaaaaaa0 0 68.97 48.2920.68  
 
chr 59 1733045 1732970 Lys CTT acagcatcca aacttcaaca0 0 85.05 66.0319.02  
chr 36 134136 134208 Lys TTT aaatatttga tatatgcggg0 0 82.17 57.5024.67  
chr 4 22911 22983 Lys TTT aaatatttga tatatgcggg0 0 82.17 57.5024.67  
chr 48 363466 363538 Lys TTT aaatatttga tatatgcggg0 0 82.17 57.5024.67  
 
chr 14 23782 23855 Met CAT ttataattaa tatggctcgg0 0 74.60 49.4025.20  
chr 25 72165 72238 Met CAT ttataattaa tatggctcgg0 0 74.60 49.4025.20  
chr 11 23502 23575 Met CAT cccgattaat tatatggatt0 0 76.98 66.8510.13  
chr 12 23590 23663 Met CAT tggattactt tatattattt0 0 89.74 66.4923.25  
 
chr 15 23859 23931 Phe GAA cccgcaatat ttttgttgtt0 0 75.06 63.1311.93  
chr 26 72242 72314 Phe GAA cccgcaatat tttatttata0 0 75.06 63.1311.93  
 
chr 10 23423 23496 Pro TGG gcatttttat ttaatggcgg0 0 86.85 64.8422.01  
chr 42 134648 134721 Pro TGG gcatttttat ttaagacctt0 0 86.85 64.8422.01  
 
chr 18 24126 24213 Ser GCT tgcccatatt tattatgacg0 0 57.63 21.1136.52  
chr 63 1423178 1423092 Ser GGA cgtttgatat tttcagaaat0 0 53.70 28.0125.69  
chr 13 23683 23772 Ser TGA tataatattg tataattaac0 0 61.73 28.4033.33  
chr 24 72066 72155 Ser TGA tatattttat tataattaac0 0 61.73 28.4033.33  
 
chr 64 1345622 1345552 Thr GGT agaaacagtt tctgtgaatg0 0 50.60 19.4831.12  
chr 38 134310 134382 Thr TGT aaaaaagtta taaaacgcga0 0 83.52 59.0324.49  
chr 50 363640 363712 Thr TGT aaaaaagtta ttaagatggt0 0 83.52 59.0324.49  
chr 6 23085 23157 Thr TGT aaaaaagtta taaaacgcga0 0 83.52 59.0324.49  
 
chr 28 72415 72485 Trp CCA ttccatagtt ttaataaggt0 0 53.01 27.0325.98  
 
chr 27 72329 72409 Tyr GTA tttatatttt tagttacggg0 0 65.00 37.5927.41  
chr 52 563203 563283 Tyr GTA ttgttcttaa tgtctaagaa0 0 66.36 40.2226.14  
 
chr 2 22744 22816 Val TAC ttagcaaata taggtcccgt0 0 84.84 63.4021.44  
chr 20 71725 71797 Val TAC ttagcaaata tttagcgggt0 0 84.84 63.4021.44  
chr 34 133969 134041 Val TAC ttagcaaata taggtcccgt0 0 84.84 63.4021.44  
chr 46 363299 363371 Val TAC ttagcaaata taggtcccgt0 0 84.84 63.4021.44  


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.