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tRNAscan-SE Analysis of Staphylothermus marinus F1

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tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 32 1415757 1415658 View Ala CGC attatggtgt tctacataaa 1415719 1415697 88.69 78.18 10.51   chr 13 798271 798347 View Ala GGC agggttttat tattactacg 0 0 87.98 75.24 12.74   chr 18 932919 933035 View Ala TGC acttaagggt tatattttct 932957 932996 87.14 76.63 10.51     chr 1 394378 394452 View Arg CCG agacaaaaac catcaacacc 0 0 89.38 80.75 8.63   chr 36 1101838 1101742 View Arg CCT agataataaa catatatttt 1101799 1101778 77.77 67.51 10.26   chr 38 911866 911771 View Arg GCG aggtcttcat cttctaataa 911827 911807 82.47 73.84 8.63   chr 5 563835 563910 View Arg TCG aggagaaaaa ctgtacagta 0 0 88.92 80.28 8.64   chr 23 1056248 1056322 View Arg TCT aataatactt catttctatt 0 0 88.76 78.51 10.25     chr 16 851283 851387 View Asn GTT atgatagggt ctctctccta 851321 851351 82.64 68.93 13.71     chr 8 667818 667892 View Asp GTC acacagaaaa ctatcaattc 0 0 80.23 66.27 13.96     chr 29 1106557 1106680 View Cys GCA aatatgaaga aatttctagt 1106595 1106640 59.36 42.69 16.67     chr 26 1099327 1099426 View Gln CTG tgaaataagt ttctatttac 1099365 1099388 61.16 41.81 19.35   chr 11 793316 793417 View Gln TTG aaatagaagt cttttaactt 793354 793379 60.54 41.19 19.35     chr 22 1038694 1038805 View Glu CTC atacctagaa tataaaaatc 1038734 1038762 59.67 53.15 6.52   chr 45 622722 622648 View Glu TTC atacagagaa ctttttctac 0 0 81.87 67.45 14.42     chr 35 1183700 1183622 View Gly CCC ttgtatatat tacttatcct 0 0 84.81 74.92 9.89   chr 6 624851 624954 View Gly GCC gtattgatat attctaatct 624891 624915 79.23 69.35 9.88   chr 21 1022056 1022131 View Gly TCC gatgctagat ttaccttaat 0 0 83.75 73.64 10.11     chr 41 693775 693666 View His GTG attataagtg cttaaaatta 693738 693702 79.66 68.03 11.63     chr 31 1163786 1163859 View Ile GAT aagagtaaat ctcaaattct 0 0 89.38 75.89 13.49     chr 33 1284673 1284612 View Leu CAA caaaataggg cttctataat 0 0 26.23 25.99 0.24   chr 42 643064 642942 View Leu CAA atggagaaaa tctaaattac 643024 642990 68.32 46.49 21.83   chr 3 558427 558514 View Leu CAG atgaattagc taataacaat 0 0 77.67 56.77 20.90   chr 10 767378 767465 View Leu GAG atataatggt taaaatctcc 0 0 81.52 62.55 18.97   chr 15 841469 841590 View Leu TAA aataaatggt ccttatttta 841509 841542 71.42 49.59 21.83   chr 43 633338 633251 View Leu TAG atataatggt taaaatgctt 0 0 81.44 60.54 20.90     chr 12 793528 793601 View Lys TTT gaagggttat cttctataaa 0 0 92.08 82.21 9.87     chr 2 555816 555924 View Met CAT ggggcaaaac ttatgggggt 0 0 80.41 54.16 26.25   chr 39 909644 909571 View Met CAT tgggcaccgg catactttta 0 0 93.97 82.51 11.46   chr 27 1102260 1102371 View Met CAT aaaaattgaa tttttcatcc 1102298 1102335 84.66 74.19 10.47     chr 37 1021027 1020954 View Phe GAA tattgaaaac tctttttctt 0 0 88.65 74.45 14.20     chr 19 969002 969114 View Pro CGG aattatgaat ttcctaacta 969042 969078 63.21 49.39 13.82   chr 34 1198387 1198279 View Pro GGG gaaaaagaag ctattggttt 1198348 1198315 77.47 67.26 10.21   chr 28 1102472 1102579 View Pro TGG gtgatattgg ctactaacta 0 0 83.85 69.56 14.29     chr 4 563621 563770 View Ser CGA aacaggaaaa cactcctcac 563659 563718 48.45 28.94 19.51   chr 17 864114 864198 View Ser GCT agggagagga ccttctatga 0 0 79.19 62.63 16.56   chr 14 810962 811050 View Ser GGA taattagaat cttctttata 0 0 70.75 50.36 20.39   chr 20 1017186 1017274 View Ser TGA aaatagagga ttatttttcg 0 0 71.75 50.27 21.48     chr 40 883502 883401 View Thr CGT atatagagga cataatcaaa 883464 883437 84.64 74.45 10.19   chr 30 1116245 1116333 View Thr GGT taaaaacgtt tttaacttct 1116284 1116297 80.20 68.28 11.92   chr 46 427592 427465 View Thr TGT ttaatgaata ctcttttcct 427554 427501 83.17 72.99 10.18     chr 24 1065864 1066040 View Trp CCA gactgttggt tgatctctgt 79 140 77.75 66.38 11.37     chr 7 625683 625850 View Tyr GTA tattataggt tttaatttat 625719 625811 65.31 47.06 18.25     chr 9 719035 719112 View Val CAC acataaagtt tgcaatccta 0 0 91.03 78.05 12.98   chr 25 1066315 1066408 View Val GAC aacaatattt ctattaataa 1066354 1066372 81.08 67.88 13.20   chr 44 633113 633007 View Val TAC gtttgtggaa cttctcctag 633074 633043 81.02 67.82 13.20   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.