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tRNAscan-SE Analysis of Strongylocentrotus purpuratus (Sea urchin) (Version 2.1)

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str Scaffold10423 2 25157 25084 Ile TAT atatgttcat aggggatttt 0 0 59.43 51.03 8.40 Both Scaffold10423 3 24395 24322 Leu TAA attatgtcga aaagaggatt 0 0 63.58 47.05 16.53 Eufind Scaffold10423 4 18717 18644 Ile TAT atatgttcat aggggatttt 0 0 59.43 51.03 8.40 Both Scaffold10423 5 17957 17884 Leu TAA attatgtcga atagaggatt 0 0 67.81 42.32 25.49 Eufind Scaffold10423 6 10054 9981 Leu TAA atatgttcat agtggatatt 0 0 59.51 51.12 8.39 Both Scaffold10423 7 8681 8608 Leu TAA attatatcga atagaggatt 0 0 74.12 47.65 26.47 Eufind Scaffold10423 8 7619 7546 Leu TAA attatatcga atagaggatt 0 0 74.12 47.65 26.47 Eufind Scaffold10423 9 5833 5761 Leu TAA taatacattt tgagatgatt 0 0 64.26 56.37 7.89 Eufind Scaffold10423 11 4665 4593 Phe AAA atattgtcaa tgagagatga 0 0 59.12 44.18 14.94 Eufind   Scaffold11326 1 622 694 Arg ACG catacagatc aattttttat 0 0 68.85 53.16 15.69 Both   Scaffold12153 8 129714 129643 Gln TTG cagcaataat ctcatttttt 0 0 71.06 46.27 24.79 Both   Scaffold12160 1 141837 141767 Ile TAT atatccagaa agtgatgttg 0 0 59.46 36.83 22.63 Both Scaffold12160 2 125241 125169 Ile AAT gccaggaata gatccattat 0 0 70.45 46.13 24.32 Both   Scaffold12734 5 416328 416257 His GTG ttgttgtgaa gcctccattt 0 0 64.02 45.65 18.37 Both   Scaffold12736 3 97318 97246 Thr TGT gccagcgaac atttgtttta 0 0 78.88 56.83 22.05 Both   Scaffold13735 1 32838 32910 Val TAC catacccata ctctctttta 0 0 79.90 56.23 23.67 Both   Scaffold14520 2 59283 59360 Ser ACT attcaagtag aacgcaatta 59320 59324 34.87 25.62 9.25 Both   Scaffold14536 3 48004 47931 Asn GTT tgtcagctaa actgcctcct 0 0 78.57 54.95 23.62 Both   Scaffold14574 1 6340 6411 Gly TCC taaacacaaa gttgttgggg 0 0 77.09 56.90 20.19 Both   Scaffold14607 2 5824 5754 Gly GCC tcagcatgta tttttgttgt 0 0 77.63 56.48 21.15 Both Scaffold14607 3 5325 5255 Gly GCC tcagcatgta tatttttgtc 0 0 77.63 56.48 21.15 Both Scaffold14607 4 4181 4111 Gly GCC gacgtggaaa actttttttc 0 0 74.44 53.29 21.15 Both   Scaffold15457 2 174593 174664 Pro TGG catcaagcaa cgtgtattct 0 0 71.64 48.51 23.13 Both Scaffold15457 5 175709 175638 Pro CGG ctcatgaagc ctattttgcc 0 0 77.32 54.20 23.12 Both Scaffold15457 6 173553 173482 Pro AGG cagcaagcat aggttttcgc 0 0 68.06 48.19 19.87 Both Scaffold15457 7 173227 173157 Pro AGG atgcaagcat ccatattttt 0 0 60.77 41.06 19.71 Both Scaffold15457 8 172896 172825 Pro AGG cagcaagcat cgaagttttt 0 0 68.06 48.19 19.87 Both Scaffold15457 9 172569 172498 Pro AGG cagcaagcat cgaagttttt 0 0 68.06 48.19 19.87 Both Scaffold15457 10 172234 172163 Pro AGG atgcaagcgt caagtttttg 0 0 68.06 48.19 19.87 Both Scaffold15457 11 171920 171849 Pro AGG atgcaagcat gcaataattt 0 0 56.10 38.20 17.90 Both   Scaffold16307 4 308774 308845 His GTG aatcactcaa ttttttgttt 0 0 68.89 44.18 24.71 Both Scaffold16307 5 313739 313810 His GTG aatcactcaa ttttatatta 0 0 68.89 44.18 24.71 Both Scaffold16307 6 313895 313966 His GTG aatcatgcaa ttttatatta 0 0 68.89 44.18 24.71 Both Scaffold16307 7 314051 314122 His GTG aatcatgcaa ttttttatta 0 0 68.89 44.18 24.71 Both Scaffold16307 8 314207 314278 His GTG aatcatgcaa ttttttgtgt 0 0 61.98 37.27 24.71 Both Scaffold16307 9 319630 319701 His GTG agccactcaa tttttttttc 0 0 69.59 44.88 24.71 Both Scaffold16307 10 320562 320633 His GTG aatcaggcaa tttgttgttt 0 0 68.89 44.18 24.71 Both   Scaffold16311 2 237592 237520 Lys TTT atttatagaa agataatttt 0 0 78.52 64.15 14.37 Both   Scaffold16316 3 218663 218592 Glu CTC ttgcatgaaa ggttactttt 0 0 77.33 52.65 24.68 Both   Scaffold1651 4 230406 230335 Asp GTC ctctcataaa atctacattt 0 0 72.81 46.24 26.57 Both   Scaffold1652 3 129732 129803 Met CAT cactgtcatg agtcatacca 0 0 59.75 54.61 5.14 Eufind   Scaffold1654 4 220211 220140 Thr CGT aagtcgtgga tatttttgaa 0 0 67.74 48.24 19.50 Both Scaffold1654 5 135030 134959 Thr CGT aagtcgtaga tatttttgaa 0 0 67.74 48.24 19.50 Both   Scaffold17177 8 244936 244855 Ser GCT tatatattca agatttttat 0 0 85.34 57.77 27.57 Both   Scaffold17178 2 520154 520235 Leu TAG gtttcatcga atacgttttt 0 0 64.37 42.12 22.25 Both   Scaffold17302 1 1426 1498 Ala AGC tgcaggcgaa taatgtgatc 0 0 54.25 36.90 17.35 Both Scaffold17302 2 2514 2586 Ala AGC tgcaggcgaa taatgtgatc 0 0 56.48 37.45 19.03 Both Scaffold17302 3 4922 4994 Ala AGC tgcaggcgaa aaatgtgatc 0 0 62.77 39.52 23.25 Both Scaffold17302 4 6027 6099 Ala AGC tgcagacgaa caatgtgatc 0 0 57.88 36.38 21.50 Both Scaffold17302 5 7112 7184 Ala AGC tgcaggcgaa taatgtgatc 0 0 59.60 38.52 21.08 Both Scaffold17302 6 8215 8287 Ala AGC tgcaggcgaa taatgtgatc 0 0 63.58 40.32 23.26 Both Scaffold17302 7 11988 12060 Ala AGC tgcagacgaa taatgtgatc 0 0 63.58 40.32 23.26 Both Scaffold17302 8 13314 13386 Ala AGC tgcagacgaa agatgcgatc 0 0 63.58 40.32 23.26 Both Scaffold17302 9 20145 20217 Ala AGC cttttaccaa atcattttat 0 0 64.20 41.40 22.80 Both Scaffold17302 10 20325 20397 Ala AGC cttgcatcaa attattttat 0 0 64.20 41.40 22.80 Both Scaffold17302 11 20505 20577 Ala AGC cttgcaccaa actattttgt 0 0 64.20 41.40 22.80 Both   Scaffold18968 3 164942 164871 His GTG aatcactcaa tttgttgttt 0 0 68.89 44.18 24.71 Both Scaffold18968 4 154325 154254 His GTG aaccatgcaa tttttatttt 0 0 69.59 44.88 24.71 Both Scaffold18968 5 153842 153771 His GTG agtcatgcaa ttttttttct 0 0 69.59 44.88 24.71 Both   Scaffold19028 1 5431 5503 Met CAT gtgcgtagca ctgcttccct 0 0 75.19 56.89 18.30 Both   Scaffold19936 2 40300 40229 Thr CGT aaacatgcga aagaatctgt 0 0 73.90 51.06 22.84 Both Scaffold19936 3 40144 40073 Thr CGT aaacatgcga aaaatctttt 0 0 73.90 51.06 22.84 Both Scaffold19936 4 39838 39767 Thr CGT aaacatgcaa aagattcttt 0 0 73.90 51.06 22.84 Both Scaffold19936 5 39685 39614 Thr CGT aaacatgcaa aatattcttt 0 0 73.90 51.06 22.84 Both Scaffold19936 6 39533 39462 Thr CGT aaatatgcga aagattcttt 0 0 68.32 50.02 18.30 Both Scaffold19936 7 39380 39309 Thr CGT aaacatgcga aagattcttt 0 0 71.12 49.60 21.52 Both Scaffold19936 8 39224 39153 Thr CGT aaacatgcga aagatgctat 0 0 65.98 43.14 22.84 tRNAscan   Scaffold20798 6 262441 262369 Thr AGT gatatcgagc tttgtcggtc 0 0 78.34 57.42 20.92 Both   Scaffold20807 1 227075 227004 Asp GTC ttcagcgaat gcttcatttt 0 0 71.49 44.92 26.57 Both   Scaffold20814 1 46767 46840 Asn GTT gtataacgaa ttactctttt 0 0 80.75 57.13 23.62 Both Scaffold20814 2 47233 47304 Gly TCC aaaagaggga ataaattttg 0 0 70.18 49.99 20.19 Both Scaffold20814 3 47559 47630 Gly TCC aaaagaggga atgaattgta 0 0 60.01 54.80 5.21 Eufind Scaffold20814 4 47924 47997 Asn GTT atataacgaa ttaatttttt 0 0 80.75 57.13 23.62 Both Scaffold20814 5 48394 48465 Glu TTC aaaagtggga atgaattttg 0 0 63.69 46.73 16.96 Both Scaffold20814 6 48748 48821 Asn GTT atataacgaa ttagtccttt 0 0 80.75 57.13 23.62 Both Scaffold20814 7 49215 49287 Gly TCC gaaagaggga attaattttg 0 0 75.42 55.23 20.19 Both Scaffold20814 8 49578 49651 Asn GTT atataacgaa ttagtccttt 0 0 80.75 57.13 23.62 Both Scaffold20814 9 49814 49887 Asn GTT gtataacgaa ttagtcctgt 0 0 80.75 57.13 23.62 Both Scaffold20814 10 58585 58658 Asn GTT agatagcgaa ttaattcttt 0 0 78.57 54.95 23.62 Both Scaffold20814 11 58192 58119 Asn GTT attcatcgaa acattttttt 0 0 78.57 54.95 23.62 Both   Scaffold20851 1 38694 38766 Ala AGC atccagcgaa agatgcaatt 0 0 63.58 40.32 23.26 Both Scaffold20851 2 39681 39753 Ala AGC atccattgaa agatgcgatc 0 0 63.58 40.32 23.26 Both Scaffold20851 3 40685 40757 Ala AGC atccattgaa agatgcgatc 0 0 63.58 40.32 23.26 Both Scaffold20851 4 41673 41745 Ala AGC caccagcgaa agatgcgatc 0 0 63.58 40.32 23.26 Both Scaffold20851 5 43038 43110 Ala AGC tatccagcga agatgcgatc 0 0 56.15 36.50 19.65 Both Scaffold20851 6 43699 43771 Ala AGC atcctgcgaa taatgtgatc 0 0 63.58 40.32 23.26 Both Scaffold20851 7 44783 44855 Ala AGC tgcaggcgaa taatgtgatc 0 0 63.58 40.32 23.26 Both Scaffold20851 8 45975 46047 Ala AGC tcccatttca taacgtgatc 0 0 56.15 37.84 18.31 Both   Scaffold21531 3 1174 1101 Met CAT ctactgggta accaaagact 0 0 55.16 49.94 5.22 Eufind   Scaffold21624 1 3202 3273 Gln TTG taacaggcag ctttcttttg 0 0 62.09 43.81 18.28 Both Scaffold21624 2 3730 3801 Gln TTG taacaggcaa ctacattttg 0 0 66.99 48.71 18.28 Both Scaffold21624 3 4406 4477 Gln TTG aaataggcaa ctttcttttg 0 0 66.99 48.71 18.28 Both Scaffold21624 4 5254 5325 Gln TTG aaataggcaa ctttcttttg 0 0 66.99 48.71 18.28 Both   Scaffold22290 1 268520 268591 Trp CCA tgtatatcat tatagtttta 0 0 75.55 51.86 23.69 Both Scaffold22290 8 269895 269824 Met CAT tcctcatcga aacttttttt 0 0 70.54 43.12 27.42 Both   Scaffold22295 1 15355 15426 His GTG ttgttgtgaa atctcctttt 0 0 64.02 45.36 18.66 Both Scaffold22295 2 119061 119134 Arg TCT gaacaagtgc gaaattttgg 0 0 72.83 52.75 20.08 Both Scaffold22295 7 199393 199320 Arg TCT agcatgcgat gaatttttcc 0 0 72.83 52.75 20.08 Both Scaffold22295 8 197764 197691 Arg TCT tgcaagtctt ggttaatttt 0 0 79.58 60.43 19.15 Both   Scaffold22977 2 34766 34847 Ser TGA tatccaagaa cgatgtggtt 0 0 86.84 53.89 32.95 Both Scaffold22977 3 35690 35771 Ser CGA tgtacgtaca tgacgtggat 0 0 84.57 53.33 31.24 Both Scaffold22977 4 36817 36898 Ser TGA atctcgtaga tgatgtggtt 0 0 86.84 53.89 32.95 Both Scaffold22977 5 37774 37855 Ser TGA tgcacgtaga taatgtggtt 0 0 79.41 51.41 28.00 Both Scaffold22977 6 40642 40723 Ser TGA ttttcgtaga tgatgtggtt 0 0 86.84 53.89 32.95 Both Scaffold22977 7 45328 45409 Ser TGA ggcggcggga ttactttttt 0 0 85.70 55.83 29.87 Both Scaffold22977 13 35224 35143 Ser CGA tgtacataga taatgtgtta 0 0 87.69 54.76 32.93 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str Scaffold22997 1 2260 2331 Glu CTC gcgtgtcaaa ggtatctttc 0 0 77.33 52.65 24.68 Both Scaffold22997 2 4491 4562 Glu CTC aacgagtcaa gatatctttc 0 0 69.53 44.85 24.68 Both   Scaffold23017 1 41191 41118 Asn GTT ggacatgcaa gccgttactt 0 0 78.57 54.95 23.62 Both   Scaffold2311 6 193086 193015 Glu TTC tcatatacaa gatatctttt 0 0 79.19 55.06 24.13 Both Scaffold2311 8 189102 189031 Glu TTC tcatatataa tattcatttt 0 0 73.08 48.95 24.13 Both Scaffold2311 9 188524 188453 Glu TTC gatcaacaaa gatatctttt 0 0 79.19 55.06 24.13 Both Scaffold2311 10 188112 188041 Glu TTC aattacctaa atgttatttt 0 0 77.82 55.09 22.73 Both   Scaffold23793 10 863447 863519 Arg CCT gagcatgtaa tgtgcataat 0 0 66.41 50.08 16.33 Both   Scaffold2381 1 19306 19378 Ala AGC gtgcgtgaga aaggcatgga 0 0 64.20 41.40 22.80 Both Scaffold2381 2 20752 20824 Ala TGC ctgtagtcaa atatggtgga 0 0 57.11 30.80 26.31 Both Scaffold2381 3 23346 23418 Ala TGC ctgtagtcaa atatggtgga 0 0 57.11 30.80 26.31 Both   Scaffold24545 4 451816 451897 Ser TGA atttcgtaga tgatgtggtt 0 0 84.21 52.97 31.24 Both Scaffold24545 5 452541 452622 Ser CGA tttacgtaca tgattttttt 0 0 77.64 53.35 24.29 Both   Scaffold24611 1 6138 6066 Met CAT cgtattaccg taccaaagac 0 0 56.08 47.17 8.91 Eufind   Scaffold25556 2 161369 161441 Lys CTT agtaataaca tcctttttta 0 0 82.55 61.95 20.60 Both   Scaffold25557 5 482458 482583 Unknown NCA ttaacgcagt tagcatttta 482496 482537 63.33 38.10 25.23 Both   Scaffold25573 3 76933 77004 His GTG ttgtggtgaa ggggccattt 0 0 75.54 56.89 18.65 Both Scaffold25573 4 90068 90139 His GTG cgtgtggcaa ttttttgtct 0 0 69.59 44.88 24.71 Both   Scaffold25574 4 110609 110538 Gln CTG cctcatccaa aaatactttt 0 0 66.98 46.61 20.37 Both Scaffold25574 5 109059 108984 Gln CTG tttacaaatc cctttttctt 0 0 60.72 35.02 25.70 Eufind   Scaffold26350 4 271772 271843 Gly TCC tctctaggaa actttttttt 0 0 71.94 51.75 20.19 Both Scaffold26350 10 569196 569125 Gly TCC tttctatgaa acgttttttt 0 0 71.94 51.75 20.19 Both   Scaffold26360 3 7859 7778 Ser GCT gttcttaaga tttgctttac 0 0 85.34 57.77 27.57 Both   Scaffold26363 2 114844 114763 Leu AAG cattcaacaa tattatttta 0 0 54.53 32.64 21.89 Both Scaffold26363 3 114257 114176 Leu AAG tgaacatcaa atatattttg 0 0 53.94 38.71 15.23 Both Scaffold26363 5 110617 110537 Leu TAG tgcacatcaa ttattttttg 0 0 53.54 36.16 17.38 Both Scaffold26363 6 110042 109961 Leu AAG tgcacatcaa taatattttg 0 0 54.53 32.64 21.89 Both Scaffold26363 9 106588 106507 Leu TAG tgcacatcaa ttatattttg 0 0 61.20 39.32 21.88 Both Scaffold26363 10 106015 105934 Leu AAG tggacattaa ttatattttg 0 0 50.51 33.23 17.28 Both Scaffold26363 11 101228 101147 Leu AAG catttaccaa tattatttta 0 0 64.54 42.65 21.89 Both Scaffold26363 12 100643 100562 Leu AAG tgaacatcaa atatattttg 0 0 62.45 40.57 21.88 Both Scaffold26363 13 100085 100004 Leu TAG tgcacatcaa ttattttttg 0 0 62.69 40.80 21.89 Both Scaffold26363 14 99509 99428 Leu AAG tgcacatcaa taatattttg 0 0 54.53 32.64 21.89 Both Scaffold26363 15 98929 98848 Leu AAG tgaacatcaa atatattttg 0 0 62.45 40.57 21.88 Both Scaffold26363 16 98368 98287 Leu TAG tgcacatcaa ttattttttg 0 0 62.69 40.80 21.89 Both Scaffold26363 17 97792 97711 Leu AAG tgcacatcaa taatattttg 0 0 59.89 38.00 21.89 Both Scaffold26363 18 97212 97131 Leu AAG tgaacatcaa taatattttg 0 0 62.45 40.57 21.88 Both Scaffold26363 19 96639 96558 Leu AAG tggacattaa ttatattttg 0 0 37.47 20.55 16.92 Both Scaffold26363 20 95679 95598 Leu AAG tggacatcaa aactgttttg 0 0 60.71 38.83 21.88 Both Scaffold26363 21 82183 82102 Leu AAG tgcacatcaa taacattttg 0 0 62.45 40.57 21.88 Both   Scaffold27004 1 125560 125641 Ser GCT accatcatag tcatcctttt 0 0 85.34 57.77 27.57 Both   Scaffold27047 1 8923 8994 Gly TCC gtcgtgcgaa gatggcatat 0 0 71.86 51.67 20.19 Both Scaffold27047 2 12072 12143 Gly TCC gtcgtgcgaa gatggcatat 0 0 69.86 51.85 18.01 Both   Scaffold28094 1 82172 82244 Lys TTT ttaaatgtga atgtccagat 0 0 78.76 55.38 23.38 Both Scaffold28094 2 74604 74532 Lys TTT taatgaacaa actacttaat 0 0 78.76 55.38 23.38 Both Scaffold28094 3 40482 40410 Lys TTT gagcgctaaa taggcattat 0 0 80.97 57.59 23.38 Both   Scaffold28746 1 66413 66485 Met CAT tctatgaccg taccaacgac 0 0 58.12 52.02 6.10 Eufind   Scaffold28750 1 74566 74647 Leu TAG ttttgctgaa atatttcttt 0 0 65.14 43.26 21.88 Both   Scaffold28851 1 3246 3174 Arg CCT cgcgtgagca tttatgtgga 0 0 63.64 48.63 15.01 Both   Scaffold29774 14 270105 270024 Leu AAG tctttatcaa atagcttttg 0 0 56.04 37.78 18.26 Both   Scaffold30568 4 161859 161788 Pro CGG cataaaccat ttcttttgct 0 0 77.32 54.20 23.12 Both   Scaffold30674 1 4707 4636 Trp CCA attgtatctt cataattttt 0 0 71.45 47.77 23.68 Both Scaffold30674 2 1373 1302 Met CAT ttctcatcga aatttttttt 0 0 70.54 43.12 27.42 Both   Scaffold31376 1 60329 60401 Arg ACG tgtatggagc aatttttttt 0 0 68.85 53.16 15.69 Both Scaffold31376 13 116695 116623 Lys CTT tgtacaacaa accttctttt 0 0 82.55 61.95 20.60 Both Scaffold31376 14 44143 44071 Arg ACG ctatcacagc aatatttttg 0 0 70.30 55.68 14.62 Both Scaffold31376 15 43115 43043 Arg ACG ttatcgcagc aatttttcac 0 0 68.85 53.16 15.69 Both Scaffold31376 16 42768 42696 Arg ACG atatctcagc aatttttttg 0 0 70.30 55.68 14.62 Both Scaffold31376 17 41713 41641 Arg ACG ctatcgcagc aatttttctc 0 0 68.85 53.16 15.69 Both Scaffold31376 18 41369 41297 Arg ACG atatctcagt aattttttcc 0 0 62.54 54.22 8.32 Both   Scaffold31377 9 207150 207079 Gln CTG caacaagcca tacctttact 0 0 64.55 40.12 24.43 Both   Scaffold31378 4 194425 194353 Arg ACG ctctcacagc aatatttttg 0 0 64.80 50.18 14.62 Both   Scaffold31385 3 5403 5332 Gln CTG ttgcaagcca tatcttttgc 0 0 63.75 39.32 24.43 Both   Scaffold31405 1 2445 2515 Ile TAT aagctcggaa ttgggttttt 0 0 67.39 45.12 22.27 Both   Scaffold32417 1 30351 30422 Gly TCC ctcgtgtaaa catgtatatt 0 0 71.86 51.67 20.19 Both Scaffold32417 2 27625 27554 Gly TCC attgtgtaaa catgtaactt 0 0 71.86 51.67 20.19 Both Scaffold32417 3 19930 19859 Gly TCC ttcgtgtaaa catatatttt 0 0 71.86 51.67 20.19 Both   Scaffold33308 1 109503 109432 Ala TGC ggtcaggcaa gatccatatt 0 0 73.77 47.97 25.80 Both   Scaffold34024 7 559 478 Ser GCT gcgcatatca tcagattttt 0 0 85.34 57.77 27.57 Both   Scaffold34028 4 176106 176177 Glu CTC aaacgtgtaa aatagttctt 0 0 77.33 52.65 24.68 Both Scaffold34028 5 177715 177786 Glu CTC agatatgtaa gattctcttt 0 0 77.33 52.65 24.68 Both   Scaffold34029 2 63171 63099 Arg ACG aaattatatt aattttttgc 0 0 66.72 53.56 13.16 Both   Scaffold34039 1 171949 171869 Gly CCC tcgtcacgaa attttttgca 0 0 67.04 40.01 27.03 Both   Scaffold34693 1 510553 510625 Thr AGT tgacgtgagc ttttgtgtat 0 0 74.81 54.23 20.58 Both   Scaffold34695 5 20758 20686 Thr AGT tcactcgtgc aaaatctttt 0 0 74.81 54.23 20.58 Both   Scaffold34712 1 19456 19527 Ala TGC aacacgtcaa caagaccgct 0 0 76.61 51.27 25.34 Both Scaffold34712 2 20537 20608 Ala TGC catcagtcaa taaggtgttg 0 0 76.61 51.27 25.34 Both Scaffold34712 3 21059 21130 Ala TGC tacaactcaa taagcctttt 0 0 76.61 51.27 25.34 Both Scaffold34712 4 22256 22327 Ala TGC tttcagttaa gaccattatt 0 0 72.02 46.84 25.18 Both Scaffold34712 5 24442 24513 Ala TGC aaccactcaa taagagtttt 0 0 72.02 46.84 25.18 Both   Scaffold35413 4 163061 162990 Gln CTG acatcaagtt ctctttgtag 0 0 57.67 41.90 15.77 Eufind Scaffold35413 5 162412 162341 Gln CTG acataaagac cttacttttt 0 0 68.53 49.89 18.64 Both   Scaffold35415 4 195379 195450 Cys GCA ttgttgtggt agtcaacatt 0 0 75.38 57.16 18.22 Both Scaffold35415 6 295334 295408 Undet ??? tgcctgaata aaagactcga 0 0 56.20 36.80 19.40 Eufind   Scaffold36367 4 364054 364125 Pro AGG gaacagataa cccacgcttc 0 0 69.51 50.71 18.80 Both Scaffold36367 5 365828 365899 Pro AGG aaacagataa cacgcgattt 0 0 69.51 50.71 18.80 Both Scaffold36367 6 409324 409253 Pro TGG ctgcagttga cgcggattca 0 0 64.73 41.60 23.13 Both Scaffold36367 8 406931 406860 Pro TGG ctctaagcaa cgtggagtca 0 0 71.64 48.51 23.13 Both Scaffold36367 9 405686 405615 Pro AGG aaacatctaa cacgtaattt 0 0 68.06 48.19 19.87 Both   Scaffold36373 2 3038 3110 Arg CCT ttcatcatct aatggagact 0 0 66.41 50.08 16.33 Both   Scaffold36382 1 67520 67591 Ala CGC atgcataggc gatgaaaatg 0 0 70.03 44.39 25.64 Both Scaffold36382 2 68376 68447 Ala CGC ctgtacacgc gataaacaaa 0 0 70.03 44.39 25.64 Both Scaffold36382 4 73945 73874 Ala CGC ctgtacaccc gataaacaaa 0 0 57.71 38.35 19.36 Eufind   Scaffold36465 1 60 132 Lys TTT ataacacgca caacgtccag 0 0 78.76 55.38 23.38 Both Scaffold36465 2 559 631 Lys TTT ttcatacgca tagtccttac 0 0 73.96 58.62 15.34 Both Scaffold36465 3 865 937 Lys TTT tatccataca atggccaaat 0 0 78.76 55.38 23.38 Both Scaffold36465 4 2864 2936 Lys TTT tattatgtga atgtctacct 0 0 80.08 55.38 24.70 Both Scaffold36465 6 3699 3771 Lys TTT cgtatgcgca attacgttga 0 0 72.51 53.64 18.87 Both   Scaffold37242 2 34845 34917 Thr AGT gtgcgtgtgc ttttatcaat 0 0 78.73 58.15 20.58 Both Scaffold37242 3 37145 37217 Thr AGT ctgcgtgaac tttttttaaa 0 0 78.73 58.15 20.58 Both Scaffold37242 4 37599 37671 Thr AGT gtccgtgaac tttttagggg 0 0 70.85 50.28 20.57 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str Scaffold37243 6 46581 46511 Gly CCC tacgtcataa ctcattttgg 0 0 76.75 49.56 27.19 Both   Scaffold37353 2 1180 1099 Ser AGA aataaatcat tcaagttctt 0 0 74.09 43.64 30.45 Both   Scaffold37399 3 225 154 His GTG ttgtggtgaa ggggccattt 0 0 75.54 56.89 18.65 Both   Scaffold38238 1 186984 186913 Cys GCA gtatgtaaat gtcatatttt 0 0 77.38 59.62 17.76 Both   Scaffold38383 3 1245 1174 Ala TGC cgaaaggcaa aatccacatt 0 0 73.77 47.97 25.80 Both   Scaffold40009 8 118556 118485 Ala CGC atatattggc gatggaaatg 0 0 70.03 44.39 25.64 Both   Scaffold40060 1 1547 1619 Val TAC cggtgtgaat ttatttttca 0 0 76.83 50.38 26.45 Both   Scaffold40452 1 195211 195286 Lys TTT gtttaccgaa taggaattat 0 0 55.04 33.82 21.22 Eufind   Scaffold40458 1 49160 49241 Ser CGA tggcgggaaa ataacatttt 0 0 92.77 63.79 28.98 Both   Scaffold40460 1 8559 8487 Met CAT atgctcagcg tgctgctcaa 0 0 74.61 55.57 19.04 Both   Scaffold40475 1 9356 9428 Lys CTT tggcatgcaa tacatttttt 0 0 82.55 61.95 20.60 Both Scaffold40475 2 15539 15611 Lys CTT tgtcatgcaa tacatttttt 0 0 82.55 61.95 20.60 Both Scaffold40475 3 18392 18463 His GTG cgtgtggcaa ttttttgtct 0 0 69.59 44.88 24.71 Both Scaffold40475 5 20415 20486 His GTG gacacaggaa ttttttttca 0 0 69.59 44.88 24.71 Both   Scaffold40525 2 11916 11988 Ala AGC tatgtgcttc agttgaacgc 0 0 59.28 39.01 20.27 Both   Scaffold40606 1 2369 2457 Tyr GTA cggacatcaa atggttcctt 2406 2421 75.82 48.45 27.37 Both Scaffold40606 2 2967 3055 Tyr GTA cggataggaa gttggtttac 3004 3019 77.44 50.07 27.37 Both Scaffold40606 3 3402 3490 Tyr GTA ttgatatcaa atggttgctt 3439 3454 75.39 48.02 27.37 Both Scaffold40606 4 4616 4703 Tyr GTA cggacttcaa gtggtcaacc 4652 4667 47.43 25.36 22.07 Both Scaffold40606 5 5058 5146 Tyr GTA gcgacatcaa gtggttgttc 5095 5110 76.80 49.43 27.37 Both Scaffold40606 6 8445 8533 Tyr GTA cggtcaccga gtggttgctt 8482 8497 76.66 49.29 27.37 Both Scaffold40606 7 8939 9027 Tyr GTA catctaccga gtggttgctt 8976 8991 76.30 48.93 27.37 Both Scaffold40606 8 9484 9572 Tyr GTA caactaccga atggttgctt 9521 9536 75.35 47.98 27.37 Both Scaffold40606 9 9995 10083 Tyr GTA catctaccga gtggttcctt 10032 10047 76.31 48.94 27.37 Both Scaffold40606 10 10523 10611 Tyr GTA cagctcccga gaggttcctt 10560 10574 65.80 39.16 26.64 Both Scaffold40606 11 10998 11086 Tyr GTA attaaattga gaggttcctt 11035 11050 76.17 48.80 27.37 Both Scaffold40606 12 11690 11778 Tyr GTA cggacatgaa gtggttgctc 11727 11742 75.06 47.69 27.37 Both Scaffold40606 13 12629 12717 Tyr GTA cagacatgaa ggtggttcac 12666 12681 75.06 47.69 27.37 Both   Scaffold41615 6 116195 116122 Asn GTT agttacagtt aacattaatt 0 0 82.89 59.62 23.27 Both   Scaffold41618 2 53195 53122 Asn GTT gttctatcta gtatattttt 0 0 78.57 54.95 23.62 Both Scaffold41618 3 52796 52723 Asn GTT gatctatcta gtcatttttt 0 0 78.57 54.95 23.62 Both Scaffold41618 4 52115 52042 Asn GTT gctttatcta nnnnnnnnnn 0 0 67.86 44.31 23.55 Both   Scaffold41623 1 369320 369392 Met CAT tcaatccgca ggttgctatg 0 0 66.67 52.49 14.18 Both   Scaffold42457 1 30038 30119 Ser TGA taatagtaga tgttctggtt 0 0 83.98 52.74 31.24 Both Scaffold42457 2 30368 30449 Ser TGA tttacgtaga tgatttagtc 0 0 65.53 35.29 30.24 Both   Scaffold42471 1 84556 84637 Leu AAG tataagtaga ccattttgtt 0 0 55.08 36.21 18.87 Eufind   Scaffold42484 1 1273 1345 Arg ACG gcggcagggc aattttttgt 0 0 68.85 53.16 15.69 Both   Scaffold4298 1 314016 314088 Ala AGC taccagctgc aagatgtaac 0 0 63.58 40.32 23.26 Both Scaffold4298 2 331523 331595 Ala AGC ttataacatc actgtgactt 0 0 63.58 40.32 23.26 Both Scaffold4298 3 332986 333058 Ala AGC agtcaacatc actgtgactt 0 0 63.58 40.32 23.26 Both   Scaffold4309 1 95153 95224 Glu CTC aatcgtccaa tgaagtcttt 0 0 77.33 52.65 24.68 Both   Scaffold43323 4 283663 283591 Met CAT tttatcagca tactgctcag 0 0 74.61 55.57 19.04 Both   Scaffold44501 3 251808 251879 Glu CTC gtgtgtgttc catttttatt 0 0 78.17 53.49 24.68 Both Scaffold44501 4 268910 268981 Glu CTC gtacgtaagc cgcaattcct 0 0 78.17 53.49 24.68 Both Scaffold44501 5 269222 269293 Glu CTC gctcgtgagc catctttttg 0 0 71.50 52.97 18.53 Both Scaffold44501 7 251259 251188 Glu CTC tgacagtagc caccattttt 0 0 78.17 53.49 24.68 Both Scaffold44501 10 228004 227933 Glu CTC atttcacatg catctccttt 0 0 73.14 47.00 26.14 Both   Scaffold44561 2 65086 65157 Ala TGC cgaaagtcaa gatcttcatt 0 0 73.54 47.74 25.80 Both Scaffold44561 4 68438 68367 Ala TGC ccaactggga gaacctcatt 0 0 69.19 43.55 25.64 Both Scaffold44561 5 67708 67637 Ala TGC tatagggcaa gaactacatt 0 0 73.77 47.97 25.80 Both Scaffold44561 6 66993 66922 Ala TGC tatagggcaa gacccacatt 0 0 66.34 44.15 22.19 Both   Scaffold45206 1 12171 12243 Val TAC ttgcatgaat ctctcttttg 0 0 74.23 58.98 15.25 Both   Scaffold45214 1 60488 60559 Pro AGG catgagtcaa cacgtaattc 0 0 69.51 50.71 18.80 Both   Scaffold46046 3 377217 377289 Glu TTC gacatggcaa accttcattt 0 0 77.52 53.39 24.13 Both Scaffold46046 4 378123 378194 Glu TTC gacatggcga actttcatta 0 0 79.19 55.06 24.13 Both   Scaffold46053 4 163037 162966 Gly TCC tttccatgaa actttttttt 0 0 71.94 51.75 20.19 Both   Scaffold46093 1 29965 30037 Lys TTT accaactgaa agagtatact 0 0 79.75 64.02 15.73 Both   Scaffold46120 1 3424 3352 Lys TTT gtcgcacgca atgtcttcct 0 0 76.64 53.25 23.39 Both Scaffold46120 2 3210 3138 Lys TTT aacacatgca tcaacgttac 0 0 79.61 57.62 21.99 Both   Scaffold46126 1 11916 11846 Gly GCC aaacatcgaa tattttcttc 0 0 80.07 61.09 18.98 Both   Scaffold46729 2 305875 305955 Leu TAG catacggcaa agattttttt 0 0 55.53 33.65 21.88 Both Scaffold46729 9 560650 560578 Val CAC aaagcatcgg atttttagcg 0 0 86.83 59.77 27.06 Both Scaffold46729 11 476080 476008 Val CAC gtgacatgtg agtttttgtt 0 0 79.67 54.14 25.53 Both Scaffold46729 12 475081 475009 Val CAC attatatcgg acttttcttg 0 0 85.36 58.34 27.02 Both Scaffold46729 14 473022 472950 Val CAC ttaatatcgg atttttacct 0 0 86.83 59.77 27.06 Both Scaffold46729 15 468526 468454 Val CAC tcattatatc attttttcct 0 0 60.20 45.45 14.75 Both Scaffold46729 16 468205 468133 Val CAC atcatatcgg atttttttct 0 0 79.86 54.51 25.35 Both Scaffold46729 17 467899 467827 Val CAC atcatatcgg acttttcttt 0 0 84.20 58.84 25.36 Both Scaffold46729 18 466902 466830 Val CAC ggaacgtctg atttttttta 0 0 84.94 59.34 25.60 Both Scaffold46729 21 396490 396418 Val CAC agcatgtcag attttcttga 0 0 84.94 59.34 25.60 Both   Scaffold46734 1 49043 49115 Arg TCG atacaacctt tggcatattt 0 0 70.64 53.54 17.10 Both Scaffold46734 2 64482 64554 Thr AGT gtatgtgtgc ttttatcaat 0 0 78.73 58.15 20.58 Both Scaffold46734 3 72955 73027 Thr AGT gtgcatgtgc ttttatcaat 0 0 65.59 50.17 15.42 Both Scaffold46734 4 131448 131520 Thr AGT cattgtgtgc cttatgtggt 0 0 78.73 58.15 20.58 Both Scaffold46734 5 90657 90585 Thr AGT taacatgtgc ttttgtaata 0 0 78.73 58.15 20.58 Both Scaffold46734 6 89869 89797 Thr AGT tatcgtgtgc ttttggtggt 0 0 78.73 58.15 20.58 Both Scaffold46734 7 73645 73573 Thr AGT aaacatgtgc ttttatcaat 0 0 78.73 58.15 20.58 Both Scaffold46734 8 72343 72272 Thr TGT gtatgtgtgc ttttatcctt 0 0 72.48 51.90 20.58 Both Scaffold46734 9 66912 66840 Thr AGT gtatgtgtgc tttcatcctt 0 0 78.58 58.25 20.33 Both   Scaffold46735 2 136022 136092 Arg TCT ttactgacca ttttgcaacc 0 0 44.66 32.95 11.71 Both   Scaffold46863 1 6755 6684 Cys GCA ttgttatggt aatcaacatt 0 0 77.38 59.62 17.76 Both Scaffold46863 3 4219 4148 Cys GCA ttgttgtggt agtcaacatt 0 0 75.38 57.16 18.22 Both   Scaffold47462 1 92909 92979 Gly GCC ataacgtgaa agtttttttc 0 0 75.42 55.38 20.04 Both Scaffold47462 2 660432 660503 Glu TTC tacacgtcaa gcaatcattt 0 0 79.19 55.06 24.13 Both Scaffold47462 3 661899 661970 Glu TTC gacatggcaa atcttcatta 0 0 72.08 53.51 18.57 Both Scaffold47462 4 672008 672079 Glu TTC gacatggcaa accttcatta 0 0 79.19 55.06 24.13 Both Scaffold47462 5 672745 672816 Glu TTC gacatggcaa accttcatta 0 0 79.19 55.06 24.13 Both Scaffold47462 6 673527 673598 Glu TTC gacatggcaa accgacatta 0 0 79.19 55.06 24.13 Both Scaffold47462 7 676000 676071 Glu TTC gacatggcaa accgacatta 0 0 79.19 55.06 24.13 Both   Scaffold47463 1 82160 82231 Thr TGT atttgcctaa taaattggta 0 0 77.61 53.12 24.49 Both   Scaffold47475 3 87102 87172 Gly GCC ctttcgtgaa agtttttttt 0 0 80.07 61.09 18.98 Both   Scaffold47512 2 6079 6009 Gly GCC gagcgtgaaa atttcttttg 0 0 76.88 57.90 18.98 Both Scaffold47512 4 3800 3730 Gly GCC gaacatgagc agtacttttt 0 0 80.07 61.09 18.98 Both Scaffold47512 5 3061 2991 Gly GCC gaatgtgagc agttcttttt 0 0 80.07 61.09 18.98 Both Scaffold47512 6 2407 2337 Gly GCC gaacatgagc agtacttttt 0 0 80.07 61.09 18.98 Both Scaffold47512 7 1562 1492 Gly GCC gaacgtgagc atttcctttt 0 0 80.07 61.09 18.98 Both Scaffold47512 8 913 843 Gly GCC gaatgtgagc agtacttttt 0 0 80.07 61.09 18.98 Both Scaffold47512 9 285 215 Gly GCC taatgtgagc ggttattttt 0 0 80.07 61.09 18.98 Both   Scaffold48153 1 234460 234532 Thr AGT accatcgagc tttgtcggtc 0 0 67.05 47.12 19.93 Both Scaffold48153 2 235517 235589 Thr AGT actcgtatat tttgtcggtc 0 0 76.19 58.37 17.82 Both Scaffold48153 3 238855 238927 Thr AGT tgcatcgagc tttgtcagtt 0 0 74.81 54.23 20.58 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str Scaffold48984 1 33958 34030 Lys CTT ttgccgcaca cacaattttt 0 0 82.55 61.95 20.60 Both Scaffold48984 2 34477 34549 Lys CTT tacaagcaca cacattattt 0 0 82.55 61.95 20.60 Both Scaffold48984 3 35030 35102 Lys CTT tacacgcaca caccttcgtt 0 0 82.55 61.95 20.60 Both Scaffold48984 4 35797 35869 Lys CTT tacacgcaca caccttagtt 0 0 76.45 61.60 14.85 Both Scaffold48984 5 36434 36506 Lys CTT gtcacacaca cacctctgtt 0 0 77.53 59.38 18.15 Both Scaffold48984 6 36924 36996 Lys CTT atgccgcaca cacacaaatt 0 0 77.42 61.06 16.36 Both Scaffold48984 7 37881 37953 Lys CTT cctacgcaca cacccctttt 0 0 77.42 61.06 16.36 Both Scaffold48984 8 38522 38594 Lys CTT ttcactcaca caccttagtt 0 0 74.63 54.03 20.60 Both Scaffold48984 9 29476 29404 Lys CTT ctcacgcaca aacatacgtt 0 0 82.55 61.95 20.60 Both   Scaffold4908 4 99192 99120 Lys CTT ttgccgcaca cacattcgtt 0 0 82.55 61.95 20.60 Both   Scaffold49133 1 7447 7518 Trp CCA agtatgtgaa gcattcattt 0 0 70.89 55.08 15.81 Both Scaffold49133 2 8457 8528 Trp CCA agaatataag gcattcaaat 0 0 73.31 56.47 16.84 Eufind Scaffold49133 3 8915 8988 Trp CCA ctcatatgag gcattcaatt 0 0 62.90 45.90 17.00 Both Scaffold49133 4 4550 4479 Trp CCA gtgacacaag tttattttag 0 0 72.88 50.73 22.15 Both Scaffold49133 5 3828 3757 Trp CCA atatcatgta ttatttattt 0 0 77.15 55.00 22.15 Both   Scaffold4914 4 114660 114732 Lys CTT agccatcaca acctcctttt 0 0 82.55 61.95 20.60 Both Scaffold4914 5 116496 116568 Lys CTT tgacatcaca aactcctttt 0 0 82.55 61.95 20.60 Both Scaffold4914 6 117011 117083 Lys CTT tggcatcaca aacttccttt 0 0 82.55 61.95 20.60 Both Scaffold4914 7 122059 122131 Lys CTT tgacatcaca tacttatttt 0 0 82.55 61.95 20.60 Both Scaffold4914 8 163864 163936 Lys TTT gttatataaa agagtatact 0 0 79.75 64.02 15.73 Both Scaffold4914 13 121070 120998 Lys CTT tgtcatcaca atctcctttt 0 0 74.63 54.03 20.60 Both Scaffold4914 14 119810 119738 Lys CTT gtacatcaca aacttatttt 0 0 82.55 61.95 20.60 Both Scaffold4914 15 118917 118845 Lys CTT tgtcatcaca aactcctttt 0 0 76.23 56.05 20.18 Both Scaffold4914 16 115150 115078 Lys CTT agccatcaca acctcctttt 0 0 82.55 61.95 20.60 Both   Scaffold50143 15 24065 23994 Glu TTC gataggtaaa aactgaattt 0 0 79.19 55.06 24.13 Both   Scaffold50235 1 8485 8556 Cys GCA tgttacgtgt ccatattttt 0 0 63.95 54.09 9.86 Both   Scaffold50937 1 907 978 Gln CTG acatcaagtt ctctttgtag 0 0 57.67 41.90 15.77 Eufind   Scaffold50939 8 78638 78567 Pro TGG gtacagttca cgtggaatcg 0 0 64.97 45.03 19.94 Both Scaffold50939 9 77419 77348 Pro AGG gaacagttaa cactttgggt 0 0 69.51 50.71 18.80 Both Scaffold50939 10 76769 76698 Pro AGG gaacagctaa cacgtgattt 0 0 64.01 45.21 18.80 Both Scaffold50939 13 76366 76295 Pro AGG gaacagctaa cacctgattt 0 0 69.51 50.71 18.80 Both   Scaffold50941 1 129455 129536 Ser AGA ctgaagtgaa gcatatattt 0 0 78.36 56.21 22.15 Both Scaffold50941 2 134377 134458 Ser AGA ctgaagcgaa tcatatattt 0 0 86.70 55.21 31.49 Both Scaffold50941 4 132231 132150 Ser AGA accaaatcaa ttaaattatt 0 0 86.12 54.55 31.57 Both Scaffold50941 5 132052 131971 Ser AGA aacaaatcaa ttaaattatt 0 0 86.12 54.55 31.57 Both Scaffold50941 6 127302 127221 Ser AGA accaaatcaa tcaagttctt 0 0 86.12 54.55 31.57 Both Scaffold50941 7 127123 127042 Ser AGA aacaaatgaa tcaagttcta 0 0 86.12 54.55 31.57 Both Scaffold50941 8 126944 126863 Ser AGA accaaatcaa tcaagttctt 0 0 86.12 54.55 31.57 Both Scaffold50941 9 126765 126684 Ser AGA aacaaatgaa ttaaattctt 0 0 86.12 54.55 31.57 Both Scaffold50941 10 126586 126505 Ser AGA aacaaatgaa tcaaattctt 0 0 86.12 54.55 31.57 Both Scaffold50941 11 126407 126326 Ser AGA cataaatcaa tcaagttcta 0 0 86.12 54.55 31.57 Both Scaffold50941 12 126228 126147 Ser AGA accaaatcaa tcaaattctt 0 0 84.38 52.81 31.57 Both Scaffold50941 13 126049 125968 Ser AGA aacaaatgaa ttaaattctt 0 0 86.12 54.55 31.57 Both Scaffold50941 14 125870 125789 Ser AGA aacaaatgaa ttaaattctt 0 0 86.12 54.55 31.57 Both Scaffold50941 15 125689 125608 Ser AGA aacaaatcaa tcaagttctt 0 0 86.12 54.55 31.57 Both   Scaffold50943 1 31172 31100 Met CAT catcatagca tgctgctcaa 0 0 74.61 55.57 19.04 Both   Scaffold50988 1 7710 7793 Leu TAA tattatatcc aacagatatc 0 0 73.10 41.53 31.57 Both Scaffold50988 2 10394 10476 Leu TAA acatatatcc aacagatatc 0 0 71.56 39.99 31.57 Both   Scaffold51061 1 5559 5631 Lys TTT cgtcgccgaa agagtatact 0 0 79.75 64.02 15.73 Both   Scaffold51754 4 257874 257802 Ala AGC gagtgcgacc agaaattgaa 0 0 64.20 41.40 22.80 Both Scaffold51754 5 253637 253565 Ala AGC tggatgtgac agaacttttt 0 0 56.77 37.88 18.89 Both   Scaffold51758 1 28142 28214 Lys TTT acataccgaa agagtatgat 0 0 79.75 64.02 15.73 Both Scaffold51758 8 77414 77342 Lys TTT tcatatcgaa atcgtatgct 0 0 79.75 64.02 15.73 Both Scaffold51758 9 61474 61402 Lys TTT ctacatcgaa agagtatgtc 0 0 79.75 64.02 15.73 Both   Scaffold51810 2 17412 17341 Cys GCA ttgttgtggt aagtcaacat 0 0 75.38 57.16 18.22 Both   Scaffold51818 1 11880 11952 Leu CAA agtaacagca ctgctcagtt 0 0 64.14 52.94 11.20 Eufind   Scaffold52499 1 42841 42912 Gln CTG gtttataagc catttctttt 0 0 68.53 49.89 18.64 Both Scaffold52499 2 67863 67934 Gln CTG gtctgtaagt cactctcttt 0 0 68.53 49.89 18.64 Both Scaffold52499 3 67443 67372 Gln CTG gattataagc cccttatttt 0 0 68.53 49.89 18.64 Both Scaffold52499 4 67088 67017 Gln CTG gattataagc catttctttt 0 0 68.53 49.89 18.64 Both Scaffold52499 5 66736 66665 Gln CTG gtttataagc cgtttctttt 0 0 62.32 50.04 12.28 Eufind Scaffold52499 8 42372 42301 Gln CTG tataaaaagc cattttcttt 0 0 68.53 49.89 18.64 Both   Scaffold52564 1 3024 3096 Val AAC gatatgtggt cttttgcttt 0 0 79.41 50.38 29.03 Both   Scaffold52585 1 1485 1566 Ser AGA gaacaccaag agaatatttt 0 0 85.38 54.10 31.28 Both Scaffold52585 2 2775 2856 Ser AGA ccatatcaag agatattttt 0 0 85.38 54.10 31.28 Both Scaffold52585 3 4443 4524 Ser AGA taataccaag agatattttt 0 0 78.73 51.06 27.67 Both Scaffold52585 4 5265 5346 Ser AGA agatatcaag agatttttgt 0 0 85.38 54.10 31.28 Both   Scaffold53425 1 8445 8526 Ser AGA cgttaacaag agattttttt 0 0 85.38 54.10 31.28 Both   Scaffold53531 1 18983 19067 Leu CAG tgatcaacca tatactttta 0 0 64.10 35.62 28.48 Both Scaffold53531 2 20616 20698 Leu CAG tacatagtga taccttttag 0 0 77.63 47.90 29.73 Both Scaffold53531 4 21408 21490 Leu CAG tacacagtga taccttttag 0 0 77.63 47.90 29.73 Both Scaffold53531 5 16379 16297 Leu CAG gaaatagtga tatcttttag 0 0 77.63 47.90 29.73 Both   Scaffold53534 1 5042 5113 Ala TGC gtgtcagcaa ttaatcaaat 0 0 76.61 51.27 25.34 Both   Scaffold55251 1 22927 23010 Leu TAA acaaacctcc aacagagatc 0 0 73.10 41.53 31.57 Both   Scaffold55877 1 320851 320779 Lys TTT tatcgccgaa agagtatact 0 0 79.75 64.02 15.73 Both   Scaffold56603 2 139382 139453 His GTG tggcatagaa tttttgcaaa 0 0 69.59 44.88 24.71 Both   Scaffold56609 1 142419 142490 Glu CTC tggtgagtag tatctctttt 0 0 69.64 44.96 24.68 Both Scaffold56609 2 163684 163754 Gly CCC tagagaagaa tctacttttg 0 0 75.30 48.11 27.19 Both   Scaffold56613 1 77479 77551 Ile AAT gccaggaata gatccataac 0 0 70.45 46.13 24.32 Both Scaffold56613 2 78991 79063 Ile AAT gtcaggaata gatccatatc 0 0 70.45 46.13 24.32 Both Scaffold56613 5 143969 143897 Ile AAT ttcaagcatg taccctatcc 0 0 63.53 34.63 28.90 tRNAscan Scaffold56613 6 143774 143702 Ile AAT gtcgagcatg taccctaccc 0 0 71.91 42.96 28.95 Both Scaffold56613 7 143580 143508 Ile AAT ttcgagcatg taccctatcc 0 0 71.91 42.96 28.95 Both Scaffold56613 8 143385 143313 Ile AAT gtcgagcatg taccctatcc 0 0 71.91 42.96 28.95 Both Scaffold56613 9 143190 143118 Ile AAT gtcgagcatg taccccattc 0 0 73.29 44.35 28.94 Both Scaffold56613 10 142989 142917 Ile AAT ggctagcatg taccctttcc 0 0 71.91 42.96 28.95 Both Scaffold56613 11 142794 142722 Ile AAT gtcgagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 12 142599 142527 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 13 142403 142331 Ile AAT atcaagcatg taccctttcc 0 0 71.91 42.96 28.95 Both Scaffold56613 14 142208 142136 Ile AAT gtcgagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 15 142013 141941 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 16 141817 141745 Ile AAT atcgagcatg taccccattc 0 0 64.00 35.05 28.95 Both Scaffold56613 17 141621 141549 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 18 141425 141353 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 19 141229 141157 Ile AAT atcaagcatg taccctatcc 0 0 71.91 42.96 28.95 Both Scaffold56613 20 141034 140962 Ile AAT gtcgagcatg taccctaccc 0 0 71.91 42.96 28.95 Both Scaffold56613 21 140839 140767 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 22 140643 140571 Ile AAT gtcgagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 23 140245 140173 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 24 140043 139971 Ile AAT gtcgagcatg taccctatcc 0 0 71.91 42.96 28.95 Both Scaffold56613 25 139284 139212 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 26 139088 139016 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 27 138892 138820 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 28 138696 138624 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 29 138500 138428 Ile AAT atcaagcatg taccctttcc 0 0 64.92 41.56 23.36 Both Scaffold56613 30 138304 138232 Ile AAT gtcgagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 31 138108 138036 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 32 137911 137839 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 33 137715 137643 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 34 137519 137447 Ile AAT gtcgagcatg taccccattc 0 0 63.98 35.04 28.94 Both Scaffold56613 35 137323 137251 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 36 137127 137055 Ile AAT atcaagcatg taccctttcc 0 0 71.91 42.96 28.95 Both Scaffold56613 37 136932 136860 Ile AAT gtcgagcatg taccccattc 0 0 63.98 35.04 28.94 Both Scaffold56613 38 136736 136664 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 39 25831 25759 Ile AAT gccaggaata gatcctcatc 0 0 70.45 46.13 24.32 Both Scaffold56613 40 24533 24461 Ile AAT attgagcatg taccccattc 0 0 64.92 41.56 23.36 Both Scaffold56613 41 24337 24265 Ile AAT atcaagcatg taccctatcc 0 0 71.91 42.96 28.95 Both Scaffold56613 42 24142 24070 Ile AAT gtcgagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 43 23946 23874 Ile AAT atcaagcatg taccccatac 0 0 71.91 42.96 28.95 Both Scaffold56613 44 23750 23678 Ile AAT atcaagcatg taccctttcc 0 0 71.91 42.96 28.95 Both Scaffold56613 45 23555 23483 Ile AAT gtcgagcatg taccccattc 0 0 63.98 35.04 28.94 Both Scaffold56613 46 23359 23287 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 47 23163 23091 Ile AAT atcaagcatg taccctttcc 0 0 71.91 42.96 28.95 Both Scaffold56613 48 22967 22895 Ile AAT gtcgagcatg taccctatcc 0 0 71.91 42.96 28.95 Both Scaffold56613 49 22772 22700 Ile AAT gtcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 50 22576 22504 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 51 22379 22307 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 52 22184 22112 Ile AAT gtcgagcatg taccccattc 0 0 63.98 35.04 28.94 Both Scaffold56613 53 21988 21916 Ile AAT atcaagcatg taccctttcc 0 0 71.91 42.96 28.95 Both Scaffold56613 54 21793 21721 Ile AAT gtcgagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 55 21598 21526 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 56 21402 21330 Ile AAT atcaagcatg taccccattc 0 0 74.47 45.53 28.94 Both Scaffold56613 57 21206 21134 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 58 21010 20938 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 59 20814 20742 Ile AAT atcaagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 60 20618 20546 Ile AAT atcaagcatg taccctttcc 0 0 64.92 41.56 23.36 Both Scaffold56613 61 20424 20352 Ile AAT gtcgagcatg taccctatcc 0 0 71.91 42.96 28.95 Both Scaffold56613 62 20229 20157 Ile AAT gtcgagcatg taccccattc 0 0 73.29 44.35 28.94 Both Scaffold56613 63 20028 19956 Ile AAT ggctagcatg taccctatcc 0 0 71.91 42.96 28.95 Both Scaffold56613 64 19833 19761 Ile AAT gtcgagcatg taccccattc 0 0 68.28 39.34 28.94 Both Scaffold56613 65 19637 19565 Ile AAT gtcaagcatg taccctaccc 0 0 71.91 42.96 28.95 Both Scaffold56613 66 19441 19369 Ile AAT gtcgagcatg taccccattc 0 0 71.91 42.96 28.95 Both Scaffold56613 67 19239 19167 Ile AAT gtcgagcatg taccccattc 0 0 70.41 42.60 27.81 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str Scaffold57311 3 87754 87825 Met CAT tttcaagtga attatttttt 0 0 70.54 43.12 27.42 Both Scaffold57311 4 89509 89580 Met CAT tttcatgtga ataatttttt 0 0 70.54 43.12 27.42 Both Scaffold57311 5 89793 89864 Met CAT gttcaagtga aaacatgttc 0 0 70.54 43.12 27.42 Both Scaffold57311 10 82683 82612 Met CAT tttcaaggga atcatttttg 0 0 70.54 43.12 27.42 Both Scaffold57311 11 82525 82454 Met CAT tttcaagcga atcatttttg 0 0 70.54 43.12 27.42 Both Scaffold57311 12 82369 82298 Met CAT tttcaggtga atcatttttg 0 0 57.21 34.81 22.40 Eufind Scaffold57311 13 82213 82142 Met CAT tttcaagtga atcacttttg 0 0 70.54 43.12 27.42 Both Scaffold57311 14 82057 81986 Met CAT tttcaggtga atcatttttg 0 0 70.54 43.12 27.42 Both Scaffold57311 15 81899 81828 Met CAT tttcaagcga atcatttttg 0 0 56.52 34.98 21.54 Both Scaffold57311 16 81743 81672 Met CAT tttcaggtga atcatttttg 0 0 70.54 43.12 27.42 Both Scaffold57311 17 81587 81516 Met CAT tttcaggtga atcatttttg 0 0 59.41 37.34 22.07 Eufind Scaffold57311 18 81428 81357 Met CAT tttcaagtga atcatttttg 0 0 70.54 43.12 27.42 Both Scaffold57311 19 81272 81201 Met CAT tttcaagtga atcatttttg 0 0 64.43 42.89 21.54 Both Scaffold57311 20 81115 81044 Met CAT tttcaagcga atcattttgt 0 0 62.31 39.91 22.40 Eufind Scaffold57311 21 80916 80845 Met CAT tttcaaggga atttaaaaaa 0 0 62.33 35.06 27.27 Both Scaffold57311 22 80723 80652 Met CAT tctcaagtga atcattttga 0 0 64.96 42.09 22.87 Eufind   Scaffold57327 1 34537 34609 Arg ACG gtggcagggc aattttttgt 0 0 68.85 53.16 15.69 Both Scaffold57327 2 34700 34772 Arg ACG ttggcagggc aattttttgt 0 0 68.85 53.16 15.69 Both Scaffold57327 3 34863 34935 Arg ACG gtggcagggc aattttttgt 0 0 61.26 46.56 14.70 Both   Scaffold57335 2 36428 36500 Lys CTT ttgtctaaat tacatttttt 0 0 64.18 53.24 10.94 Both   Scaffold5792 4 304938 305008 Gly GCC aaacatcgaa tagtttcttt 0 0 80.07 61.09 18.98 Both   Scaffold57988 2 261397 261470 Thr AGT agtatgaagc tctttgtcag 0 0 58.20 47.24 10.96 Eufind   Scaffold58054 1 4827 4755 Thr AGT aaaatagagc tttgtcggtc 0 0 80.09 58.55 21.54 Both   Scaffold58124 1 18888 18961 Asn GTT gtataacgaa ttaatccttt 0 0 80.75 57.13 23.62 Both Scaffold58124 2 19362 19433 Gly TCC aaaagaggga atgaattttg 0 0 77.09 56.90 20.19 Both Scaffold58124 3 19728 19801 Asn GTT atataacgaa ttagtccttt 0 0 80.75 57.13 23.62 Both Scaffold58124 4 20198 20269 Gly TCC aaaagaagga atgaattttg 0 0 69.17 48.98 20.19 Both Scaffold58124 5 20573 20648 Asn GTT atataacgaa ttagtccttt 0 0 69.66 47.46 22.20 Eufind Scaffold58124 6 21047 21119 Gly TCC gaaagaggga atgaattttg 0 0 75.42 55.23 20.19 Both Scaffold58124 7 21399 21472 Asn GTT atataacgaa ttagtccttt 0 0 80.75 57.13 23.62 Both Scaffold58124 8 21636 21709 Asn GTT gtataacgaa ttagtccttt 0 0 80.75 57.13 23.62 Both Scaffold58124 9 22118 22189 Glu TTC aaaagtggga atgaattttg 0 0 63.69 46.73 16.96 Both Scaffold58124 10 22471 22544 Asn GTT atataacgaa ttagtccttt 0 0 75.63 55.97 19.66 Both Scaffold58124 11 22936 23007 Gly TCC aaaagaggga atgaattttg 0 0 77.09 56.90 20.19 Both Scaffold58124 12 23302 23375 Asn GTT gtataacgaa ttagtccctt 0 0 80.75 57.13 23.62 Both Scaffold58124 13 23777 23848 Gly TCC aaaagaggga attattttgg 0 0 77.09 56.90 20.19 Both Scaffold58124 14 24128 24201 Asn GTT atataacgaa ttactccctt 0 0 80.75 57.13 23.62 Both Scaffold58124 15 24597 24668 Gly TCC aaaagaggga attaattatg 0 0 77.09 56.90 20.19 Both Scaffold58124 16 24963 25036 Asn GTT gtataacgaa ttagtccttt 0 0 80.75 57.13 23.62 Both Scaffold58124 17 25432 25503 Gly TCC aaaagaggga atggattttg 0 0 73.00 57.40 15.60 Both Scaffold58124 18 25800 25873 Asn GTT atataacgaa ttagtccttt 0 0 80.75 57.13 23.62 Both Scaffold58124 19 26266 26337 Gly TCC aaaagaggga aataattttg 0 0 77.09 56.90 20.19 Both Scaffold58124 20 26431 26504 Asn GTT gtataacgaa ttactccttt 0 0 67.87 44.93 22.94 Eufind Scaffold58124 21 27236 27309 Asn GTT gtataacgaa actcattttt 0 0 80.75 57.13 23.62 Both Scaffold58124 22 28652 28725 Asn GTT agatatcgaa actatttttt 0 0 78.57 54.95 23.62 Both Scaffold58124 23 30155 30082 Asn GTT gcacagcgaa accataattt 0 0 78.57 54.95 23.62 Both Scaffold58124 24 28265 28192 Asn GTT attcatcgaa actatttttt 0 0 78.57 54.95 23.62 Both Scaffold58124 25 27879 27808 Gly TCC accaagtaga atggtctcgt 0 0 70.80 50.61 20.19 Both   Scaffold58787 1 46313 46383 Gly GCC gcatatgagc aatacctttt 0 0 80.07 61.09 18.98 Both   Scaffold58795 1 134693 134763 Gly CCC tacgtcataa ctcattttgg 0 0 75.30 48.11 27.19 Both   Scaffold58809 1 15496 15568 Ile GAT ggccagctaa gatgctcaat 0 0 77.73 49.46 28.27 Both   Scaffold59541 5 561862 561934 Met CAT tatttgtgca tgctactcat 0 0 74.61 55.57 19.04 Both Scaffold59541 8 810376 810459 Leu CAG tagccatcaa aaagttttta 0 0 63.49 41.53 21.96 Both   Scaffold59550 1 18221 18292 Asp GTC gtctattcct tctttaaatt 0 0 59.05 40.53 18.52 Eufind Scaffold59550 4 83640 83711 Asp GTC gaatcaagat acgcacgttt 0 0 72.81 46.24 26.57 Both Scaffold59550 5 93568 93497 Asp GTC aagccccaaa ggcttctctt 0 0 72.81 46.24 26.57 Both Scaffold59550 6 93018 92947 Asp GTC cagccatcaa ggctccactt 0 0 72.81 46.24 26.57 Both Scaffold59550 7 92497 92426 Asp GTC taaccaccaa gattcctttt 0 0 72.81 46.24 26.57 Both Scaffold59550 8 84280 84209 Asp GTC tctcgtcaat actatttttt 0 0 72.81 46.24 26.57 Both Scaffold59550 9 76142 76071 Asp GTC tatccgtcaa gccatttttt 0 0 72.81 46.24 26.57 Both Scaffold59550 10 17582 17511 Asp GTC gtcagccgat gctatacttt 0 0 72.81 46.24 26.57 Both   Scaffold59559 1 17989 17918 Gln TTG gtacatccaa cttaatttta 0 0 72.12 49.18 22.94 Both   Scaffold59601 2 14281 14353 Val TAC tgcccgagat ctttttcttt 0 0 80.76 51.95 28.81 Both   Scaffold60306 1 28419 28500 Ser GCT aacatatcca ctaggattct 0 0 85.34 57.77 27.57 Both   Scaffold60321 1 59140 59211 Trp CCA gtgacacaag tttattattt 0 0 77.15 55.00 22.15 Both Scaffold60321 2 56233 56162 Trp CCA agaatataag gcgttcacat 0 0 79.60 57.45 22.15 Both Scaffold60321 3 55067 54996 Trp CCA tgaccatgag gcattcaaat 0 0 77.15 55.00 22.15 Both Scaffold60321 4 54591 54520 Trp CCA cccatatgag tcattcacat 0 0 70.24 48.09 22.15 Both Scaffold60321 5 54152 54081 Trp CCA catatatgag gcattcaatt 0 0 77.15 55.00 22.15 Both Scaffold60321 6 52457 52386 Trp CCA taaacacgaa atttctcttt 0 0 72.00 52.68 19.32 Both Scaffold60321 7 51648 51577 Trp CCA taaacacgaa atttcctttt 0 0 74.29 51.71 22.58 Both   Scaffold61337 1 508 579 Cys GCA atcaatcaaa agtttacttt 0 0 68.46 50.52 17.94 Both Scaffold61337 2 1014 943 Cys GCA gttgatgtgt tgaaatcatt 0 0 77.45 59.75 17.70 Both   Scaffold61344 1 21515 21596 Ser CGA tgtctataca attatttttg 0 0 92.16 64.04 28.12 Both   Scaffold62057 1 102253 102325 Lys TTT aggattgtaa agagtatact 0 0 79.75 64.02 15.73 Both Scaffold62057 2 321341 321412 Pro AGG cattacataa cgcgtatttt 0 0 69.51 50.71 18.80 Both   Scaffold62065 1 48902 48985 Leu TAA ctcgtcatcc atagtgtttt 0 0 73.10 41.53 31.57 Both   Scaffold62162 1 21026 21097 Gly TCC ttcgtgtaaa catatatatt 0 0 71.86 51.67 20.19 Both Scaffold62162 2 8881 8810 Gly TCC actgtgtaaa catgtaactt 0 0 71.86 51.67 20.19 Both Scaffold62162 3 4018 3947 Gly TCC atgtcgacaa atcttttatt 0 0 77.09 56.90 20.19 Both Scaffold62162 4 3015 2944 Gly TCC atcaagataa aaccttttat 0 0 69.14 50.38 18.76 Eufind Scaffold62162 5 2548 2477 Gly TCC aaaagaggga atgaattttg 0 0 77.09 56.90 20.19 Both Scaffold62162 6 1999 1926 Asn GTT ttgcatcgaa agattcattt 0 0 78.57 54.95 23.62 Both   Scaffold62165 1 18727 18654 Asn GTT aatcaacaaa cttgtatttt 0 0 78.57 54.95 23.62 Both   Scaffold62913 1 37574 37646 Lys TTT acataccgaa agagtatgat 0 0 71.83 56.10 15.73 Eufind Scaffold62913 3 86890 86962 Lys TTT tcatatcgaa atcgtatgct 0 0 79.75 64.02 15.73 Both   Scaffold62917 2 73686 73767 Leu AAG cgttcatcaa ataacttttg 0 0 62.45 40.57 21.88 Both   Scaffold63678 1 15272 15200 Lys TTT ctacatcgaa agagtatgtc 0 0 79.75 64.02 15.73 Both   Scaffold6422 1 126046 126118 Val TAC gtacatctga tgttttgctt 0 0 77.83 48.80 29.03 Both Scaffold6422 2 126944 127016 Val AAC agtcatctga tgtttttgta 0 0 79.41 50.38 29.03 Both Scaffold6422 3 127458 127530 Val TAC gtgcatctga ggttttgctt 0 0 77.83 48.80 29.03 Both Scaffold6422 4 127971 128043 Val AAC agtcataaga agtttttgta 0 0 79.41 50.38 29.03 Both Scaffold6422 5 128271 128343 Val TAC gtacatctga tgttttgctt 0 0 77.83 48.80 29.03 Both Scaffold6422 6 128973 129045 Val AAC gtacatctga tgttttgctt 0 0 79.41 50.38 29.03 Both Scaffold6422 7 131062 131134 Val AAC aggcatgtgg atttttttgt 0 0 79.41 50.38 29.03 Both Scaffold6422 8 135663 135735 Val CAC gtataacgag tttttgtttt 0 0 72.08 44.52 27.56 Both Scaffold6422 9 135959 136031 Val AAC tgataactga agatcatttt 0 0 79.41 50.38 29.03 Both Scaffold6422 10 148857 148929 Val AAC tatcatctga attttttttg 0 0 79.41 50.38 29.03 Both   Scaffold64447 3 196869 196941 Val AAC tggtatccaa ttcttttttc 0 0 79.41 50.38 29.03 Both Scaffold64447 4 197961 198033 Val AAC tggcatccaa ttttttttgt 0 0 79.41 50.38 29.03 Both Scaffold64447 5 198953 199025 Val AAC tggtatccag ttcttttttc 0 0 79.41 50.38 29.03 Both Scaffold64447 6 199423 199495 Val AAC tggtatccaa tcttttttca 0 0 79.41 50.38 29.03 Both Scaffold64447 7 199967 200039 Val AAC tggcatccaa ttcttttttt 0 0 79.41 50.38 29.03 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str Scaffold64456 2 98971 98899 Lys TTT tagcaatgaa agagtagact 0 0 79.75 64.02 15.73 Both   Scaffold65149 1 71075 71147 Lys TTT aaatgtcgaa agagtatact 0 0 79.75 64.02 15.73 Both   Scaffold65150 1 147931 148003 Lys TTT atttaccgaa aaagtagact 0 0 80.22 64.49 15.73 Both Scaffold65150 3 134736 134665 Glu CTC catatggaaa catctcaaat 0 0 64.28 43.76 20.52 Both   Scaffold65153 2 158754 158682 Thr AGT gtccaagggt tttttaatct 0 0 78.73 58.15 20.58 Both Scaffold65153 3 158064 157992 Thr AGT gctcaagagc cttttaatct 0 0 78.73 58.15 20.58 Both   Scaffold65873 1 151461 151542 Ser GCT tatatattca acaagtattc 0 0 85.34 57.77 27.57 Both Scaffold65873 4 144640 144568 Lys TTT cattacgtaa agagtatacc 0 0 79.75 64.02 15.73 Both   Scaffold65879 3 121167 121237 Gly GCC ctttcgtgaa agtttttttt 0 0 70.55 51.99 18.56 Both Scaffold65879 7 113179 113109 Gly GCC tttccgtgaa agtttttttt 0 0 76.88 57.90 18.98 Both   Scaffold65880 4 147656 147727 Thr TGT gtttgcctaa taaattgcta 0 0 73.69 49.20 24.49 Both Scaffold65880 5 147980 148051 Thr TGT gtttgcctaa taaattgcta 0 0 73.69 49.20 24.49 Both Scaffold65880 6 148304 148375 Thr TGT gtttgcctaa taaattgcta 0 0 73.69 49.20 24.49 Both Scaffold65880 7 148628 148699 Thr TGT gtttgcctaa taaattgcta 0 0 73.69 49.20 24.49 Both Scaffold65880 8 148952 149023 Thr TGT gtttgcctaa taaattgcta 0 0 73.69 49.20 24.49 Both Scaffold65880 9 149276 149347 Thr TGT gtttgcctaa taaattggta 0 0 73.69 49.20 24.49 Both Scaffold65880 10 149569 149640 Thr TGT gtttgcctaa taaattggtt 0 0 69.70 45.21 24.49 Both Scaffold65880 11 149890 149961 Thr TGT gtttgcctaa taaattggta 0 0 77.61 53.12 24.49 Both Scaffold65880 12 150239 150310 Thr TGT gtttgcctaa taaattggca 0 0 77.61 53.12 24.49 Both Scaffold65880 13 150545 150616 Thr TGT gtttgcctaa taaattggta 0 0 73.69 49.20 24.49 Both Scaffold65880 14 151204 151275 Thr TGT gtttgttcaa aaaacatgtg 0 0 77.27 51.52 25.75 Both Scaffold65880 15 151555 151626 Thr TGT accagccaaa cacctgagag 0 0 77.61 53.12 24.49 Both Scaffold65880 16 152153 152225 Thr TGT gattgccaaa taacttagag 0 0 72.20 46.86 25.34 Both Scaffold65880 17 152483 152554 Thr TGT atccgtgaaa aacataatgt 0 0 77.74 51.99 25.75 Both Scaffold65880 18 152970 153041 Thr TGT ttctgtcgaa caagattccc 0 0 77.27 51.52 25.75 Both   Scaffold66810 1 1551 1479 Lys CTT tgtcagcgaa aacatctttt 0 0 82.55 61.95 20.60 Both   Scaffold66823 1 31392 31320 Arg CCT ttttacatgt agcattttgc 0 0 66.41 50.08 16.33 Both Scaffold66823 2 13645 13573 Arg CCT tacgacatgt agctttgtgt 0 0 62.36 47.35 15.01 Both   Scaffold67890 14 261390 261462 Arg ACG gtggcagggc aattttttgt 0 0 68.85 53.16 15.69 Both Scaffold67890 17 224645 224573 Arg ACG gtggcagggc aattttttgt 0 0 68.85 53.16 15.69 Both Scaffold67890 18 224482 224410 Arg ACG ttggcagggc aattttttgt 0 0 68.85 53.16 15.69 Both Scaffold67890 19 224319 224247 Arg ACG gtggcagggc aattttttgt 0 0 61.26 46.56 14.70 Both   Scaffold67897 6 91294 91222 Lys CTT cattaaccaa tacattgctt 0 0 82.55 61.95 20.60 Both Scaffold67897 7 91011 90939 Lys CTT tatccaccaa taccttttat 0 0 82.55 61.95 20.60 Both Scaffold67897 8 90643 90571 Lys CTT cagtcaacta tacatttttt 0 0 82.55 61.95 20.60 Both Scaffold67897 9 90357 90285 Lys CTT cattcaccaa catcgctttt 0 0 82.55 61.95 20.60 Both   Scaffold67900 1 1585 1657 Lys TTT gtcgcacgca aagtcatatc 0 0 78.76 55.38 23.38 Both Scaffold67900 2 112151 112223 Lys TTT tgtcgatcaa acgacttagc 0 0 78.76 55.38 23.38 Both Scaffold67900 7 72994 72923 Lys TTT atattacgca tagtcctaca 0 0 68.92 49.45 19.47 Eufind Scaffold67900 8 72690 72618 Lys TTT tatccataca gtggccaatt 0 0 63.18 47.77 15.41 Both Scaffold67900 9 70942 70870 Lys TTT ttacatgtga atgtctacct 0 0 78.76 55.38 23.38 Both Scaffold67900 10 70572 70500 Lys TTT ctcatacgaa tagactatac 0 0 79.61 57.62 21.99 Both Scaffold67900 11 70084 70012 Lys TTT cgtatgcgca caacttctca 0 0 74.15 54.27 19.88 Both Scaffold67900 12 59388 59316 Lys TTT agtgtgtaaa caacttctca 0 0 78.76 55.38 23.38 Both   Scaffold67906 1 56391 56320 Glu CTC aaactgtgta cattctcttt 0 0 78.17 53.49 24.68 Both   Scaffold68432 3 17645 17573 Lys TTT aacgatggaa ttggaatgta 0 0 43.22 26.59 16.63 Both   Scaffold68467 1 5484 5412 Lys CTT tacacgcaca cacattagtt 0 0 82.55 61.95 20.60 Both Scaffold68467 2 4570 4498 Lys CTT tacacgcaca caccttagtt 0 0 82.55 61.95 20.60 Both Scaffold68467 3 3933 3861 Lys CTT gtcacacaca cacctctttt 0 0 76.41 60.56 15.85 Both Scaffold68467 4 3443 3371 Lys CTT acgccgcaca cacacaaatt 0 0 74.63 54.03 20.60 Both   Scaffold69286 1 23840 23912 Lys TTT cttaaccgaa agagtagaca 0 0 79.75 64.02 15.73 Both Scaffold69286 3 746578 746649 Glu CTC actcaagaaa gtacggtctt 0 0 77.33 52.65 24.68 Both Scaffold69286 4 748377 748448 Glu CTC tggcaagaaa gtacagcctt 0 0 77.33 52.65 24.68 Both Scaffold69286 5 752029 752100 Glu CTC ttgcaagaaa ttacagcctt 0 0 77.33 52.65 24.68 Both Scaffold69286 6 752833 752904 Glu CTC ttgcaagaaa atacagcctt 0 0 77.33 52.65 24.68 Both Scaffold69286 7 755340 755411 Glu CTC ttgcaagaaa atacggattt 0 0 77.33 52.65 24.68 Both Scaffold69286 8 759283 759354 Glu CTC acgcaagaaa ttccagattt 0 0 77.33 52.65 24.68 Both Scaffold69286 9 768415 768486 Glu CTC ttgcaagaaa gtacagactt 0 0 77.33 52.65 24.68 Both   Scaffold69298 6 93325 93244 Ser TGA tatccatgga tgatgtggtt 0 0 79.47 47.66 31.81 Eufind Scaffold69298 7 91556 91475 Ser TGA tttccatgga tgacattttt 0 0 81.89 49.60 32.29 Both   Scaffold69300 1 78081 78000 Leu AAG tataagtaga ctattttgtt 0 0 54.53 32.64 21.89 Both Scaffold69300 2 73353 73273 Leu AAG tataagtaga ccatttgttt 0 0 46.63 36.42 10.21 Both   Scaffold69317 1 28041 27971 Gly GCC aacacgtgaa agttttttgt 0 0 80.07 61.09 18.98 Both   Scaffold69361 1 8244 8173 Gln CTG cagcatgaca gaacttttgc 0 0 64.55 40.12 24.43 Both   Scaffold69888 1 89164 89245 Ser AGA tacccatcaa atatcttttt 0 0 82.75 48.02 34.73 Both Scaffold69888 9 40222 40150 Val CAC agacgtgaag ctttttatac 0 0 82.55 57.19 25.36 Both   Scaffold70599 1 203985 204057 Met CAT gacactactg taccaaagac 0 0 66.03 57.86 8.17 Eufind   Scaffold70601 3 174122 174050 Arg TCG agagaagggt ctataatttt 0 0 73.39 56.47 16.92 Both Scaffold70601 4 173947 173875 Arg TCG agagaagggt ctataatttt 0 0 73.39 56.47 16.92 Both Scaffold70601 5 173768 173696 Arg TCG agagaagggt ctataatttt 0 0 73.39 56.47 16.92 Both Scaffold70601 6 173590 173518 Arg TCG agagaaggga cattactttt 0 0 73.39 56.47 16.92 Both Scaffold70601 7 173413 173341 Arg TCG agagaagggt caataatatt 0 0 66.02 50.23 15.79 Eufind Scaffold70601 9 169432 169360 Arg TCG nnnnccgcgt ttcagttttg 0 0 66.25 53.49 12.76 Both Scaffold70601 10 169032 168960 Arg TCG attaacaaat gtcgtaacat 0 0 51.25 45.21 6.04 Both Scaffold70601 11 167226 167155 Arg TCG agagaagggt caataatttt 0 0 63.26 49.96 13.30 Both Scaffold70601 12 167050 166978 Arg TCG agagaagggt caataatttt 0 0 73.39 56.47 16.92 Both Scaffold70601 13 166873 166801 Arg TCG agagaagggt cattactttt 0 0 63.74 46.82 16.92 Both Scaffold70601 14 166693 166621 Arg TCG agagaagggt caatactttt 0 0 73.39 56.47 16.92 Both Scaffold70601 15 166514 166442 Arg TCG agagaagggt ctttaatttt 0 0 73.39 56.47 16.92 Both Scaffold70601 16 166337 166265 Arg TCG agagaagggt cattattgtt 0 0 73.39 56.47 16.92 Both Scaffold70601 17 165981 165910 Arg TCG gagaaagggt tacaaatgtt 0 0 44.09 32.99 11.10 Both Scaffold70601 18 165804 165732 Arg TCG agcaaagggt catgactttt 0 0 73.39 56.47 16.92 Both   Scaffold71265 3 380307 380388 Ser GCT aatatattca agattttttg 0 0 85.34 57.77 27.57 Both   Scaffold71269 2 103006 103077 Met CAT tttcaaggga atcatttttt 0 0 59.04 31.62 27.42 Both Scaffold71269 3 103163 103234 Met CAT tttcaagaga atcattattt 0 0 66.50 41.93 24.57 Eufind Scaffold71269 4 103321 103392 Met CAT tttcaagaga aacatttttt 0 0 70.54 43.12 27.42 Both   Scaffold71283 2 57112 57041 Gln CTG tgaacaagac cgctcttttt 0 0 63.07 51.37 11.70 Eufind Scaffold71283 3 56459 56388 Gln CTG agataaagac cgcccttttt 0 0 63.91 48.66 15.25 Eufind Scaffold71283 4 55439 55368 Gln CTG aggttaagac cgcccatttt 0 0 61.95 46.85 15.10 Both Scaffold71283 5 51098 51027 Gln CTG agattaagac cgctcttttt 0 0 68.53 49.89 18.64 Both   Scaffold71304 1 28963 28892 Pro TGG ctacatgaga cgttgaattt 0 0 71.64 48.51 23.13 Both   Scaffold7179 3 503771 503843 Lys CTT atatatcaca aactcctttt 0 0 82.55 61.95 20.60 Both   Scaffold71915 5 50931 50859 Lys TTT aattgccgaa agagtagatt 0 0 79.75 64.02 15.73 Both   Scaffold71917 1 5283 5355 Arg TCT ttcatcatcc aacagatttt 0 0 66.52 50.19 16.33 Both Scaffold71917 2 5609 5681 Arg CCT aactgcgtag aacagatgtt 0 0 62.78 49.80 12.98 Both Scaffold71917 3 5980 6052 Arg TCT ttcatcatcc aacagaattt 0 0 66.52 50.19 16.33 Both Scaffold71917 4 6523 6595 Arg CCT aactgcgtag aacagatgtt 0 0 64.36 51.43 12.93 Both Scaffold71917 6 7266 7338 Arg TCT ttcatcatcc aacagatttt 0 0 66.52 50.19 16.33 Both Scaffold71917 7 7777 7849 Arg CCT aactgcgtag aacagatgtt 0 0 53.77 48.26 5.51 Both Scaffold71917 8 8148 8220 Arg TCT ttcagcatcc aacagatttt 0 0 59.13 46.18 12.95 Both Scaffold71917 9 22153 22081 Arg TCG tctcttatgc tcgaacacca 0 0 71.13 54.20 16.93 Both Scaffold71917 11 4460 4388 Arg TCT ttcatcatcc aacagatttt 0 0 59.13 46.18 12.95 Both Scaffold71917 12 3416 3344 Arg TCT aactccgtgg aacagatttt 0 0 66.52 50.19 16.33 Both Scaffold71917 13 2899 2827 Arg CCT atctttgtgg aacagatttt 0 0 66.41 50.08 16.33 Both Scaffold71917 14 2525 2453 Arg TCT ttcatcatcc aacagatttt 0 0 66.52 50.19 16.33 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str Scaffold7207 1 2483 2554 Gly TCC gtaatatgaa acgttttttg 0 0 71.94 51.75 20.19 Both   Scaffold7254 1 8090 8163 Met CAT agaagaagcc accaaagact 0 0 65.92 54.62 11.30 Eufind   Scaffold72701 4 239883 239812 His GTG aatcatgcaa tttttattct 0 0 66.36 45.36 21.00 Both   Scaffold72735 1 1919 2000 Ser GCT tacatattca atatttttaa 0 0 77.59 54.57 23.02 Both   Scaffold73338 5 225010 224929 Ser GCT aatatattca ctaagattct 0 0 85.34 57.77 27.57 Both   Scaffold73353 1 30181 30110 Trp CCA ccaacaggaa acatgatttt 0 0 73.05 50.91 22.14 Both   Scaffold74151 2 252649 252721 Thr AGT ttacatgtac tttttaattt 0 0 78.73 58.15 20.58 Both   Scaffold74160 1 70074 70145 Met CAT aaatatgtga atttttttta 0 0 70.54 43.12 27.42 Both Scaffold74160 2 70673 70744 Met CAT atcgtatgca aacacttttg 0 0 70.54 43.12 27.42 Both Scaffold74160 3 71519 71590 Met CAT tttgcagaga agattttttg 0 0 70.54 43.12 27.42 Both Scaffold74160 4 72183 72254 Met CAT aacccagaga ttaaacggtt 0 0 70.54 43.12 27.42 Both Scaffold74160 5 72802 72873 Met CAT tttacagaga acattttatt 0 0 64.64 40.38 24.26 Eufind Scaffold74160 6 73393 73464 Met CAT cttatataga aagatttttt 0 0 70.54 43.12 27.42 Both Scaffold74160 7 73919 73990 Met CAT cttatagaga aagatttttt 0 0 70.54 43.12 27.42 Both Scaffold74160 8 74822 74893 Met CAT gtctcatgta aaacttttgt 0 0 70.54 43.12 27.42 Both Scaffold74160 9 75594 75665 Met CAT ttcgcagaca attttttttt 0 0 70.54 43.12 27.42 Both Scaffold74160 10 76358 76429 Met CAT tttacagaga acatttttgt 0 0 62.96 40.88 22.08 Both Scaffold74160 11 77052 77123 Met CAT attatagaga acattttatt 0 0 70.54 43.12 27.42 Both Scaffold74160 12 77640 77711 Met CAT cttatagaga aagatttttt 0 0 70.54 43.12 27.42 Both Scaffold74160 13 78243 78314 Met CAT gtctcatgta aaacttttgt 0 0 68.37 42.95 25.42 Both Scaffold74160 14 79016 79087 Met CAT tttgcagaca acatttttgt 0 0 70.54 43.12 27.42 Both Scaffold74160 15 79682 79753 Met CAT tttacagaga atatttttgt 0 0 70.54 43.12 27.42 Both Scaffold74160 16 80405 80476 Met CAT attatagaga attttttttt 0 0 70.54 43.12 27.42 Both Scaffold74160 17 81070 81141 Met CAT tttgcaggca aacgttttcg 0 0 70.54 43.12 27.42 Both Scaffold74160 18 81736 81807 Met CAT tttacagaca atatttttgt 0 0 70.54 43.12 27.42 Both Scaffold74160 19 82373 82444 Met CAT cccatatgga acatgttttt 0 0 65.64 43.12 22.52 Eufind Scaffold74160 20 83016 83087 Met CAT acctgtcaac atattttttt 0 0 70.54 43.12 27.42 Both Scaffold74160 21 83672 83743 Met CAT atctatcatc atattttttt 0 0 70.54 43.12 27.42 Both Scaffold74160 24 85100 85171 Met CAT tgtaatgtag aaatcttttt 0 0 56.86 42.48 14.38 Eufind Scaffold74160 26 85971 86042 Met CAT ttgccatgaa ataacggtta 0 0 65.80 41.64 24.16 Both   Scaffold74171 1 51846 51774 Lys CTT aattgtgcaa aaccttttcc 0 0 79.78 60.50 19.28 Both   Scaffold75016 1 12754 12681 Asn GTT gcacagcgaa accataattt 0 0 78.57 54.95 23.62 Both   Scaffold76965 2 64550 64622 Lys TTT tatcgccgaa agagtcgatt 0 0 79.75 64.02 15.73 Both Scaffold76965 5 158134 158206 Met CAT tagtacagca ctgctcagtt 0 0 74.61 55.57 19.04 Both Scaffold76965 6 160165 160237 Met CAT tagtacagca ctgctcagtt 0 0 74.61 55.57 19.04 Both Scaffold76965 10 139393 139321 Lys TTT ttacgacgaa agagtagatt 0 0 78.52 64.15 14.37 Both Scaffold76965 11 98671 98599 Lys CTT ctgtatatct tccttttttt 0 0 82.55 61.95 20.60 Both Scaffold76965 13 59266 59194 Lys TTT ttacgacgaa agagtatatt 0 0 79.75 64.02 15.73 Both   Scaffold76967 4 7885 7776 Ile TAT aaattaatcc tatgtttttc 7847 7812 59.59 33.78 25.81 Both Scaffold76967 5 7518 7409 Ile TAT gaattaacta taggtttact 7480 7445 61.22 35.41 25.81 Both Scaffold76967 6 7180 7071 Ile TAT ggattaacca taggtttact 7142 7107 58.67 32.85 25.82 Both Scaffold76967 7 6842 6734 Ile TAT ggattaacta tgcggttttc 6804 6770 60.31 34.50 25.81 Both   Scaffold76968 2 35694 35765 Asp GTC gttatccaat gattactttt 0 0 71.49 44.92 26.57 Both   Scaffold76972 2 9199 9128 Ile AAT gacactactg taccaaagan 0 0 65.62 55.49 10.13 Eufind   Scaffold76976 1 94589 94660 Cys GCA aatcgtgcaa gatttaactt 0 0 77.38 59.62 17.76 Both Scaffold76976 2 95188 95259 Cys GCA aatcgtgtaa gatttaactt 0 0 77.38 59.62 17.76 Both Scaffold76976 3 95615 95686 Cys GCA aatcatgtaa gatttcaatt 0 0 77.38 59.62 17.76 Both Scaffold76976 4 96104 96175 Cys GCA tgttacgtgt ccatattttt 0 0 68.70 54.92 13.78 Both Scaffold76976 5 97888 97959 Cys GCA ttgttgtggt agtcaacatt 0 0 75.38 57.16 18.22 Both Scaffold76976 6 99246 99317 Cys GCA ttgttatggt aatcaacatt 0 0 77.38 59.62 17.76 Both Scaffold76976 7 100501 100572 Cys GCA gttgatgtgt tgaaatcatt 0 0 77.45 59.75 17.70 Both Scaffold76976 8 141095 141167 Lys TTT gtttcccgaa agagtagact 0 0 73.48 64.10 9.38 Both Scaffold76976 9 101750 101679 Cys GCA atcaatcgaa agtttacttt 0 0 65.27 47.95 17.32 Both Scaffold76976 10 101007 100936 Cys GCA atcaatcaaa agtttacttt 0 0 68.46 50.52 17.94 Both   Scaffold77003 1 4339 4268 Gln TTG cgatacccgt ctcctgttga 0 0 66.99 48.71 18.28 Both Scaffold77003 2 3342 3271 Gln TTG gaatgtactc catccacatt 0 0 66.99 48.71 18.28 Both Scaffold77003 3 1923 1852 Gln TTG gaacatccgt cttaattttt 0 0 66.38 47.97 18.41 Both   Scaffold77726 11 201243 201171 Thr AGT taacatgtac ttttgtaata 0 0 77.08 56.50 20.58 Both   Scaffold77728 11 15907 15799 Ile TAT ccgccaaccg atcggtcctt 15869 15835 56.77 32.48 24.29 Both   Scaffold77733 1 44254 44342 Tyr GTA tggacatcaa gtgttcaacc 44291 44306 77.09 50.23 26.86 Both   Scaffold77739 3 15989 15901 Tyr GTA cggacatcaa gtggttaacc 15952 15937 76.31 48.94 27.37 Both Scaffold77739 5 14985 14897 Tyr GTA cagacatcaa gtggttgctc 14948 14933 75.06 47.69 27.37 Both Scaffold77739 6 14170 14082 Tyr GTA cagacatcaa gtggttaacc 14133 14118 75.67 48.31 27.36 Both Scaffold77739 7 11612 11524 Tyr GTA tggtcaccga gtggtttctt 11575 11560 76.66 49.29 27.37 Both Scaffold77739 8 10866 10778 Tyr GTA ttgatatcaa atggttgctt 10829 10814 75.39 48.02 27.37 Both Scaffold77739 9 9652 9565 Tyr GTA cggacttcaa gtggtcaacc 9616 9601 47.43 25.36 22.07 Both Scaffold77739 10 9210 9122 Tyr GTA gcgacatgaa gtggttgctc 9173 9158 75.06 47.69 27.37 Both Scaffold77739 11 8271 8183 Tyr GTA cagacatgaa ggtggttcac 8234 8219 75.06 47.69 27.37 Both   Scaffold77853 1 198 270 Val TAC gtacatctga tgtttttgta 0 0 77.83 48.80 29.03 Both   Scaffold78408 2 163512 163583 Ala CGC atgtataggc gatcaaagtg 0 0 70.03 44.39 25.64 Both Scaffold78408 3 217412 217484 Lys TTT tgttaccgaa ggagtaccct 0 0 76.97 62.56 14.41 Both   Scaffold78409 1 138409 138481 Lys TTT gtctgccgaa agagtatact 0 0 79.75 64.02 15.73 Both   Scaffold78417 3 190406 190477 Glu TTC gacatggcaa accttcatta 0 0 79.19 55.06 24.13 Both   Scaffold78493 1 3155 3082 Asn GTT ggacatgcaa gccgttactt 0 0 78.57 54.95 23.62 Both   Scaffold80268 10 30888 30817 Glu TTC gatcaacaaa tattcatttt 0 0 79.19 55.06 24.13 Both Scaffold80268 11 30304 30233 Glu TTC gatcaacaaa gatatctttt 0 0 79.19 55.06 24.13 Both Scaffold80268 12 29880 29809 Glu TTC aattacctaa atgttatttt 0 0 79.19 55.06 24.13 Both   Scaffold80269 7 641001 641082 Ser GCT caccgtgtaa ttacaatttt 0 0 85.34 57.77 27.57 Both Scaffold80269 8 641866 641947 Ser GCT ccccacgcaa atactttttt 0 0 85.34 57.77 27.57 Both Scaffold80269 9 643365 643446 Ser GCT aattgtgaaa atactatgat 0 0 85.34 57.77 27.57 Both Scaffold80269 10 644208 644289 Ser GCT attcgtgcaa atgatttttg 0 0 85.34 57.77 27.57 Both   Scaffold80270 2 84971 85042 Pro CGG tttctctata ctattttgcc 0 0 76.96 56.81 20.15 Both Scaffold80270 3 88020 88091 Pro TGG ttgcatcaaa ttagatatct 0 0 71.64 48.51 23.13 Both Scaffold80270 4 88185 88256 Pro CGG aaacattcat agttttttgc 0 0 76.96 56.81 20.15 Both Scaffold80270 5 90090 90161 Pro AGG tgtcatcagc catgtaaaaa 0 0 69.51 50.71 18.80 Both Scaffold80270 8 375635 375708 Asn GTT aatcaacaaa cttgtatttt 0 0 78.57 54.95 23.62 Both Scaffold80270 10 88753 88682 Pro TGG gaccaagcaa cgtgtatttt 0 0 71.64 48.51 23.13 Both Scaffold80270 11 85542 85471 Pro TGG cagcaagcaa cgtgtatttt 0 0 71.64 48.51 23.13 Both   Scaffold80279 2 16552 16479 Arg TCT tgacacgaat gaatttttac 0 0 72.83 52.75 20.08 Both   Scaffold8105 7 828810 828738 Ile GAT accagctaaa taagctatct 0 0 76.28 46.94 29.34 Both   Scaffold8106 2 336138 336210 Val AAC cggcacgggg tgttttgctt 0 0 79.41 50.38 29.03 Both Scaffold8106 6 148529 148457 Arg CCG ctggctgtca aaataatgga 0 0 71.32 51.44 19.88 Both   Scaffold81714 5 187829 187757 Lys CTT acttatctaa aaccttttgc 0 0 82.55 61.95 20.60 Both Scaffold81714 6 187258 187186 Lys CTT tgtaatgtaa aaccttttac 0 0 82.55 61.95 20.60 Both Scaffold81714 7 186689 186617 Lys CTT taatgtgaaa aacttttgca 0 0 82.55 61.95 20.60 Both Scaffold81714 8 186088 186016 Lys CTT tattgtgtaa aaccttttac 0 0 82.55 61.95 20.60 Both Scaffold81714 9 185508 185436 Lys CTT tatcgtgtaa aacctttttg 0 0 83.20 62.60 20.60 Both   Scaffold81729 1 22500 22427 Asn GTT cggtcgtcaa acttgtcttt 0 0 78.57 54.95 23.62 Both   Scaffold8197 1 11631 11560 Glu CTC tcactcgaaa gctcacactt 0 0 75.88 51.20 24.68 Both Scaffold8197 2 10944 10873 Glu CTC ttgcatgaaa ggttactttt 0 0 77.33 52.65 24.68 Both Scaffold8197 3 177 106 Glu CTC ttgcaagaaa gtacagactt 0 0 77.33 52.65 24.68 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str Scaffold82263 1 7516 7597 Ser GCT aatatattca tcaaattttc 0 0 85.34 57.77 27.57 Both Scaffold82263 2 23449 23530 Ser GCT accatcatct caattatgcc 0 0 76.21 53.26 22.95 Both   Scaffold82390 1 546 474 Lys TTT cttcttatat agagtagact 0 0 79.75 64.02 15.73 Both   Scaffold826 8 344660 344579 Ser TGA tacacaagca tcatgtggtt 0 0 86.84 53.89 32.95 Both   Scaffold83199 4 132527 132418 Ile TAT tttttcatcc tacggttttc 132489 132454 60.58 34.77 25.81 Both Scaffold83199 5 132166 132057 Ile TAT gaattaacta taggtttact 132128 132093 61.22 35.41 25.81 Both Scaffold83199 6 131828 131720 Ile TAT ggattaacta tgcggttttc 131790 131756 60.31 34.50 25.81 Both   Scaffold83903 6 353531 353602 His GTG tcagaaccca tttttgaact 0 0 69.59 44.88 24.71 Both Scaffold83903 10 56974 56903 His GTG atcagtggaa tttttttttt 0 0 61.69 37.96 23.73 Both Scaffold83903 11 56563 56492 His GTG attagtggaa ttttttttct 0 0 69.59 44.88 24.71 Both Scaffold83903 12 56092 56021 His GTG attagtggaa ttttttcctt 0 0 69.59 44.88 24.71 Both   Scaffold83904 3 408931 409002 Glu CTC aacatggaaa catctcacat 0 0 77.33 52.65 24.68 Both   Scaffold83905 1 27519 27591 Ala AGC tgtgtgcttc agttgaacgc 0 0 63.58 40.32 23.26 Both   Scaffold83911 1 223783 223854 Glu CTC atatatgtga gcaaaataat 0 0 72.95 49.26 23.69 Both   Scaffold83914 1 26743 26813 Gly GCC gcatagcata ttttttttgt 0 0 64.85 52.00 12.85 Both Scaffold83914 2 26851 26921 Gly GCC tttttttcca atttttcccg 0 0 68.77 50.93 17.84 Both Scaffold83914 3 28241 28310 Gly GCC tcagtatata attttttctt 0 0 72.36 47.28 25.08 Both Scaffold83914 4 28896 28966 Gly GCC gacgtggaaa actttttcca 0 0 74.44 53.29 21.15 Both Scaffold83914 7 130115 130187 Val AAC agtcatcaga attttttgta 0 0 79.41 50.38 29.03 Both Scaffold83914 8 130411 130483 Val TAC tagcatctgg tcttttgctt 0 0 77.83 48.80 29.03 Both Scaffold83914 10 93374 93286 Tyr GTA cggacatcaa gtggtcaacc 93337 93322 75.81 48.44 27.37 Both   Scaffold84484 7 302098 302026 Thr TGT tggcatgcaa acttaatatc 0 0 78.62 52.09 26.53 Both   Scaffold84493 1 142039 141967 Arg CCT ttagatatct aaaatgggac 0 0 56.98 40.09 16.89 Both Scaffold84493 2 141177 141105 Arg CCT tagaatatct aaaaaaggcc 0 0 68.23 51.90 16.33 Both Scaffold84493 3 140709 140637 Arg CCT ttaaatatct aaaatgggac 0 0 64.91 45.08 19.83 Both Scaffold84493 4 140045 139973 Arg CCT atagatatct aaaatgggac 0 0 52.17 46.59 5.58 Both Scaffold84493 5 139423 139351 Arg CCT aagaatatct aaaatgtgcc 0 0 68.23 51.90 16.33 Both Scaffold84493 7 137363 137291 Arg CCT tagaatatct aacattggcc 0 0 68.23 51.90 16.33 Both Scaffold84493 8 136254 136174 Arg CCT ataaaatatc aaattggtca 0 0 58.94 41.68 17.26 Both Scaffold84493 9 134772 134700 Arg CCT tcagatatct aaaaattggc 0 0 68.23 51.90 16.33 Both   Scaffold84537 1 1565 1493 Lys TTT ctttgtcgaa agagtagatt 0 0 79.75 64.02 15.73 Both   Scaffold84550 1 15682 15754 Ala AGC ctgacaggaa actggatatc 0 0 63.58 40.32 23.26 Both   Scaffold85332 1 88059 88131 Met CAT aatatcagca aactgctcag 0 0 74.61 55.57 19.04 Both Scaffold85332 4 89687 89615 Met CAT attatcagca tactggtcag 0 0 74.61 55.57 19.04 Both Scaffold85332 5 88695 88623 Met CAT tagcgtagca ctgctcattt 0 0 74.61 55.57 19.04 Both Scaffold85332 7 64301 64229 Met CAT aaaaagagca tactgcacag 0 0 74.61 55.57 19.04 Both   Scaffold86110 1 90781 90853 Met CAT aaatgaggca ctgctcagct 0 0 74.61 55.57 19.04 Both   Scaffold86111 4 75886 75815 Ala CGC tgtcgtgatc caacttcttc 0 0 77.98 54.35 23.63 Both   Scaffold86113 1 146665 146736 Gln TTG tatcaggcag ctttcttttg 0 0 66.99 48.71 18.28 Both Scaffold86113 2 152432 152503 Gln TTG taacaggcag ctttcttttg 0 0 65.99 48.43 17.56 Both Scaffold86113 3 152959 153030 Gln TTG tagcaggcaa cattcttttt 0 0 66.99 48.71 18.28 Both Scaffold86113 4 153672 153743 Gln TTG cagcaggcaa ctttattttg 0 0 66.99 48.71 18.28 Both Scaffold86113 5 154390 154461 Gln TTG tatcagacaa ctttcttttg 0 0 66.99 48.71 18.28 Both   Scaffold86115 10 47322 47241 Ser TGA ttatcttgta atatattttt 0 0 84.69 59.56 25.13 Both   Scaffold86169 1 3761 3842 Leu TAG ttttgctgaa atatttcttt 0 0 65.14 43.26 21.88 Both   Scaffold86171 3 6153 6072 Ser CGA ctttcgtaga ttattttttt 0 0 84.57 53.33 31.24 Both   Scaffold86179 1 8593 8664 Pro TGG ttgcatcaaa taagatattt 0 0 71.64 48.51 23.13 Both Scaffold86179 2 8754 8825 Pro CGG caaaaatcat ttcttttgct 0 0 77.32 54.20 23.12 Both Scaffold86179 3 9316 9245 Pro TGG attcaagcaa cgtgtatttt 0 0 71.64 48.51 23.13 Both   Scaffold86182 1 16922 16850 Lys CTT agattcattt taccctcttt 0 0 70.00 53.20 16.80 Both   Scaffold86251 1 8910 8981 Asp GTC tccatccaat gattactttt 0 0 59.38 42.10 17.28 Eufind   Scaffold86257 1 6525 6453 Arg ACG gtggcagggc aattttttgt 0 0 68.85 53.16 15.69 Both Scaffold86257 2 6362 6290 Arg ACG gtggcagggc aattttttgt 0 0 68.85 53.16 15.69 Both Scaffold86257 3 6198 6126 Arg ACG gtggcagggc aattttttgt 0 0 63.26 52.13 11.13 Both Scaffold86257 4 6035 5963 Arg ACG gtggcagggc aattttttgt 0 0 68.85 53.16 15.69 Both Scaffold86257 5 5872 5800 Arg ACG gtggcagggc aattttttgt 0 0 68.85 53.16 15.69 Both Scaffold86257 6 5709 5637 Arg ACG gtggcagggc aattttttgt 0 0 68.85 53.16 15.69 Both Scaffold86257 7 5546 5474 Arg ACG gtggcagggc aattttttgt 0 0 60.92 45.24 15.68 Both Scaffold86257 9 5220 5148 Arg ACG gtggcagggc aattttttgt 0 0 58.87 49.03 9.84 Both   Scaffold87079 3 563137 563207 Gly GCC gaatgtgagc atttcctttt 0 0 80.07 61.09 18.98 Both Scaffold87079 4 603085 603155 Gly GCC taatgtgtgc agtgcttttt 0 0 80.07 61.09 18.98 Both Scaffold87079 6 586456 586386 Gly GCC gaatgtgagc atttcctttc 0 0 80.07 61.09 18.98 Both Scaffold87079 7 585858 585788 Gly GCC caatatgagc agtacttttt 0 0 71.10 56.61 14.49 Both Scaffold87079 8 585226 585156 Gly GCC tgaacttagc agttgatttt 0 0 66.75 57.52 9.23 Both Scaffold87079 9 584632 584562 Gly GCC ttccgtgagg agtacttttt 0 0 73.37 58.83 14.54 Both Scaffold87079 10 583802 583732 Gly GCC gaacgtgagc agtacttttt 0 0 76.50 61.18 15.32 Both Scaffold87079 11 582781 582711 Gly GCC gaacgtgagc atttcctttt 0 0 80.07 61.09 18.98 Both Scaffold87079 12 582134 582064 Gly GCC gaatgtgagc agtacttttt 0 0 80.07 61.09 18.98 Both Scaffold87079 13 581520 581450 Gly GCC taatgtgagc ggttattttt 0 0 71.44 53.54 17.90 Both Scaffold87079 14 581201 581131 Gly GCC gatcgtgagc agataatttt 0 0 80.07 61.09 18.98 Both Scaffold87079 15 567734 567664 Gly GCC gaacgtgagc agtacttttt 0 0 67.44 60.39 7.05 Eufind Scaffold87079 16 566057 565987 Gly GCC ccgtgtaagc agtacttttt 0 0 80.07 61.09 18.98 Both Scaffold87079 17 563946 563876 Gly GCC gatcgtgagc atttcctttt 0 0 80.07 61.09 18.98 Both Scaffold87079 18 563616 563546 Gly GCC gttcgtgagc agtacctttt 0 0 80.07 61.09 18.98 Both Scaffold87079 19 294137 294028 Ile TAT gattttaact atcagttttt 294099 294064 62.05 37.77 24.28 Both Scaffold87079 20 293426 293317 Ile TAT gagttcaaca aacggttttc 293388 293353 62.55 38.27 24.28 Both   Scaffold87792 7 59983 59902 Ser TGA agaggcggga ttatcctttt 0 0 85.70 55.83 29.87 Both   Scaffold87796 2 142843 142916 Arg TCT gaaatctgat gaattatgtt 0 0 72.83 52.75 20.08 Both   Scaffold88558 1 106894 106965 Gln CTG gcgccataat cgtctttttt 0 0 68.04 49.05 18.99 Both   Scaffold88559 1 238242 238313 Asp GTC ttccagcttc ttcttctttt 0 0 72.81 46.24 26.57 Both Scaffold88559 2 241211 241282 Asp GTC aaacatcttc atcattttta 0 0 72.81 46.24 26.57 Both Scaffold88559 3 243545 243616 Asp GTC tatcaactaa tctctggttt 0 0 72.81 46.24 26.57 Both Scaffold88559 4 244082 244153 Asp GTC catcaattat atcacgattt 0 0 72.81 46.24 26.57 Both Scaffold88559 5 246438 246509 Asp GTC agtcagttcc ctcttgattt 0 0 72.81 46.24 26.57 Both Scaffold88559 6 248134 248205 Asp GTC tatcaactat tctctgtttt 0 0 72.81 46.24 26.57 Both Scaffold88559 7 248671 248741 Asp GTC catcaattat gtcacgattt 0 0 62.29 38.46 23.83 Both Scaffold88559 8 249057 249128 Asp GTC catcaactat gtcacgattt 0 0 60.14 36.84 23.30 Both Scaffold88559 9 249293 249364 Asp GTC aatcaactat gtcacgattt 0 0 68.27 41.70 26.57 Both Scaffold88559 10 249677 249748 Asp GTC ttttcaccaa tctctgtttt 0 0 72.81 46.24 26.57 Both Scaffold88559 11 250211 250282 Asp GTC catcaactat gtcacgattt 0 0 64.89 38.32 26.57 Both Scaffold88559 12 250447 250518 Asp GTC aatcaactat tctctgtttt 0 0 72.81 46.24 26.57 Both Scaffold88559 13 250834 250905 Asp GTC ttatcaattt gtcacgattt 0 0 72.81 46.24 26.57 Both Scaffold88559 14 251222 251293 Asp GTC ttttcaccaa tctctgtttt 0 0 72.81 46.24 26.57 Both Scaffold88559 15 251753 251824 Asp GTC aatcaactat gtcacgattt 0 0 69.89 43.32 26.57 Both Scaffold88559 16 252134 252205 Asp GTC ttttcaccaa tctctgtttt 0 0 72.81 46.24 26.57 Both Scaffold88559 17 252668 252739 Asp GTC catcaactat gtcacgattt 0 0 72.81 46.24 26.57 Both Scaffold88559 18 253051 253122 Asp GTC ttttcaccaa tctctgtttt 0 0 68.83 44.43 24.40 Both Scaffold88559 19 253436 253507 Asp GTC tatcaattct gtcacgattt 0 0 72.81 46.24 26.57 Both Scaffold88559 20 253826 253897 Asp GTC ttttcaccaa tctctgtttt 0 0 67.72 46.71 21.01 Both Scaffold88559 21 254211 254282 Asp GTC tatcaattct gtcacgattt 0 0 72.81 46.24 26.57 Both Scaffold88559 22 254601 254672 Asp GTC ttttcaccaa tctnnnnnnn 0 0 61.73 39.58 22.15 Both Scaffold88559 23 257779 257850 Asp GTC catcaactat tctctgtttt 0 0 72.81 46.24 26.57 Both Scaffold88559 24 258312 258383 Asp GTC catcaactat gtcacgattt 0 0 72.81 46.24 26.57 Both Scaffold88559 25 258695 258766 Asp GTC ttttcaccaa tctctgtttt 0 0 68.83 44.43 24.40 Both Scaffold88559 26 259080 259151 Asp GTC tatcaattct gtcacgattt 0 0 72.81 46.24 26.57 Both Scaffold88559 27 259470 259541 Asp GTC ttttcaccaa tctctgtttt 0 0 67.72 46.71 21.01 Both Scaffold88559 28 259855 259926 Asp GTC tatcaattct gtcacgattt 0 0 72.81 46.24 26.57 Both Scaffold88559 29 260245 260316 Asp GTC ttttcaccaa tctctgttta 0 0 61.73 39.58 22.15 Both Scaffold88559 30 260782 260853 Asp GTC catcaactat gtcacgattt 0 0 72.81 46.24 26.57 Both Scaffold88559 31 261168 261239 Asp GTC atttcaccaa gtcacgattt 0 0 61.73 39.58 22.15 Both Scaffold88559 33 261942 262013 Asp GTC catcagttat ttcatgattt 0 0 72.81 46.24 26.57 Both Scaffold88559 34 262326 262397 Asp GTC tatcaattct ttcatgattt 0 0 72.81 46.24 26.57 Both Scaffold88559 35 262706 262777 Asp GTC tatcaactct gtcatgattt 0 0 70.14 43.58 26.56 Both Scaffold88559 36 263097 263168 Asp GTC tatcaactct ttcatgattt 0 0 72.81 46.24 26.57 Both Scaffold88559 37 263454 263525 Asp GTC tatcaattct ttcatgattt 0 0 56.61 32.05 24.56 Both Scaffold88559 38 263836 263907 Asp GTC taccaactct ctcatgattt 0 0 72.81 46.24 26.57 Both Scaffold88559 39 264213 264284 Asp GTC tgtcaactct ttcatgattt 0 0 59.27 38.24 21.03 Both Scaffold88559 40 264596 264667 Asp GTC tatcaactct gtcatgatgt 0 0 72.81 46.24 26.57 Both Scaffold88559 41 264985 265056 Asp GTC tatcaactct gtcatgtttt 0 0 60.22 38.46 21.76 Both Scaffold88559 42 265341 265412 Asp GTC taccaactct gtcatgattt 0 0 72.81 46.24 26.57 Both Scaffold88559 43 265718 265789 Asp GTC tgtcaactct ttcatgattt 0 0 59.86 38.82 21.04 Eufind Scaffold88559 44 266102 266173 Asp GTC tatcaactct gtcatgattt 0 0 63.92 37.36 26.56 Both Scaffold88559 45 266497 266568 Asp GTC tatcaactct gtcatgattt 0 0 72.81 46.24 26.57 Both Scaffold88559 46 266881 266952 Asp GTC tatcaactct atcatgattt 0 0 72.81 46.24 26.57 Both Scaffold88559 47 267263 267334 Asp GTC cttcaactct atcatgattt 0 0 72.81 46.24 26.57 Both Scaffold88559 48 257228 257157 Asp GTC ttccagcttc ttcttctttt 0 0 72.81 46.24 26.57 Both Scaffold88559 49 237695 237624 Asp GTC tatcaattct gtcatgactt 0 0 72.81 46.24 26.57 Both Scaffold88559 50 237326 237255 Asp GTC tatcaaccct gtcatgattt 0 0 72.81 46.24 26.57 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str Scaffold88599 1 15205 15133 Met CAT atcacaaccg taccaaagac 0 0 55.20 48.60 6.60 Eufind   Scaffold88617 1 14066 14138 Thr AGT tgaatcgagc tttgtgggtc 0 0 78.73 58.15 20.58 Both   Scaffold88697 2 12644 12573 Sup TTA atcaggtcaa taccaccaat 0 0 69.08 54.82 14.26 Both   Scaffold89433 11 1042912 1042983 Glu TTC tacatggcaa taacaccaat 0 0 79.19 55.06 24.13 Both   Scaffold89434 1 42659 42730 Pro TGG caccaagaga cgcggtagca 0 0 71.64 48.51 23.13 Both Scaffold89434 2 43742 43813 Pro AGG gatcaactaa cacgtaattt 0 0 69.51 50.71 18.80 Both Scaffold89434 3 44027 44098 Pro TGG gatcaagtaa cgtggaaact 0 0 71.64 48.51 23.13 Both Scaffold89434 4 45874 45945 Pro AGG gaacatctaa cacgtgattt 0 0 69.51 50.71 18.80 Both Scaffold89434 5 46155 46226 Pro TGG ttgcagatga cgtggaatct 0 0 64.99 45.47 19.52 Both Scaffold89434 6 47034 47105 Pro AGG gatcagatga cacgagattt 0 0 69.51 50.71 18.80 Both Scaffold89434 7 47950 48021 Pro TGG ctgcagttga cgtggaatct 0 0 71.64 48.51 23.13 Both Scaffold89434 8 48794 48865 Pro AGG aggcatctaa cacgtagctt 0 0 68.06 48.19 19.87 Both   Scaffold89437 1 95676 95757 Ser AGA agataccaag agaatatttt 0 0 85.38 54.10 31.28 Both Scaffold89437 2 97007 97088 Ser AGA agatatcaag agatttgttt 0 0 85.38 54.10 31.28 Both Scaffold89437 3 98343 98424 Ser AGA taatatcaag agattttttc 0 0 85.38 54.10 31.28 Both   Scaffold8991 2 413454 413383 Glu TTC gataggtaaa agctgaaatt 0 0 79.19 55.06 24.13 Both   Scaffold8994 4 274301 274230 Cys GCA tttcagcgaa tgtcaccttt 0 0 77.91 58.83 19.08 Both   Scaffold8995 4 25686 25615 Cys GCA aaatagcgaa tgtcactttt 0 0 77.91 58.83 19.08 Both Scaffold8995 5 24820 24749 Cys GCA tgatagcaac tatcactctt 0 0 69.99 50.91 19.08 Both Scaffold8995 6 19015 18944 Cys GCA atataacgaa tgtcaccttt 0 0 70.00 50.92 19.08 Both Scaffold8995 7 18476 18405 Cys GCA acatagcaac tgtcaccttt 0 0 77.91 58.83 19.08 Both Scaffold8995 8 17623 17552 Cys GCA tgacagcgaa tgtcaccttt 0 0 77.91 58.83 19.08 Both Scaffold8995 9 16783 16712 Cys GCA ttacagcaaa gcacgtattt 0 0 77.91 58.83 19.08 Both   Scaffold9010 1 16682 16753 Pro CGG attgcgttgt ctctttttac 0 0 74.61 55.58 19.03 Both   Scaffold9061 2 10981 10900 Ser TGA taatagtaga tgttctggtt 0 0 83.98 52.74 31.24 Both   Scaffold309 1 375 304 Glu CTC gtatgtgtcc cacttttatt 0 0 78.17 53.49 24.68 Both   Scaffold2924 1 788 716 Val AAC tatcatctga aatcaataaa 0 0 72.52 47.54 24.98 Both   Scaffold5745 1 145 216 Gly TCC gtaagaggga atgaatttag 0 0 58.30 46.24 12.06 Eufind Scaffold5745 2 509 582 Asn GTT atacaacgaa ttactccctt 0 0 80.75 57.13 23.62 Both Scaffold5745 3 954 1024 Glu TTC aaaagaggta atgaattttg 0 0 64.63 47.35 17.28 Eufind Scaffold5745 4 1318 1391 Asn GTT gtataacgaa ttaatcattt 0 0 68.92 45.29 23.63 Both Scaffold5745 5 1789 1860 Gly TCC aaaagaggga atgaattttg 0 0 72.79 55.59 17.20 Both Scaffold5745 6 2138 2211 Asn GTT gtataacgaa ttactctttt 0 0 80.75 57.13 23.62 Both Scaffold5745 7 2604 2675 Gly TCC aaaagaggga ataaattttg 0 0 70.18 49.99 20.19 Both Scaffold5745 8 2930 3001 Gly TCC aaaagaggga atgaattttg 0 0 75.91 58.50 17.41 Both   Scaffold6149 1 836 765 Trp CCA atatcatgta ttatttattt 0 0 77.15 55.00 22.15 Both   Scaffold6589 1 452 523 Glu CTC atgtatgtga gcaaaataat 0 0 77.33 52.65 24.68 Both   Scaffold8412 1 1796 1724 Lys CTT tgccatgcaa tacatttttt 0 0 82.55 61.95 20.60 Both   Scaffold9706 2 10464 10537 Asn GTT ttacatagtt gccttgtctt 0 0 77.15 55.89 21.26 Both   Scaffold10723 1 1205 1278 Arg TCT ttgtgccaaa gcctacattt 0 0 75.75 56.59 19.16 Both   Scaffold12615 1 312 241 His GTG tggcatagaa tttttgcaaa 0 0 69.59 44.88 24.71 Both   Scaffold13940 1 361 432 Glu TTC tacacggcaa aaacaccaat 0 0 79.19 55.06 24.13 Both   Scaffold15023 1 430 511 Ser GCT aatatattca ctatagattc 0 0 85.34 57.77 27.57 Both   Scaffold18467 1 22605 22535 Gly GCC aacacgtgaa agttttttgt 0 0 80.07 61.09 18.98 Both   Scaffold18789 1 1595 1524 Gln TTG taacatatgc ttcagttttt 0 0 69.41 44.62 24.79 Both   Scaffold19689 1 1191 1263 Lys TTT aaacgacgaa agagtatact 0 0 79.75 64.02 15.73 Both   Scaffold21942 1 110 37 Met CAT tttgcagact acaattttgt 0 0 51.49 32.22 19.27 Both   Scaffold22066 1 570 498 Lys TTT atacgccgat agagttaatc 0 0 64.18 49.45 14.73 Both   Scaffold22523 1 738 810 Lys TTT ttcatacgca tagtccttac 0 0 73.75 57.84 15.91 Both   Scaffold23661 1 135 207 Lys TTT cgtatgcgca attacgttga 0 0 72.51 53.64 18.87 Both   Scaffold24003 1 778 850 Thr AGT gaatgtgtgt tttcatcctt 0 0 78.58 58.25 20.33 Both Scaffold24003 2 2619 2547 Thr AGT gtatgtgtgc ttttatcaat 0 0 78.73 58.15 20.58 Both Scaffold24003 3 1271 1199 Thr AGT gaacatgtgc attcatccat 0 0 73.82 55.53 18.29 Both   Scaffold24936 1 1376 1305 Met CAT tttcaaggga atcatttttt 0 0 62.62 35.19 27.43 Both Scaffold24936 2 1221 1150 Met CAT tatcaaggga atcatttttg 0 0 62.85 35.43 27.42 Both Scaffold24936 3 1066 995 Met CAT tttcaagtga ataatttttt 0 0 64.64 40.38 24.26 Eufind   Scaffold25243 1 446 517 Ile TAT acatgcttac tggggatttt 0 0 71.98 60.67 11.31 Eufind   Scaffold28215 1 715 645 Ile TAT atgccaggaa aatgaagtta 0 0 59.46 36.83 22.63 Both   Scaffold28929 1 3 91 Tyr GTA     40 55 69.21 42.36 26.85 Both   Scaffold29697 1 304 375 Cys GCA tgttacgtgt ccatattttt 0 0 65.47 55.40 10.07 Both   Scaffold30154 1 660 732 Ala AGC ttataacatc aatgtgactt 0 0 63.58 40.32 23.26 Both Scaffold30154 2 1596 1668 Ala AGC cgtgaacatc actgtgattt 0 0 63.58 40.32 23.26 Both Scaffold30154 3 2618 2690 Ala AGC agataacatc actgtgactt 0 0 63.58 40.32 23.26 Both Scaffold30154 4 4068 4140 Ala AGC tgtcaacatc actgtgactt 0 0 63.58 40.32 23.26 Both   Scaffold30774 1 1076 1004 Leu TAA taatacatgt tgagacgatt 0 0 56.70 48.80 7.90 Eufind Scaffold30774 2 755 683 Leu CAA taatgatatt agttgaaggt 0 0 77.24 54.14 23.10 Both   Scaffold31350 1 375 446 Gly TCC gtaatatgaa acgttttttt 0 0 71.94 51.75 20.19 Both   Scaffold32683 1 974 902 Arg TCG cacatcgacc ctattttttt 0 0 73.39 56.47 16.92 Both   Scaffold33189 1 7865 7937 Lys TTT tgtcgatcaa acgacttagc 0 0 78.76 55.38 23.38 Both   Scaffold33194 2 19410 19339 Cys GCA aaatagcgaa tgtcactttt 0 0 77.91 58.83 19.08 Both Scaffold33194 3 18544 18473 Cys GCA tgatagcaac tatcactctt 0 0 69.99 50.91 19.08 Both Scaffold33194 4 14518 14447 Cys GCA atataacgaa tgtcaccttt 0 0 70.00 50.92 19.08 Both Scaffold33194 5 13979 13908 Cys GCA acatagcaac tgtcaccttt 0 0 77.91 58.83 19.08 Both Scaffold33194 6 13277 13206 Cys GCA tgacagcgaa tgtcaccttt 0 0 77.91 58.83 19.08 Both Scaffold33194 7 12437 12366 Cys GCA ttacagcaaa gcacgtattt 0 0 77.91 58.83 19.08 Both   Scaffold34156 1 190 261 Ile TAT acatgcttat tggggatttt 0 0 70.09 60.25 9.84 Eufind Scaffold34156 2 784 856 Phe AAA atattgtcga tcagatgatt 0 0 68.48 48.60 19.88 Both   Scaffold35027 1 220 149 Pro TGG attcaagcaa cgtgtatttt 0 0 71.64 48.51 23.13 Both   Scaffold35089 1 654 583 Asp GTC tcctctggaa ccatgttaat 0 0 65.84 44.60 21.24 Both   Scaffold37094 1 388 307 Ser AGA tcacatcaag agattttttt 0 0 85.38 54.10 31.28 Both   Scaffold38643 1 15436 15364 Arg CCT tacgacgtgt agctgtgtat 0 0 66.26 47.15 19.11 Both   Scaffold39119 1 418 489 Pro TGG aatcaagcaa cgtgtaattt 0 0 68.29 48.30 19.99 Both   Scaffold39940 1 462 532 Gly GCC tctgtatgta ttttttctcc 0 0 65.82 50.01 15.81 Eufind   Scaffold40930 1 417 346 Ala TGC aaccagtcaa aagtcttttt 0 0 76.61 51.27 25.34 Both   Scaffold41215 1 2 73 Ala TGC     0 0 76.61 51.27 25.34 Both   Scaffold42649 1 1100 1171 Gln TTG ctacatccgc ctcaatcttt 0 0 71.06 46.27 24.79 Both   Scaffold42697 1 46 117 His GTG agtcatgcaa ttttatttta 0 0 61.68 36.97 24.71 Both Scaffold42697 2 498 569 His GTG agtcatgcaa tttttttcct 0 0 69.59 44.88 24.71 Both   Scaffold45582 1 731 802 Ala CGC ctgtacacgc gataaacaaa 0 0 70.03 44.39 25.64 Both   Scaffold46029 1 794 866 Val AAC cggcacgggg tgttttgctt 0 0 79.41 50.38 29.03 Both   Scaffold48007 1 8084 8155 Gln CTG ttgcaagcca tatcttttgc 0 0 63.75 39.32 24.43 Both   Scaffold50741 1 622 551 Pro TGG ttgcatcaaa taagatatct 0 0 71.64 48.51 23.13 Both Scaffold50741 2 472 401 Pro CGG aaacatttat ttcgtttgct 0 0 73.70 50.73 22.97 Both   Scaffold50799 1 169 241 Arg CCT aactccgtgg aacacatttt 0 0 66.41 50.08 16.33 Both Scaffold50799 2 545 617 Arg TCT ttcatcatcc aacagatttt 0 0 66.52 50.19 16.33 Both   Scaffold51459 1 578 507 Pro TGG tcgcatcaaa taagatatct 0 0 71.64 48.51 23.13 Both Scaffold51459 2 414 343 Pro CGG aaacatttat ttcgtttgct 0 0 69.27 54.88 14.39 Both   Scaffold53323 1 404 475 Asp GTC atacagaact gtcatgtttt 0 0 64.89 38.32 26.57 Both Scaffold53323 2 759 830 Asp GTC catcaacttt gtcacgattt 0 0 72.81 46.24 26.57 Both Scaffold53323 3 1144 1215 Asp GTC ttttcaccaa gtcatgattt 0 0 72.81 46.24 26.57 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str Scaffold53770 1 338 419 Ser GCT gtgcatatca tcggtttttt 0 0 85.34 57.77 27.57 Both   Scaffold53959 1 10665 10737 Val TAC tttgcagtgt ctctctttta 0 0 75.41 57.39 18.02 Both   Scaffold57241 1 8140 8069 Glu TTC gacatggcaa accttcattt 0 0 79.19 55.06 24.13 Both Scaffold57241 2 7235 7164 Glu TTC gacatggcga actttcatta 0 0 79.19 55.06 24.13 Both   Scaffold59336 1 1036 965 Asp GTC tatccgtcaa accatttttt 0 0 72.81 46.24 26.57 Both Scaffold59336 2 155 84 Asp GTC tatccaacgg aaggtctata 0 0 72.81 46.24 26.57 Both   Scaffold60233 1 1072 1000 Arg ACG ttctcacagc aatatttttg 0 0 70.30 55.68 14.62 Both   Scaffold61697 1 467 537 Ile TAT atatccagaa agtgatgttg 0 0 59.46 36.83 22.63 Both   Scaffold61869 1 140 212 Val AAC tggcatccaa tttttttttt 0 0 79.41 50.38 29.03 Both Scaffold61869 2 689 761 Val AAC aggtatccaa ttattttttc 0 0 79.41 50.38 29.03 Both Scaffold61869 3 1836 1908 Val AAC tgatatccaa cctttttcat 0 0 68.32 46.13 22.19 Both   Scaffold61995 1 687 616 Trp CCA tttttaactc aaacagttat 0 0 75.55 51.86 23.69 Both   Scaffold65761 1 1461 1390 Glu CTC tctgttgtta acatgcaaga 0 0 54.53 47.11 7.42 Both   Scaffold66871 1 691 620 Gly TCC attccatgaa actttttttt 0 0 71.94 51.75 20.19 Both   Scaffold66928 1 46 117 Pro TGG tcgcatcaaa taagatatct 0 0 71.64 48.51 23.13 Both Scaffold66928 2 210 281 Pro CGG aaacatttat ttcgtttgct 0 0 69.27 54.88 14.39 Both   Scaffold67817 1 888 997 Ile TAT attttcaact agcagttttt 926 961 55.61 32.71 22.90 Both Scaffold67817 2 337 228 Ile TAT attttcaact agcagttttt 299 272 51.47 36.90 14.57 Both   Scaffold68044 1 137 66 Gln CTG agatcaagac cgctcttttt 0 0 68.53 49.89 18.64 Both   Scaffold68906 1 441 513 Arg ACG ctctcacagc aatatttttg 0 0 70.30 55.68 14.62 Both   Scaffold68983 1 737 808 Asp GTC tatgcaagat acgcacgttt 0 0 63.97 43.75 20.22 Both   Scaffold69171 1 4772 4700 Val CAC gtaatatcgg acttttcctg 0 0 84.94 59.34 25.60 Both Scaffold69171 2 3931 3859 Val CAC attatatcgg atttttcttg 0 0 86.83 59.77 27.06 Both Scaffold69171 3 2914 2842 Val CAC ataccatcgg atttttgcta 0 0 82.50 55.43 27.07 Both Scaffold69171 4 2488 2416 Val CAC atcatatcgg acttttcttt 0 0 84.20 58.84 25.36 Both Scaffold69171 5 1491 1419 Val CAC ggaccgtcag attttttttt 0 0 84.94 59.34 25.60 Both   Scaffold74409 1 1263 1191 Ile AAT aacaggaata gatccatatc 0 0 70.45 46.13 24.32 Both   Scaffold74656 1 77 149 Lys TTT atattacgca atgccaagtt 0 0 78.76 55.38 23.38 Both   Scaffold75670 1 1048 977 Met CAT tcctcatcga aacttttttt 0 0 70.54 43.12 27.42 Both   Scaffold76067 1 648 577 Met CAT tttcaaggga atcattttga 0 0 70.54 43.12 27.42 Both   Scaffold76219 1 1059 1131 Lys TTT ctacaccgaa agagtatgtc 0 0 79.75 64.02 15.73 Both   Scaffold76291 1 110 40 Ile TAT aagccaggaa ttgttgtcat 0 0 63.54 41.26 22.28 Both   Scaffold76504 1 700 628 Arg TCT aacacatgca tcaacgttac 0 0 74.72 53.29 21.43 Both   Scaffold78291 1 1301 1218 Leu TAA acatatatcc aaaagatatc 0 0 73.10 41.53 31.57 Both Scaffold78291 2 1100 1017 Leu TAA acatatatcc aaaagatatc 0 0 70.47 40.60 29.87 Both Scaffold78291 3 899 816 Leu TAA acatatatcc aagagatatc 0 0 70.47 40.60 29.87 Both   Scaffold79539 1 538 466 Lys TTT aggattgtaa agagtatact 0 0 79.75 64.02 15.73 Both   Scaffold80187 1 7020 7091 Glu TTC gccatggcaa accttcatta 0 0 67.58 47.77 19.81 Both   Scaffold81408 1 536 608 Arg TCG acggccgcgt ttcagttttg 0 0 72.16 56.22 15.94 Both   Scaffold81422 1 251 180 Thr TGT gtttgcctaa taaattggta 0 0 77.61 53.12 24.49 Both   Scaffold82247 1 621 549 Arg ACG ttctcacagt aatatttttg 0 0 70.30 55.68 14.62 Both   Scaffold85203 1 747 676 Met CAT gtagtattta atgttttatt 0 0 64.52 46.14 18.38 Eufind   Scaffold86395 1 3506 3436 Gly GCC gatcgtaagc atatcctttt 0 0 80.07 61.09 18.98 Both Scaffold86395 2 2825 2755 Gly GCC gaatgtgagt agtacttttt 0 0 80.07 61.09 18.98 Both Scaffold86395 3 351 281 Gly GCC gatcgtgagc atttcctttt 0 0 80.07 61.09 18.98 Both   Scaffold87313 1 1383 1454 Asp GTC cgtcagttcc ttcttgattt 0 0 72.81 46.24 26.57 Both Scaffold87313 2 2679 2750 Asp GTC tatcaactaa tctctggttt 0 0 72.81 46.24 26.57 Both Scaffold87313 3 3215 3286 Asp GTC catcaactat gtcacgattt 0 0 64.89 38.32 26.57 Both Scaffold87313 4 3451 3522 Asp GTC aatcaactat tctctgtttt 0 0 72.81 46.24 26.57 Both Scaffold87313 5 3838 3909 Asp GTC ttatcaattt gtcacgattt 0 0 72.81 46.24 26.57 Both Scaffold87313 6 4234 4305 Asp GTC catcaactat tctctgtttt 0 0 72.81 46.24 26.57 Both Scaffold87313 7 4767 4838 Asp GTC catcaactat gtcacgattt 0 0 72.81 46.24 26.57 Both Scaffold87313 8 5150 5221 Asp GTC ttttcaccaa tctctgtttt 0 0 68.83 44.43 24.40 Both Scaffold87313 9 5535 5606 Asp GTC tatcaattct gtcacgattt 0 0 72.81 46.24 26.57 Both Scaffold87313 10 5925 5996 Asp GTC ttttcaccaa tctctgtttt 0 0 67.72 46.71 21.01 Both Scaffold87313 11 6310 6381 Asp GTC tatcaattct gtcacgattt 0 0 72.81 46.24 26.57 Both Scaffold87313 12 6700 6771 Asp GTC ttttcaccaa tctctgttta 0 0 61.73 39.58 22.15 Both Scaffold87313 13 7237 7308 Asp GTC catcaactat gtcacgattt 0 0 72.81 46.24 26.57 Both Scaffold87313 14 7623 7694 Asp GTC atttcaccaa gtcacgattt 0 0 61.73 39.58 22.15 Both   Scaffold91768 1 108 36 Val AAC tatcatctga aatcaataaa 0 0 72.52 47.54 24.98 Both   Scaffold92536 1 175 103 Arg ACG acctgtcagt aatttttttg 0 0 68.85 53.16 15.69 Both   Scaffold94324 1 487 415 Thr TGT gtacgacatc ccatctctcg 0 0 78.37 47.55 30.82 Both   Scaffold94827 1 337 265 Met CAT catatcagca tactgctcag 0 0 74.61 55.57 19.04 Both   Scaffold97369 1 258 177 Ser TGA tatatgtaga tgatgtggtt 0 0 86.84 53.89 32.95 Both   Scaffold97499 1 266 375 Ile TAT gagttcaaca aacggttttc 304 339 62.55 38.27 24.28 Both   Scaffold97894 1 449 377 Lys TTT gtctgccgaa agagtatacc 0 0 79.75 64.02 15.73 Both   Scaffold98400 1 3 76 Asn GTT     0 0 80.75 57.13 23.62 Both   Scaffold98612 1 543 615 Met CAT tttaccagca ggcatactgc 0 0 74.61 55.57 19.04 Both   Scaffold99503 1 234 305 Trp CCA taaacacgaa atttctcttt 0 0 76.75 54.16 22.59 Both   Scaffold100003 1 80 9 Ala TGC     0 0 76.61 51.27 25.34 Both   Scaffold100136 1 326 253 Arg TCT acttgtctag gtatcctttt 0 0 74.94 55.78 19.16 Both   Scaffold100639 1 293 364 Gln TTG agatatccgc cttattgaca 0 0 66.99 48.71 18.28 Both   Scaffold100857 1 53 125 Val TAC ttgcatgaac ctctcttttg 0 0 74.23 58.98 15.25 Both   Scaffold103781 1 307 234 Arg TCT gcttgtccaa tcctttttcg 0 0 69.23 55.74 13.49 Both   Scaffold104173 1 217 146 Pro TGG attcaagcaa cgtgtatttt 0 0 63.74 40.60 23.14 Both   Scaffold105845 1 185 113 Ile AAT ggcaggaata tatcctcatt 0 0 63.32 41.53 21.79 Both   Scaffold108253 1 140 68 Lys TTT tcttgtcgaa agaatagatt 0 0 79.75 64.02 15.73 Both   Scaffold109795 1 210 281 Pro TGG ttttatcaaa taatatatta 0 0 71.64 48.51 23.13 Both   Scaffold110051 1 263 191 Thr AGT ggattcgagt tttgtcggtc 0 0 70.82 50.25 20.57 Both   Scaffold110986 1 150 222 Lys TTT cttaaccgaa agagtagaca 0 0 79.75 64.02 15.73 Both

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.