GtRNAdb

tRNAscan-SE Analysis of Shewanella halifaxensis HAW EB4

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>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 1 47327 47403 Asp GTC ctttgctaaa acataaagac0 0 97.44 78.9518.49  
chr 2 547851 547927 Ile GAT aaattacgtt aaatctttat0 0 92.16 74.4417.72  
chr 3 547993 548068 Ala TGC gcatgtaaat tttacatctt0 0 89.75 68.0421.71  
chr 4 707314 707404 Ser TGA agcgtcgttc cattcaagat0 0 68.82 34.1634.66  
chr 5 707746 707836 Ser TGA tgcggcgttc catttagaga0 0 68.82 34.1634.66  
chr 6 839171 839255 Leu CAA tgttgataat ttatcaacaa0 0 73.28 39.3533.93  
chr 7 1503124 1503215 Ser GCT gccaagaaac tttcttacaa0 0 68.96 46.2222.74  
chr 8 1503237 1503313 Arg ACG agacaacgat tttctattgt0 0 91.84 72.3519.49  
chr 9 1503344 1503420 Arg ACG gttttagtga ttaaatcatt0 0 84.77 69.2615.51  
chr 10 1503453 1503529 Arg ACG cattctatat tagagtgaaa0 0 91.84 72.3519.49  
chr 11 1503561 1503637 Arg ACG ttttatatga tataaaacat0 0 91.84 72.3519.49  
chr 12 1503673 1503749 Arg ACG taccgatttt tgaattgacg0 0 91.83 72.2819.55  
chr 13 1503759 1503850 Ser GCT atgaattgac tcatttgaac0 0 68.96 46.2222.74  
chr 14 1503927 1504003 Arg ACG ttttatatga tatgaaacca0 0 91.84 72.3519.49  
chr 15 1504037 1504113 Arg ACG taccgatttt tgaattgacg0 0 91.83 72.2819.55  
chr 16 1504123 1504214 Ser GCT atgaattgac tcattacatg0 0 68.96 46.2222.74  
chr 17 1857970 1858045 Ala GGC tagttagtga tctaactaaa0 0 84.54 62.9921.55  
chr 18 1858126 1858201 Glu TTC tgcagtccgg ctattttacg0 0 60.49 33.0527.44  
chr 19 1858311 1858386 Glu TTC tgcagtccgg ctattttacg0 0 60.49 33.0527.44  
chr 20 1858496 1858571 Glu TTC tgcagtccgg ctattttaaa0 0 60.49 33.0527.44  
chr 21 1858819 1858894 Glu TTC atatgtccgg ctattttacg0 0 60.49 33.0527.44  
chr 22 1859144 1859219 Glu TTC atatgtccgg ctattttaaa0 0 60.49 33.0527.44  
chr 23 1859467 1859542 Glu TTC atatgtccgg ctattttacg0 0 60.49 33.0527.44  
chr 24 1859652 1859727 Glu TTC tgcagtccgg ctatttataa0 0 60.49 33.0527.44  
chr 25 1859775 1859850 Ala GGC taccagaaat aatttatcat0 0 84.54 62.9921.55  
chr 26 2029151 2029226 Lys TTT aataccagag cttttctgaa0 0 93.99 70.1923.80  
chr 27 2029285 2029360 Lys TTT aataccagag cttttctgaa0 0 93.99 70.1923.80  
chr 28 2029419 2029494 Lys TTT aataccagag cttttctgaa0 0 93.99 70.1923.80  
chr 29 2029553 2029628 Lys TTT aataccagag cttttctgaa0 0 93.99 70.1923.80  
chr 30 2029687 2029762 Lys TTT aatgccagag cttttctaca0 0 93.99 70.1923.80  
chr 31 2029958 2030033 Lys TTT aataccagag cttttctgaa0 0 93.99 70.1923.80  
chr 32 2030092 2030167 Lys TTT aataccagag cttttctaca0 0 93.99 70.1923.80  
chr 33 2250569 2250645 Asp GTC cacttgatga atcaagtgct0 0 97.44 78.9518.49  
chr 34 2250729 2250805 Asp GTC gtaaagtttt atttagtagt0 0 97.44 78.9518.49  
chr 35 2250886 2250962 Asp GTC aaaaagttta acacaaagac0 0 97.44 78.9518.49  
chr 36 2431203 2431279 Met CAT agaacacagt attcttgaac0 0 83.64 57.1426.50  
chr 37 2431293 2431369 Val GAC cttgaacaat attctctgat0 0 89.40 60.7228.68  
chr 38 2431407 2431483 Met CAT attatcctgt atacaaccgt0 0 83.64 57.1426.50  
chr 39 2431486 2431562 Val GAC cgcaaccaat attctttgat0 0 89.40 60.7228.68  
chr 40 2431759 2431835 Met CAT tcaaatcgga attcttttat0 0 83.64 57.1426.50  
chr 41 2431880 2431956 Met CAT tcaaatcgga attcttttat0 0 83.64 57.1426.50  
chr 42 2432002 2432078 Met CAT tcaaatcgga attcttttat0 0 83.64 57.1426.50  
chr 43 2432124 2432200 Met CAT ttaaatcgga attcttttat0 0 83.64 57.1426.50  
chr 44 2432246 2432322 Met CAT ttaaatcgga attcttttat0 0 83.64 57.1426.50  
chr 45 2432517 2432593 Met CAT tcaaatcgga attcttttta0 0 83.64 57.1426.50  
chr 46 2505228 2505303 Gly GCC aaattgaaat atttaaatca0 0 88.79 60.4128.38  
chr 47 2505317 2505390 Cys GCA taaatcatgt caaattaaga0 0 56.43 30.4226.01  
chr 48 2505476 2505561 Leu TAA caaagagttt tcattaaagc0 0 66.45 31.6734.78  
chr 49 2510859 2510949 Ser TGA cgcggcgttc cattctagat0 0 68.82 34.1634.66  
chr 50 3032737 3032813 Pro GGG ttgaatatct cattaaacaa0 0 71.80 45.5926.21  
chr 51 3965768 3965843 Phe GAA agcgcccgtt atctttagtt0 0 86.95 63.1523.80  
chr 52 5051461 5051385 Ile GAT aaattacgtt aaatctttat0 0 92.16 74.4417.72  
chr 53 5051319 5051244 Ala TGC gcatgtaaat tttacatctt0 0 89.75 68.0421.71  
chr 54 5047615 5047539 Asp GTC ctttgctaaa acacaacgaa0 0 97.44 78.9518.49  
chr 55 5043887 5043812 Thr TGT gaaatgacac tttctctgga0 0 93.97 70.5623.41  
chr 56 5043804 5043720 Tyr GTA ccatttctct tattctaggt0 0 68.94 41.4427.50  
chr 57 5043684 5043611 Gly TCC agtaggttcc aaatctcgct0 0 62.23 39.2522.98  
chr 58 4785963 4785887 Arg CCG aacaaggcag gaatggaaac0 0 85.09 63.5421.55  
chr 59 4785847 4785772 His GTG aatatcagtg ttttcctaac0 0 73.72 51.6722.05  
chr 60 4785740 4785664 Pro TGG tgtaaaaact tatatataaa0 0 86.73 59.5927.14  
chr 61 4785605 4785529 Pro TGG aaaagatttt cttttacatg0 0 86.73 59.5927.14  
chr 62 4713263 4713188 Thr GGT atagagtttt tttttatagt0 0 89.50 59.0430.46  
chr 63 4439487 4439412 Gly GCC aaagatttat aatttaaact0 0 88.79 60.4128.38  
chr 64 4439363 4439288 Gly GCC aaagatttac atttaaactt0 0 88.79 60.4128.38  
chr 65 4439240 4439165 Gly GCC aaagatttac atttaaactt0 0 88.79 60.4128.38  
chr 66 4439117 4439042 Gly GCC aaagatttac atttaaagat0 0 88.79 60.4128.38  
chr 67 4439027 4438952 Gly GCC aaagatttat atcttcctcc0 0 88.79 60.4128.38  
chr 68 3954188 3954112 Ile GAT aaattacgtt aaatctttat0 0 92.16 74.4417.72  
chr 69 3954046 3953971 Ala TGC gcatgtaaat tttacatctt0 0 89.75 68.0421.71  
chr 70 3949229 3949153 Trp CCA atctctcaaa aatttgaaaa0 0 73.37 54.1119.26  
chr 71 3948939 3948863 Trp CCA tttcgtcgac aatttgaaaa0 0 73.37 54.1119.26  
chr 72 3922957 3922881 Met CAT aagaaacgat tcttaatcag0 0 91.79 73.1318.66  
chr 73 3922773 3922689 Leu TAG ctgatgttgt tttattaaga0 0 61.46 41.8519.61  
chr 74 3922640 3922566 Gln TTG aaagattttt tctttggcaa0 0 70.78 43.5327.25  
chr 75 3922560 3922484 Met CAT agccatcttt tctttttcta0 0 91.79 73.1318.66  
chr 76 3922314 3922230 Leu TAG cagatgcagt ttatttaaca0 0 67.29 41.4625.83  
chr 77 3922181 3922107 Gln TTG aaagattgat ttttataagg0 0 70.78 43.5327.25  
chr 78 3922010 3921926 Leu TAG aaagttcgat tcgaatttaa0 0 67.29 41.4625.83  
chr 79 3921905 3921831 Gln TTG caagatttat tataataaaa0 0 70.78 43.5327.25  
chr 80 3921784 3921700 Leu TAG tagatgcagt tttatttaac0 0 67.29 41.4625.83  
chr 81 3921650 3921576 Gln TTG aaagtttgat tatattgaaa0 0 70.78 43.5327.25  
chr 82 3846492 3846406 Leu GAG acggttttat aatctttgat0 0 73.43 42.0631.37  
chr 83 3846301 3846225 Met CAT cacaagttgt gcttcccagt0 0 89.02 64.2824.74  
chr 84 3362219 3362143 Pro TGG tttcaaattt catttaaact0 0 86.73 59.5927.14  
chr 85 3362079 3362003 Arg TCT tcattaccga tttttgtggt0 0 94.45 76.3618.09  
chr 86 3361994 3361919 His GTG catttttgtg ctcattctgt0 0 73.72 51.6722.05  
chr 87 2835625 2835535 Ser TGA tacggcgttc tattaagaaa0 0 68.10 32.8135.29  
chr 88 2832084 2832009 Gly GCC aaattgaaat atttaaacca0 0 88.79 60.4128.38  
chr 89 2831995 2831922 Cys GCA taaaccatgt cattaagagt0 0 56.43 30.4226.01  
chr 90 2831839 2831754 Leu TAA caaagagttt tcattaaagc0 0 66.45 31.6734.78  
chr 91 2831059 2830986 Cys GCA gtaacgaaat taacctttta0 0 56.43 30.4226.01  
chr 92 2830875 2830790 Leu TAA caaagagttt tcttcttatg0 0 66.45 31.6734.78  
chr 93 2702926 2702837 Ser GGA atattgcatc tattagaaga0 0 57.17 27.2929.88  
chr 94 2330959 2330875 Tyr GTA ccgcaattga tttgcgcaca0 0 68.94 41.4427.50  
chr 95 2330844 2330760 Tyr GTA agatattcgt tttctataag0 0 68.94 41.4427.50  
chr 96 2330678 2330594 Tyr GTA aagacaatgt cttcttaact0 0 68.94 41.4427.50  
chr 97 2330481 2330397 Tyr GTA aagacaatgt cttcttaatt0 0 68.94 41.4427.50  
chr 98 2330286 2330202 Tyr GTA aagaaaatgt cttcttattc0 0 68.94 41.4427.50  
chr 99 2323667 2323592 Asn GTT cttaaacgct agttaagtta0 0 84.72 64.8719.85  
chr 100 2323546 2323471 Asn GTT aaaaagtaat ctttttatag0 0 84.72 64.8719.85  
chr 101 2323428 2323353 Asn GTT aaatagcaat tttttagtgt0 0 84.72 64.8719.85  
chr 102 2323324 2323249 Asn GTT gtattgcgat cttttattaa0 0 84.72 64.8719.85  
chr 103 2323187 2323112 Asn GTT gtaattcgat cttattatta0 0 84.72 64.8719.85  
chr 104 2323073 2322998 Asn GTT gtaattcgat ctttaataaa0 0 84.72 64.8719.85  
chr 105 2322958 2322883 Asn GTT ttttttcgat accttttaat0 0 84.72 64.8719.85  
chr 106 1855901 1855826 Val TAC cacacagcga ttctttttta0 0 94.67 70.3224.35  
chr 107 1855787 1855712 Val TAC gtaaatccca ttcttttcgt0 0 94.67 70.3224.35  
chr 108 1855674 1855599 Val TAC tgaaatccca ttcttttcat0 0 94.67 70.3224.35  
chr 109 1855561 1855486 Val TAC tgaaatccca ttcttttcat0 0 94.67 70.3224.35  
chr 110 1855448 1855373 Val TAC tgaaatccca ttcttttcat0 0 94.67 70.3224.35  
chr 111 1855335 1855260 Val TAC tgaaatccca ttcttttcat0 0 94.67 70.3224.35  
chr 112 1855222 1855147 Val TAC tgaaatccca ttcttttcat0 0 94.67 70.3224.35  
chr 113 1855109 1855034 Val TAC tgaaatccca ttcttttcgt0 0 94.67 70.3224.35  
chr 114 1854996 1854921 Val TAC tgaaatccca ttcttttcgt0 0 94.67 70.3224.35  
chr 115 1854883 1854808 Val TAC tgaaatccca ttcttttcat0 0 94.67 70.3224.35  
chr 116 1854770 1854695 Val TAC tgaaatccca ttttctacat0 0 94.67 70.3224.35  
chr 117 1716529 1716454 Arg CCT tcactagcgt tatacactcc0 0 68.58 42.2526.33  
chr 118 1404547 1404472 Phe GAA gcgcttagtt acatttatta0 0 86.95 63.1523.80  
chr 119 1404419 1404344 Thr TGT aaaaaaataa taaaaacaaa0 0 93.97 70.5623.41  
chr 120 1403906 1403831 Phe GAA gcgcttagtt acatttttta0 0 86.95 63.1523.80  
chr 121 1403778 1403703 Thr TGT agacaaataa taaaaacaaa0 0 93.97 70.5623.41  
chr 122 1403174 1403099 Phe GAA gcgattagtt acatttttta0 0 86.95 63.1523.80  
chr 123 1403046 1402971 Thr TGT agacaaataa taaaaacaaa0 0 93.97 70.5623.41  
chr 124 1234477 1234401 Met CAT atcttaagtc attttgataa0 0 93.61 70.0923.52  
chr 125 601996 601906 SeC(p) TCA caagtgatac gccaaatcac0 0 58.72 0.000.00  


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.