tRNAscan-SE v.1.23 (April 2002) scan results (on host lowedev.cse.ucsc.edu)
Started: Thu Jul 17 20:53:52 PDT 2008

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Search Mode:                 Eukaryotic
Searching with:              tRNAscan + EufindtRNA -> Cove
Covariance model:            TRNA2-euk.cm
tRNAscan parameters:         Strict
EufindtRNA parameters:       Relaxed (Int Cutoff= -32.1)

Reporting HMM/2' structure score breakdown
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First-pass (tRNAscan/EufindtRNA) Stats:
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Sequences read:         4
Seqs w/at least 1 hit:  4
Bases read:             12591251 (x2 for both strands)
Bases in tRNAs:         20474
tRNAs predicted:        238
Av. tRNA length:        86
Script CPU time:        2.01 s
Scan CPU time:          8.04 s
Scan speed:             3132.2 Kbp/sec

First pass search(es) ended: Thu Jul 17 20:54:03 PDT 2008

Cove Stats:
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Candidate tRNAs read:     238
Cove-confirmed tRNAs:     188
Bases scanned by covels:  23806
% seq scanned by covels:  0.1 %
Script CPU time:          0.61 s
Cove CPU time:            26.56 s
Scan speed:               896.3 bp/sec

Cove analysis of tRNAs ended: Thu Jul 17 20:54:33 PDT 2008

Summary
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Overall scan speed: 676585.2 bp/sec

tRNAs decoding Standard 20 AA:              186
Selenocysteine tRNAs (TCA):                 0
Possible suppressor tRNAs (CTA,TTA):        0
tRNAs with undetermined/unknown isotypes:   0
Predicted pseudogenes:                      2
                                            -------
Total tRNAs:                                188

tRNAs with introns:     	44

| Ala-CGC: 1 | Pro-CGG: 1 | Val-AAC: 9 | Ser-CGA: 1 | Ser-TGA: 2 | Ser-GCT: 3 | Arg-CCG: 1 | Arg-CCT: 1 | Leu-CAG: 1 | Leu-TAG: 1 | Leu-CAA: 4 | Leu-TAA: 2 | Lys-CTT: 9 | Ile-TAT: 1 | Met-CAT: 3 | Tyr-GTA: 4 |

Isotype / Anticodon Counts:

Ala   : 12	  AGC: 9       GGC:         CGC: 1       TGC: 2     
Gly   : 12	  ACC:         GCC: 8       CCC: 1       TCC: 3     
Pro   : 9	  AGG: 6       GGG:         CGG: 1       TGG: 2     
Thr   : 11	  AGT: 7       GGT:         CGT: 1       TGT: 3     
Val   : 13	  AAC: 9       GAC:         CAC: 1       TAC: 3     
Ser   : 14	  AGA: 7       GGA:         CGA: 1       TGA: 3       ACT:         GCT: 3     
Arg   : 15	  ACG: 8       GCG:         CCG: 1       TCG: 2       CCT: 1       TCT: 3     
Leu   : 14	  AAG: 5       GAG:         CAG: 1       TAG: 2       CAA: 4       TAA: 2     
Phe   : 6	  AAA:         GAA: 6                               
Asn   : 7	  ATT:         GTT: 7                               
Lys   : 13	                            CTT: 9       TTT: 4     
Asp   : 8	  ATC:         GTC: 8                               
Glu   : 11	                            CTC: 6       TTC: 5     
His   : 5	  ATG:         GTG: 5                               
Gln   : 6	                            CTG: 2       TTG: 4     
Ile   : 10	  AAT: 8       GAT: 1                    TAT: 1     
Met   : 10	                            CAT: 10                 
Tyr   : 4	  ATA:         GTA: 4                               
Supres: 0	                            CTA:         TTA:       
Cys   : 3	  ACA:         GCA: 3                               
Trp   : 3	                            CCA: 3                  
SelCys: 0	                                         TCA: