tRNAscan-SE Analysis of the Saccharomyces cerevisiae (Nov 2002) Genome


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tRNA Gene Summary




tRNAs Decoding Standard 20 AA273
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
2
Predicted pseudogenes0
Total tRNAs275


Intron Summary

tRNAs with introns
59
Pro
TGG
10
Ser
CGA
1
Ser
GCT
2
Leu
TAG
3
Leu
CAA
10
Phe
GAA
10
Lys
TTT
7
Ile
TAT
2
Tyr
GTA
8
Trp
CCA
6


Four Box tRNA Sets

IsotypeAnticodon CountTotal
AlaAGC
11
GGC
 
CGC
 
TGC
5
16
GlyACC
 
GCC
16
CCC
2
TCC
3
21
ProAGG
2
GGG
 
CGG
 
TGG
10
12
ThrAGT
11
GGT
 
CGT
1
TGT
4
16
ValAAC
14
GAC
 
CAC
2
TAC
2
18

Six Box tRNA Sets

IsotypeAnticodon CountTotal
SerAGA
11
GGA
 
CGA
1
TGA
3
ACT
 
GCT
2
 
 
 
 
17
ArgACG
6
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
11
19
LeuAAG
 
GAG
1
CAG
 
TAG
3
 
 
 
 
CAA
10
TAA
7
21

Two Box tRNA Sets

IsotypeAnticodon CountTotal
PheAAA
 
GAA
10
 
 
 
 
10
AsnATT
 
GTT
10
 
 
 
 
10
Lys 
 
 
 
CTT
14
TTT
7
21
AspATC
 
GTC
16
 
 
 
 
16
Glu 
 
 
 
CTC
2
TTC
14
16
HisATG
 
GTG
7
 
 
 
 
7
Gln 
 
 
 
CTG
1
TTG
9
10

Two Box & Other tRNA Sets

IsotypeAnticodon CountTotal
IleAAT
13
GAT
 
 
 
TAT
2
15
Met 
 
 
 
CAT
10
 
 
10
TyrATA
 
GTA
8
 
 
 
 
8
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
4
 
 
 
 
4
Trp 
 
 
 
CCA
6
 
 
6
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe, Please email lowe@soe.ucsc.edu with any questions, comments, or corrections.