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tRNAscan-SE Analysis of Sorghum bicolor (Version 1.0)

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr_8 20 52137907 52137979 Ala AGC cagcacctgt ctattttttt 0 0 56.03 31.69 24.34 Both chr_2 57 66384241 66384169 Ala AGC ggaaccatat acttttgttc 0 0 60.69 39.96 20.73 Both chr_1 64 52471550 52471478 Ala AGC taagcacatt ctcgtttttg 0 0 60.71 38.23 22.48 Both chr_5 33 3374562 3374490 Ala AGC atcaacatca aaaaaaattt 0 0 60.71 38.23 22.48 Both chr_1 10 5243837 5243909 Ala AGC ctaacacaaa tctcgtaaat 0 0 68.12 43.78 24.34 Both chr_1 18 19640974 19641046 Ala AGC ttagcagaat ctttttacag 0 0 68.12 43.78 24.34 Both chr_1 67 49822442 49822370 Ala AGC aatcatgaaa ttatttttaa 0 0 68.12 43.78 24.34 Both chr_1 84 8138851 8138779 Ala AGC ctgagcatat ttataatttt 0 0 68.12 43.78 24.34 Both chr_1 9 5239961 5240033 Ala AGC gtttcactga ttttattgtc 0 0 68.12 43.78 24.34 Both chr_10 19 60041107 60041179 Ala AGC aagacaaaaa tttgtatttg 0 0 68.12 43.78 24.34 Both chr_10 32 4085148 4085076 Ala AGC agaatattca tatatttttt 0 0 68.12 43.78 24.34 Both chr_2 44 74766403 74766475 Ala AGC tgtcacacat gttttttcac 0 0 68.12 43.78 24.34 Both chr_4 3 1055512 1055584 Ala AGC tcacatctca ttattatctt 0 0 68.12 43.78 24.34 Both chr_4 76 1371720 1371648 Ala AGC taacaaatct atttctgata 0 0 68.12 43.78 24.34 Both chr_5 16 57391798 57391870 Ala AGC tttcacaaat tctaattatt 0 0 68.12 43.78 24.34 Both chr_7 25 59796176 59796248 Ala AGC caaacacaga tattagtttt 0 0 68.12 43.78 24.34 Both chr_7 38 57276737 57276665 Ala AGC aaaacaaaaa tctattccct 0 0 68.12 43.78 24.34 Both chr_8 41 3311355 3311283 Ala AGC aattccaaca attagtttat 0 0 68.12 43.78 24.34 Both chr_1 57 60598312 60598240 Ala CGC gaacacaatt ctttttattt 0 0 65.14 41.26 23.88 Both chr_2 47 77300605 77300677 Ala CGC agaccacaac cctctttttc 0 0 65.14 41.26 23.88 Both chr_4 4 1082547 1082619 Ala CGC agcatcatct aatttttttg 0 0 65.14 41.26 23.88 Both chr_6 19 60563179 60563107 Ala CGC acaacgaata ttttttttct 0 0 65.14 41.26 23.88 Both chr_6 20 60560596 60560524 Ala CGC ctatcatata tttttttgtt 0 0 65.14 41.26 23.88 Both chr_6 25 57008157 57008085 Ala CGC gtgcatcgaa tttttttggt 0 0 65.14 41.26 23.88 Both chr_2 28 60610937 60611009 Ala CGC tgatcaatat gttttgctaa 0 0 65.78 42.22 23.56 Both chr_4 19 53072205 53072277 Ala CGC agaacgaaat aaaaaataca 0 0 65.78 42.22 23.56 Both chr_4 39 64913483 64913411 Ala CGC gaatgtcatt tttctcatat 0 0 65.78 42.22 23.56 Both chr_4 40 64005816 64005744 Ala CGC gaatgtcaaa agttttgttt 0 0 65.78 42.22 23.56 Both chr_7 19 56677719 56677791 Ala CGC cagcatcgaa tagttttacg 0 0 65.78 42.22 23.56 Both chr_5 36 1974977 1974904 Ala TGC gatcaaactt attattgttt 0 0 24.86 16.56 8.30 Eufind chr_8 27 54321043 54320969 Ala TGC gatcaaagtt acttaatact 0 0 32.54 15.12 17.42 Eufind chr_8 25 54327177 54327103 Ala TGC aacaaaaatt atttattctt 0 0 41.24 23.25 17.99 Eufind chr_1 68 49634380 49634308 Ala TGC tagataacaa ttttttatta 0 0 66.31 41.98 24.33 Both chr_4 25 56950862 56950934 Ala TGC tttgacagtt ttgtcctctc 0 0 66.31 41.98 24.33 Both chr_4 55 52312700 52312628 Ala TGC caacgtgaaa atttgttttt 0 0 66.31 41.98 24.33 Both chr_5 10 17305906 17305978 Ala TGC tactcatcct tgttttcctt 0 0 66.31 41.98 24.33 Both chr_5 42 1973265 1973193 Ala TGC tttgcaacaa tttttttttt 0 0 66.31 41.98 24.33 Both chr_5 9 17299563 17299635 Ala TGC caacaacagc cttggatgag 0 0 66.31 41.98 24.33 Both chr_6 10 52373575 52373647 Ala TGC ttagcatcac attgtttttg 0 0 66.31 41.98 24.33 Both chr_8 24 55001163 55001235 Ala TGC aaaacgaata ttttttaaaa 0 0 66.31 41.98 24.33 Both chr_8 8 7598984 7599056 Ala TGC aaacatgaaa tttttactgt 0 0 66.31 41.98 24.33 Both chr_9 54 654999 654927 Ala TGC atccatcata tgtgtatttt 0 0 70.41 46.07 24.34 Both   chr_1 14 8569424 8569497 Arg ACG ggagacgggt cagccttcca 0 0 54.86 43.05 11.81 Eufind chr_3 71 28861322 28861249 Arg ACG gagacggggt cagccttcca 0 0 61.16 46.00 15.16 Eufind scaffold_59 6 199939 200012 Arg ACG gagacggggt cagccttcca 0 0 61.16 46.00 15.16 Eufind chr_1 76 14386726 14386654 Arg ACG cacatcaaat acctgtcata 0 0 66.77 47.52 19.25 Both chr_1 48 67538162 67538090 Arg ACG tagcatcaga tttcagccat 0 0 74.06 52.84 21.22 Both chr_1 74 15599302 15599230 Arg ACG agcatctgct caaattcttt 0 0 74.06 52.84 21.22 Both chr_1 77 14384364 14384292 Arg ACG aacatcaaat aatgtatatt 0 0 74.06 52.84 21.22 Both chr_1 87 6600295 6600223 Arg ACG gcccaacaaa aaataaattt 0 0 74.06 52.84 21.22 Both chr_3 22 58779619 58779691 Arg ACG tttcaacaat cttggtcaag 0 0 74.06 52.84 21.22 Both chr_3 29 62922074 62922146 Arg ACG acacaacaag taatattttt 0 0 74.06 52.84 21.22 Both chr_3 30 62922216 62922288 Arg ACG tgtcaacaag tattcttttt 0 0 74.06 52.84 21.22 Both chr_6 6 48234781 48234853 Arg ACG actcagcaat tttctctctt 0 0 74.06 52.84 21.22 Both chr_8 19 49728666 49728738 Arg ACG tctcacaagt ttttttaact 0 0 74.06 52.84 21.22 Both chr_9 27 57489032 57488960 Arg ACG cagcatgaat gtcactcgtt 0 0 74.06 52.84 21.22 Both chr_9 32 55062643 55062571 Arg ACG agacaacaat attttatttt 0 0 74.06 52.84 21.22 Both chr_2 68 18815786 18815714 Arg CCG ccatcaatat tccgtgcttt 0 0 69.43 54.73 14.70 Both chr_6 24 57460297 57460225 Arg CCG acaacaattt atcccaaatt 0 0 69.43 54.73 14.70 Both chr_7 24 59497380 59497452 Arg CCG atacatctca tttatttctt 0 0 69.43 54.73 14.70 Both chr_7 8 8213722 8213794 Arg CCG tacacaagat ttgccgctct 0 0 69.43 54.73 14.70 Both chr_10 16 56791521 56791593 Arg CCG taaatgtcct ttatcgcggt 0 0 71.00 55.01 15.99 Both chr_6 8 51863499 51863571 Arg CCG gcaagaaatt tttttgttgc 0 0 71.00 55.01 15.99 Both chr_3 34 67022420 67022492 Arg CCG acacaagcat aatatatttg 0 0 74.97 52.44 22.53 Both chr_4 77 1052973 1052901 Arg CCT gaacaacact tatttttttg 0 0 69.53 51.97 17.56 Both chr_1 16 11368750 11368822 Arg CCT tttgcactaa atatttctat 0 0 72.16 52.89 19.27 Both chr_1 86 6920642 6920570 Arg CCT caaacaccaa ttttttattt 0 0 72.16 52.89 19.27 Both chr_10 17 56811502 56811574 Arg CCT taacagttaa cggttctttt 0 0 72.16 52.89 19.27 Both chr_3 64 57001586 57001514 Arg CCT gccaagcaaa agttgttttt 0 0 72.16 52.89 19.27 Both chr_4 5 1375861 1375933 Arg CCT catataaaaa gaattttttt 0 0 72.16 52.89 19.27 Both chr_5 30 54233478 54233406 Arg CCT ctgcacacta ttttttcaac 0 0 72.16 52.89 19.27 Both chr_9 12 47377493 47377565 Arg CCT agtaaaaaga attttatttt 0 0 72.16 52.89 19.27 Both chr_9 22 58296231 58296303 Arg CCT ttacaacaca tttttatttc 0 0 72.16 52.89 19.27 Both chr_1 13 8451698 8451770 Arg CCT ataatgtata aattatacat 0 0 74.06 49.80 24.26 Both chr_1 38 68623736 68623809 Arg TCG ttcacgcacc accattttgt 0 0 81.86 60.33 21.53 Both chr_1 53 62517197 62517124 Arg TCG tagcatcagc accattatgt 0 0 81.86 60.33 21.53 Both chr_9 2 1797573 1797646 Arg TCG gacatcaaat acacatgtta 0 0 81.86 60.33 21.53 Both chr_9 5 5646158 5646231 Arg TCG aaacacaaag gttatttttt 0 0 81.86 60.33 21.53 Both scaffold_59 16 518270 518341 Arg TCT cgaaagagaa atcttttttc 0 0 62.51 33.29 29.22 Eufind chr_2 34 67333074 67333146 Arg TCT atcacaaacg agttatatgt 0 0 70.00 54.05 15.95 Both chr_7 43 4304298 4304226 Arg TCT gaacagaaca ctattactct 0 0 70.00 54.05 15.95 Both chr_7 9 12657567 12657639 Arg TCT aattcaatag gaatatattt 0 0 70.00 54.05 15.95 Both chr_3 43 73685634 73685562 Arg TCT ccgcaagtga taaaaatttt 0 0 70.40 54.81 15.59 Both chr_7 44 404295 404223 Arg TCT tatcacacaa caatttgttt 0 0 70.45 50.56 19.89 Both chr_8 6 5867660 5867732 Arg TCT aaactaatca ttttttttct 0 0 72.11 52.26 19.85 Both   chr_9 44 48324274 48324204 Asn ATT ctctccttgt atttgattca 0 0 46.71 36.71 10.00 Eufind chr_1 43 72988839 72988912 Asn GTT acaccaacaa tatttttttt 0 0 76.72 54.57 22.15 Both chr_3 18 28860924 28860995 Asn GTT ctccccttgt atttgattca 0 0 77.16 56.33 20.83 Both scaffold_59 22 200337 200266 Asn GTT ctccccttgt atttgattca 0 0 77.16 56.33 20.83 Both chr_9 45 46168794 46168721 Asn GTT agccatcaca tatttttcga 0 0 80.87 56.52 24.35 Both chr_1 58 59034863 59034790 Asn GTT aattaacacg ataatttttc 0 0 81.73 55.58 26.15 Both chr_2 30 64611046 64611119 Asn GTT aacataaatt atttttttaa 0 0 81.73 55.58 26.15 Both chr_2 23 54410251 54410324 Asn GTT gtcatgatac tatttttgtt 0 0 81.83 55.73 26.10 Both chr_2 54 72785404 72785331 Asn GTT ataaacataa aattaaattt 0 0 81.83 55.73 26.10 Both chr_5 22 59109176 59109249 Asn GTT gtcatcagtt tctaattttt 0 0 81.83 55.73 26.10 Both chr_9 26 57685973 57685900 Asn GTT agtgcacata tcaatttttt 0 0 81.83 55.73 26.10 Both chr_9 3 2281527 2281600 Asn GTT aagatcaaca tcatattttt 0 0 81.83 55.73 26.10 Both chr_9 4 2289025 2289098 Asn GTT aagaacagca cttttttatc 0 0 81.83 55.73 26.10 Both chr_9 53 3969973 3969900 Asn GTT gacagcagat gttttttctt 0 0 81.83 55.73 26.10 Both chr_9 51 5295750 5295677 Asn GTT atgtatgaga aatttttttg 0 0 82.24 56.49 25.75 Both chr_1 62 53396757 53396684 Asn GTT gaaatcaatt gatatttttt 0 0 82.33 56.73 25.60 Both chr_7 27 61055658 61055731 Asn GTT aaaatcaatt ctttttttaa 0 0 82.33 56.73 25.60 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_11 1 5770309 5770238 Asp ATC ggaatgttct ccataaatgc 0 0 38.54 29.17 9.37 tRNAscan chr_3 73 14240936 14240863 Asp ATC acaccccaca aactagggtt 0 0 50.98 45.45 5.53 Both scaffold_59 30 13575 13502 Asp GTC acaccccgca aactagggtt 0 0 61.37 43.91 17.46 Both chr_10 7 6049968 6050039 Asp GTC cagcaagcaa attttgtttt 0 0 68.94 50.25 18.69 Both chr_3 61 59743785 59743714 Asp GTC aaccaacaac gtttgttttt 0 0 68.94 50.25 18.69 Both chr_4 10 4357726 4357797 Asp GTC gtacatcaga atcttttatt 0 0 68.94 50.25 18.69 Both chr_6 16 59022685 59022756 Asp GTC acccaaccaa tttgttttgg 0 0 68.94 50.25 18.69 Both chr_9 18 55547911 55547982 Asp GTC aaacaacaag ttttttttgt 0 0 68.94 50.25 18.69 Both chr_9 33 54701325 54701254 Asp GTC caacacgtaa atactctttt 0 0 68.94 50.25 18.69 Both chr_10 35 657883 657812 Asp GTC atcaaacaaa atttttttat 0 0 69.33 50.98 18.35 Both chr_1 61 55402365 55402294 Asp GTC tagcaaccaa caattttttt 0 0 70.78 52.44 18.34 Both chr_1 75 14565145 14565074 Asp GTC aaacaaccaa tgctttgttt 0 0 70.78 52.44 18.34 Both chr_10 34 977588 977517 Asp GTC tggcaccgaa atattttgtc 0 0 70.78 52.44 18.34 Both chr_10 8 7443641 7443712 Asp GTC acccaactaa attttttttg 0 0 70.78 52.44 18.34 Both chr_10 9 7445647 7445718 Asp GTC gaacaagcaa atattttatt 0 0 70.78 52.44 18.34 Both chr_2 24 55438912 55438983 Asp GTC aatcagcaaa cttttttttt 0 0 70.78 52.44 18.34 Both chr_2 52 72956025 72955954 Asp GTC tagcatcaaa ttttgttttt 0 0 70.78 52.44 18.34 Both chr_2 77 907233 907162 Asp GTC gtacaagcaa atattttttt 0 0 70.78 52.44 18.34 Both chr_3 32 63752932 63753003 Asp GTC cttcaattca ctttttaatt 0 0 70.78 52.44 18.34 Both chr_3 57 64518286 64518215 Asp GTC aagcaacaaa ttttttttgg 0 0 70.78 52.44 18.34 Both chr_3 60 62160035 62159964 Asp GTC ccatcaccaa tttatttttt 0 0 70.78 52.44 18.34 Both chr_7 12 50203421 50203492 Asp GTC caccatcgaa ttttcttttt 0 0 70.78 52.44 18.34 Both chr_9 15 54293241 54293312 Asp GTC ccccaacaaa tttttttaat 0 0 70.78 52.44 18.34 Both chr_9 16 54293842 54293913 Asp GTC taacacagtt atttcaactt 0 0 70.78 52.44 18.34 Both chr_9 20 56901056 56901127 Asp GTC aaccaaccaa tttattattt 0 0 70.78 52.44 18.34 Both chr_9 34 54700152 54700081 Asp GTC taacaacaaa cttctttttt 0 0 70.78 52.44 18.34 Both   chr_1 79 13014868 13014798 Cys GCA cggatttttt gattaataaa 0 0 62.16 36.94 25.22 Both chr_3 70 38389427 38389357 Cys GCA cggatttttt aatcaataaa 0 0 62.56 37.27 25.29 Both chr_8 9 17097756 17097826 Cys GCA cagatttttt gatcaataaa 0 0 62.56 37.27 25.29 Both scaffold_59 1 10439 10509 Cys GCA cggatttttt gatcaataaa 0 0 62.56 37.27 25.29 Both scaffold_3079 1 2362 2292 Cys GCA gatcggattt gacccacaaa 0 0 62.84 34.52 28.32 Both chr_4 35 67459318 67459247 Cys GCA ggacattaat acaggcttct 0 0 77.23 51.84 25.39 Both chr_6 42 43217540 43217469 Cys GCA acatcacaac ttctccgcat 0 0 77.23 51.84 25.39 Both chr_9 55 502918 502847 Cys GCA aatacacaag attcaatgtt 0 0 77.23 51.84 25.39 Both chr_4 57 50886730 50886659 Cys GCA aaagcaaaat tttttcaaat 0 0 77.43 52.20 25.23 Both chr_4 58 50861859 50861788 Cys GCA tgaaccaaag ttgctttgct 0 0 77.43 52.20 25.23 Both chr_3 5 4948563 4948634 Cys GCA atttcatcgt cctctataat 0 0 78.18 58.76 19.42 Both chr_1 90 4727378 4727307 Cys GCA tctcaacaaa ttttttgctt 0 0 79.11 55.29 23.82 Both chr_2 8 3940484 3940555 Cys GCA aatcaaatca atttattttt 0 0 79.11 55.29 23.82 Both   chr_1 66 51294230 51294158 Gln CTG atacaacaat gtctttttta 0 0 57.23 37.91 19.32 Eufind chr_1 82 11365086 11365015 Gln CTG tctcagcaaa gtttttgttt 0 0 67.68 49.02 18.66 Both chr_9 9 15160606 15160677 Gln CTG agtacatacc ttttttatat 0 0 70.83 50.67 20.16 Both chr_3 2 446592 446663 Gln CTG gaacacaaat tttttgtttc 0 0 71.08 51.14 19.94 Both chr_3 83 442378 442307 Gln CTG agcatcaaat cttcttttaa 0 0 71.08 51.14 19.94 Both chr_10 26 48075925 48075854 Gln CTG ggacatcaac ttttttaaca 0 0 71.31 51.51 19.80 Both chr_4 13 9790385 9790456 Gln CTG gggcatcaaa gatttttttt 0 0 71.56 51.98 19.58 Both chr_5 14 55117718 55117789 Gln CTG gtgcagcaaa tgttttttgc 0 0 71.56 51.98 19.58 Both chr_8 23 54792171 54792242 Gln CTG agacacgaat tttttcgtgg 0 0 71.56 51.98 19.58 Both chr_3 31 63686239 63686310 Gln CTG tagcacaaat ttttttatgc 0 0 71.93 52.34 19.59 Both chr_4 29 63491327 63491398 Gln CTG aaaaatcaaa attttttctc 0 0 71.93 52.34 19.59 Both chr_4 44 60014452 60014381 Gln CTG gaacaacaaa attttttcac 0 0 71.93 52.34 19.59 Both chr_1 88 5669691 5669620 Gln CTG agacagaaat attattttgt 0 0 74.02 54.43 19.59 Both scaffold_59 12 406776 406847 Gln TTG cgaaatgaca attttttctg 0 0 61.03 34.16 26.87 Both chr_3 52 68641015 68640944 Gln TTG ctcaacaaat tttttttttt 0 0 70.72 56.75 13.97 Both chr_4 64 11136171 11136100 Gln TTG acacataaat acttttttta 0 0 72.29 54.34 17.95 Both chr_4 66 11133661 11133590 Gln TTG tacataaaat actttctttt 0 0 72.63 54.69 17.94 Both chr_4 67 11131725 11131654 Gln TTG cacataaaat actttcattt 0 0 72.63 54.69 17.94 Both chr_4 68 11129553 11129482 Gln TTG cacataaaat acttttttat 0 0 72.63 54.69 17.94 Both chr_4 65 11135144 11135073 Gln TTG cacataaaat acttttttaa 0 0 73.26 50.95 22.31 Both chr_6 40 46068509 46068438 Gln TTG aacatcaatt attcttcatt 0 0 75.92 58.58 17.34 Both chr_1 4 1712841 1712912 Gln TTG tgacagaaat tttaatttcc 0 0 77.37 61.10 16.27 Both chr_4 17 51922489 51922560 Gln TTG aagcagaaat ttttttagct 0 0 77.37 61.10 16.27 Both chr_6 17 61865722 61865651 Gln TTG taaacaaatt tttttttgtt 0 0 77.77 61.50 16.27 Both   chr_10 15 55240712 55240783 Glu CTC agcacaagct attttttgtt 0 0 68.05 46.10 21.95 Both chr_3 4 2158237 2158309 Glu CTC gtctcacaaa tctttttttt 0 0 71.42 49.44 21.98 Both chr_7 28 62366080 62366152 Glu CTC acgcagcgaa ttttttttag 0 0 72.40 55.01 17.39 Both chr_3 55 66835671 66835599 Glu CTC cataccaact accttttttt 0 0 74.01 56.07 17.94 Both chr_1 17 18739297 18739369 Glu CTC cttaacaaaa atatttttgc 0 0 76.98 53.44 23.54 Both chr_3 82 456478 456406 Glu CTC ggcatcaact attttttttt 0 0 76.98 53.44 23.54 Both chr_1 34 60517142 60517214 Glu CTC acaacacaaa ttttttaatc 0 0 79.07 55.53 23.54 Both chr_1 6 2701593 2701665 Glu CTC tttttcaata tctctttttt 0 0 79.07 55.53 23.54 Both chr_1 80 12187969 12187897 Glu CTC ttgggcaact tttttttttc 0 0 79.07 55.53 23.54 Both chr_2 15 9602986 9603058 Glu CTC agcacaagaa atttttttgc 0 0 79.07 55.53 23.54 Both chr_2 56 67377166 67377094 Glu CTC actaacaaaa ttttttattt 0 0 79.07 55.53 23.54 Both chr_2 72 9571569 9571497 Glu CTC aatgcaacag tttttttttt 0 0 79.07 55.53 23.54 Both chr_3 23 59726443 59726515 Glu CTC ctaataacat gctttttgtt 0 0 79.07 55.53 23.54 Both chr_3 6 5187583 5187655 Glu CTC atctcacaaa actttttgtt 0 0 79.07 55.53 23.54 Both chr_3 76 9188153 9188081 Glu CTC taagcaacaa tttattttta 0 0 79.07 55.53 23.54 Both chr_4 38 65539963 65539891 Glu CTC cggtcagaaa tttctttttt 0 0 79.07 55.53 23.54 Both chr_4 7 1427340 1427412 Glu CTC acttccagcc accttttgtt 0 0 79.07 55.53 23.54 Both chr_4 75 5196240 5196168 Glu CTC gttgtcagct tgtttttctt 0 0 79.07 55.53 23.54 Both chr_7 29 62395544 62395616 Glu CTC ttccaacatc atatttttat 0 0 79.07 55.53 23.54 Both chr_7 36 59539425 59539353 Glu CTC aggattaaaa taacattttg 0 0 79.07 55.53 23.54 Both chr_9 28 56908688 56908616 Glu CTC gttgcaacca tttttttaat 0 0 79.07 55.53 23.54 Both chr_9 40 52546082 52546010 Glu CTC caattcgaaa ttttttgtat 0 0 79.07 55.53 23.54 Both chr_9 43 48533636 48533564 Glu CTC tttcacacta tttttccttc 0 0 79.07 55.53 23.54 Both chr_10 11 22334839 22334910 Glu TTC ttctttttgg gatacttatt 0 0 42.68 30.01 12.67 Eufind scaffold_59 28 14142 14070 Glu TTC gtctagtgat gggagtatta 0 0 52.15 29.02 23.13 tRNAscan scaffold_2753 1 934 1005 Glu TTC ttgctttttg ggtacttatt 0 0 61.49 41.65 19.84 Both chr_4 27 59632604 59632677 Glu TTC aggcatcaaa tatatattat 0 0 65.35 41.10 24.25 Both chr_5 13 53184011 53184084 Glu TTC aggacatcaa tatttctttt 0 0 65.35 41.10 24.25 Both chr_1 12 5876614 5876687 Glu TTC ctatcggtaa tctttttttt 0 0 65.74 41.84 23.90 Both chr_1 52 65097342 65097269 Glu TTC caagcacaga catttttaaa 0 0 65.74 41.84 23.90 Both chr_2 2 1948086 1948159 Glu TTC attcatctaa taaatttttt 0 0 65.74 41.84 23.90 Both chr_5 7 3774765 3774838 Glu TTC tcatatcaaa ggtatttttg 0 0 65.74 41.84 23.90 Both chr_6 15 58820297 58820370 Glu TTC ggagcacaaa tcttttttgt 0 0 65.74 41.84 23.90 Both chr_7 6 5828192 5828265 Glu TTC tatacacaaa tatttttatt 0 0 65.74 41.84 23.90 Both chr_8 33 51177587 51177514 Glu TTC cagcatcaaa ctttttattt 0 0 65.74 41.84 23.90 Both chr_8 5 3927164 3927237 Glu TTC aagcaacagt atctttttgc 0 0 65.74 41.84 23.90 Both   chr_1 32 59611709 59611779 Gly CCC gcacagcaaa cacaagctag 0 0 68.50 35.50 33.00 Both chr_1 51 65622804 65622734 Gly CCC aaatatataa aattttttgc 0 0 69.01 36.42 32.59 Both chr_2 50 76215015 76214945 Gly CCC gagcaattaa ctcaacaacg 0 0 69.01 36.42 32.59 Both chr_2 64 58219952 58219882 Gly CCC taccatcatg tctgcgcttt 0 0 69.01 36.42 32.59 Both chr_4 12 6879044 6879114 Gly CCC catcgtctga ctattaatat 0 0 69.01 36.42 32.59 Both chr_8 15 45747633 45747703 Gly CCC aatcaaagaa cacatcttct 0 0 69.01 36.42 32.59 Both chr_2 10 4340747 4340817 Gly GCC atccatcaaa ttttttgtat 0 0 55.57 43.04 12.53 Eufind chr_7 14 51436154 51436224 Gly GCC tagaaaaaca ttgttttgtt 0 0 64.58 49.99 14.59 Eufind chr_1 7 4578882 4578952 Gly GCC catcagcaaa atttttttgt 0 0 64.94 50.41 14.53 Eufind chr_1 45 70770844 70770774 Gly GCC aactatgaca aatttttttt 0 0 67.59 49.68 17.91 Both scaffold_59 21 301645 301575 Gly GCC gttcaatgta agcttaattt 0 0 69.58 44.57 25.01 Both scaffold_59 25 18069 17999 Gly GCC gttcaatgta agcttaattt 0 0 69.58 44.57 25.01 Both chr_1 19 21546379 21546449 Gly GCC ggacatcgaa attttttagt 0 0 71.56 51.49 20.07 Both chr_1 40 70173336 70173406 Gly GCC ctcgtaaaaa acgtttttgt 0 0 71.56 51.49 20.07 Both chr_1 44 73435151 73435221 Gly GCC cacattcgta tgaatttttc 0 0 71.56 51.49 20.07 Both chr_1 56 61758162 61758092 Gly GCC tagcacagca tttttccttt 0 0 71.56 51.49 20.07 Both chr_1 65 51555203 51555133 Gly GCC agacacaaaa aaacttattt 0 0 71.56 51.49 20.07 Both chr_1 81 11966215 11966145 Gly GCC caacacgaaa tctctttttt 0 0 71.56 51.49 20.07 Both chr_10 25 51261470 51261400 Gly GCC tgcatcaaaa tctttttatg 0 0 71.56 51.49 20.07 Both chr_10 3 2740411 2740481 Gly GCC taacaaaaca tgatttttat 0 0 71.56 51.49 20.07 Both chr_10 33 3800475 3800405 Gly GCC atacatcgaa gtcttttatt 0 0 71.56 51.49 20.07 Both chr_10 4 2741640 2741710 Gly GCC aaacacaaca atattatttg 0 0 71.56 51.49 20.07 Both chr_3 81 3831700 3831630 Gly GCC cttacaagaa tttttttttt 0 0 71.56 51.49 20.07 Both chr_4 49 56081727 56081657 Gly GCC cataaaacaa attattttta 0 0 71.56 51.49 20.07 Both chr_4 70 7593123 7593053 Gly GCC ttccatctaa tttttggtgc 0 0 71.56 51.49 20.07 Both chr_6 30 51528453 51528383 Gly GCC aatcattcga ttattgtttt 0 0 71.56 51.49 20.07 Both chr_6 31 51528292 51528222 Gly GCC aatcatacca ttaatatttt 0 0 71.56 51.49 20.07 Both chr_7 40 51578489 51578419 Gly GCC tagccaaata tcttttttta 0 0 71.56 51.49 20.07 Both chr_8 22 54047184 54047254 Gly GCC agcaaaacaa ttttccttgt 0 0 71.56 51.49 20.07 Both chr_9 8 7385586 7385656 Gly GCC agcaaacaag tggatttttt 0 0 71.56 51.49 20.07 Both chr_5 25 60567119 60567048 Gly TCC atcataacac tgcaattttc 0 0 66.74 42.93 23.81 Both chr_1 36 63245206 63245277 Gly TCC gtgaacaaca atttttttat 0 0 74.33 49.53 24.80 Both chr_2 55 70747064 70746993 Gly TCC aaccaacaag atttttggcc 0 0 74.33 49.53 24.80 Both chr_2 9 4063786 4063857 Gly TCC atcatcaaca tctttttgca 0 0 74.33 49.53 24.80 Both chr_3 33 66544356 66544427 Gly TCC actcaacgca gagttttaat 0 0 74.33 49.53 24.80 Both chr_7 4 2152246 2152317 Gly TCC tagcatccaa ttttttttct 0 0 74.33 49.53 24.80 Both chr_7 5 2156345 2156416 Gly TCC gtacgtgcaa ttttttttcc 0 0 74.33 49.53 24.80 Both chr_8 35 48330452 48330381 Gly TCC ttgcatcaaa agttcttttt 0 0 74.33 49.53 24.80 Both chr_9 39 52755596 52755525 Gly TCC taacacaaaa atcttttttt 0 0 74.33 49.53 24.80 Both chr_6 1 38753601 38753672 Gly TCC ttccatcaaa atttgttcac 0 0 75.78 52.05 23.73 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr_7 10 18689218 18689291 His ATG gttacgaaag cacgatcttc 0 0 77.66 54.64 23.02 Both scaffold_3177 1 510 437 His GTG tggataaggg catcgcatta 0 0 52.58 33.34 19.24 Both scaffold_506 1 1934 2007 His GTG tggataaggg catcgcatta 0 0 52.58 33.34 19.24 Both scaffold_59 13 414401 414474 His GTG tggataaggg catcgcatta 0 0 52.58 33.34 19.24 Both scaffold_59 23 85195 85122 His GTG tggataaggg catcgcatta 0 0 52.58 33.34 19.24 Both chr_4 9 3069962 3070033 His GTG aaacatcaaa gttgtagttt 0 0 59.32 33.36 25.96 Both chr_3 15 15904191 15904262 His GTG gtcacaaggt agtatctagt 0 0 62.38 35.43 26.95 Both chr_1 55 61897981 61897910 His GTG gtacaacaaa aattcatttt 0 0 62.63 35.93 26.70 Both chr_1 54 62174730 62174659 His GTG catcataaaa agtttttttt 0 0 63.70 36.75 26.95 Both chr_1 63 53265599 53265528 His GTG aacaaccaaa atgttttgtc 0 0 63.70 36.75 26.95 Both chr_10 1 1034939 1035010 His GTG ataacacaaa catttcattt 0 0 63.70 36.75 26.95 Both chr_10 2 1035292 1035363 His GTG atgacacgaa acgtggagac 0 0 63.70 36.75 26.95 Both chr_2 43 74398505 74398576 His GTG atcaacaaat catttgtttt 0 0 63.70 36.75 26.95 Both chr_10 18 59005273 59005344 His GTG tcacaacaaa catatatttt 0 0 63.95 37.25 26.70 Both chr_2 49 77695205 77695134 His GTG tgccaataaa tgtttgtttt 0 0 63.95 37.25 26.70 Both chr_2 37 68773527 68773598 His GTG actcaagaaa ttgatttctt 0 0 67.53 40.83 26.70 Both   chr_2 29 63094179 63094252 Ile AAT taactcaatt aatatttatt 0 0 74.33 51.62 22.71 Both chr_2 42 74250948 74251021 Ile AAT cagacaaata tattcttttt 0 0 82.24 59.52 22.72 Both chr_2 63 58895705 58895632 Ile AAT cattcaacaa atatttgcat 0 0 82.24 59.52 22.72 Both chr_3 37 70313775 70313848 Ile AAT tatatcaaat aaattaactt 0 0 82.24 59.52 22.72 Both chr_3 63 57654547 57654474 Ile AAT ttagcgcatt tttttttcca 0 0 82.24 59.52 22.72 Both chr_4 21 54018202 54018275 Ile AAT aaagataaaa tttttttctt 0 0 82.24 59.52 22.72 Both chr_4 22 54026275 54026348 Ile AAT ataaccaact ttttttcttc 0 0 82.24 59.52 22.72 Both chr_5 1 324779 324852 Ile AAT agaacaaatt aattttattt 0 0 82.24 59.52 22.72 Both chr_6 32 51501620 51501547 Ile AAT acctcaaatt aaatttattt 0 0 82.24 59.52 22.72 Both chr_6 33 50936277 50936204 Ile AAT acacataatt aatgtttttt 0 0 82.24 59.52 22.72 Both chr_6 35 49173649 49173576 Ile AAT ctcacaagtt attttttttg 0 0 82.24 59.52 22.72 Both chr_7 2 2093074 2093147 Ile AAT aaatccaagt gaaaaacctt 0 0 82.24 59.52 22.72 Both chr_7 30 63633165 63633092 Ile AAT cacaagctct agttttttct 0 0 82.24 59.52 22.72 Both chr_8 1 438355 438428 Ile AAT aaaacaaatt aaatttattc 0 0 82.24 59.52 22.72 Both chr_8 44 927386 927313 Ile AAT accctcaact tgtatatgtg 0 0 82.24 59.52 22.72 Both chr_9 38 53182724 53182651 Ile AAT aacagcaaat ctttaatttt 0 0 82.24 59.52 22.72 Both chr_3 48 69698630 69698557 Ile AAT atatgtaaat tttttttgtt 0 0 83.36 57.30 26.06 Both chr_3 1 144107 144180 Ile TAT tatatgtgaa ttttttgtaa 0 0 80.32 63.96 16.36 Both chr_3 49 69507773 69507700 Ile TAT ttaaccagct acggctcttt 0 0 80.93 65.35 15.58 Both chr_1 21 23164266 23164339 Ile TAT acaacataaa ttttatttta 0 0 85.40 69.82 15.58 Both chr_3 10 10036730 10036803 Ile TAT agtaggagca ttttttttat 0 0 86.19 71.06 15.13 Both chr_9 13 50079660 50079733 Ile TAT cctttcaaca tttttttgct 0 0 86.19 71.06 15.13 Both   chr_2 31 64664645 64664724 Leu AAG tatatcagaa aatacttttt 0 0 39.93 26.20 13.73 Both chr_4 16 49848467 49848547 Leu AAG aggcacatct gcattttttt 0 0 67.02 39.02 28.00 Both chr_4 11 6805776 6805856 Leu AAG atgccaactc gtcttttttc 0 0 69.38 41.05 28.33 Both chr_1 35 61683543 61683623 Leu AAG aacaaaacat ttttttgacc 0 0 69.68 40.32 29.36 Both chr_1 95 2080515 2080435 Leu AAG aatcacacaa ttattgtttt 0 0 69.68 40.32 29.36 Both chr_2 32 66314241 66314321 Leu AAG ataggccaaa ttgttttttc 0 0 69.68 40.32 29.36 Both chr_2 35 67529780 67529860 Leu AAG tggacatcaa tatttttttc 0 0 69.68 40.32 29.36 Both chr_2 48 77636827 77636907 Leu AAG gcgaacaaca ttttttttcc 0 0 69.68 40.32 29.36 Both chr_3 16 19699274 19699354 Leu AAG gactccaaat tattttttta 0 0 69.68 40.32 29.36 Both chr_3 39 72121222 72121302 Leu AAG cggccatcaa taattatgtt 0 0 69.68 40.32 29.36 Both chr_3 46 72089427 72089347 Leu AAG taaccattaa gttttttttg 0 0 69.68 40.32 29.36 Both chr_3 56 66349639 66349559 Leu AAG aatatcaaaa tattttttaa 0 0 69.68 40.32 29.36 Both chr_6 2 40821722 40821802 Leu AAG aatctcaata atttatatga 0 0 69.68 40.32 29.36 Both chr_7 20 58466390 58466470 Leu AAG cacacatcaa tatttttttc 0 0 69.68 40.32 29.36 Both chr_7 34 60893688 60893608 Leu AAG tcaacaaaaa gagtttttga 0 0 69.68 40.32 29.36 Both chr_10 13 54124656 54124736 Leu CAA ctttcaagat atttatttca 0 0 34.61 21.65 12.96 Eufind scaffold_59 19 420266 420186 Leu CAA ctttcaagat taatacggag 0 0 55.48 28.76 26.72 Both chr_1 22 24815479 24815561 Leu CAA tttcgttgaa atttttttgt 0 0 72.97 44.16 28.81 Both chr_4 36 67229444 67229361 Leu CAA aaatatgtag attattttta 0 0 73.35 45.37 27.98 Both chr_5 4 1414514 1414597 Leu CAA cacacaaaag caaataacta 0 0 73.35 45.37 27.98 Both chr_1 46 69737075 69736992 Leu CAA taataaaaag tgttttttat 0 0 73.73 46.10 27.63 Both chr_1 93 2971054 2970971 Leu CAA aacatcaaat tatttttctt 0 0 73.73 46.10 27.63 Both chr_10 23 52325014 52324931 Leu CAA ggacatcaca gtttttattt 0 0 73.73 46.10 27.63 Both chr_2 14 8474398 8474481 Leu CAA caacatcaaa ttttttcttt 0 0 73.73 46.10 27.63 Both chr_4 52 53566106 53566026 Leu CAG cacccaaaat ttaattttac 0 0 64.38 35.68 28.70 Both chr_1 39 68960417 68960497 Leu CAG aatattcaat ttttttttta 0 0 66.83 38.13 28.70 Both chr_1 59 57435937 57435857 Leu CAG gttgcaacat tttactttta 0 0 68.57 39.87 28.70 Both chr_10 12 53536098 53536178 Leu CAG ttgcataaaa tatatttttt 0 0 68.57 39.87 28.70 Both chr_2 51 74206557 74206477 Leu CAG aaagcaacat aactattttt 0 0 68.57 39.87 28.70 Both chr_3 36 67271941 67272021 Leu CAG ctgtcatcaa atttttttca 0 0 68.57 39.87 28.70 Both chr_3 7 6405829 6405909 Leu CAG catcacaaat attttttttc 0 0 68.57 39.87 28.70 Both chr_6 37 48554523 48554443 Leu CAG atgaacataa atatttttga 0 0 68.57 39.87 28.70 Both chr_7 3 2097151 2097231 Leu CAG aaacacaaat tttttaatct 0 0 68.57 39.87 28.70 Both chr_9 41 52104027 52103947 Leu CAG taaacattta acacacattt 0 0 68.57 39.87 28.70 Both chr_2 75 4221912 4221825 Leu CAG agacaagaac gagcaatgac 4221874 4221861 43.25 28.60 14.65 Eufind chr_5 26 58839631 58839550 Leu TAA aaacattgca tattttttat 0 0 60.06 29.79 30.27 Eufind chr_3 42 74124333 74124416 Leu TAA aatgaaaaca tttttttctt 0 0 67.68 35.23 32.45 Both chr_6 7 50200774 50200856 Leu TAA tacatcttca tttttttata 0 0 69.84 34.87 34.97 Both chr_8 37 44826474 44826392 Leu TAA aatataaagt atatattttt 0 0 72.30 37.04 35.26 Both chr_2 36 68767079 68767158 Leu TAG tttcgagtca ttctcgaaaa 0 0 44.97 11.33 33.64 Both chr_4 62 16795456 16795377 Leu TAG ttttaaatta ttctcgaaaa 0 0 46.15 25.37 20.78 Eufind scaffold_59 7 206004 206083 Leu TAG tttaaaatta ttctcgaaaa 0 0 58.92 26.12 32.80 Both chr_6 41 44342874 44342795 Leu TAG aaacaaatac gtatttcttt 0 0 65.94 39.06 26.88 Both chr_3 41 74019068 74019147 Leu TAG aaacaccaaa gctttttatt 0 0 68.72 40.52 28.20 Both chr_4 56 51009362 51009283 Leu TAG agtataatat atttttttga 0 0 68.72 40.52 28.20 Both chr_9 14 51323099 51323178 Leu TAG acacaattgt catttttttc 0 0 68.72 40.52 28.20 Both chr_9 56 502111 502032 Leu TAG taaaccagta ttgttttttt 0 0 68.72 40.52 28.20 Both chr_3 53 68237263 68237184 Leu TAG aacatcaaat tcattttttt 0 0 69.35 38.90 30.45 Both   chr_7 16 52154013 52154085 Lys CTT tattacataa catagttaaa 0 0 45.77 40.40 5.37 Eufind chr_1 20 22872446 22872518 Lys CTT aatcaacttg ttttttttct 0 0 83.73 61.76 21.97 Both chr_1 27 55132718 55132790 Lys CTT gcacaactaa ttgtaaattt 0 0 83.73 61.76 21.97 Both chr_2 27 57450425 57450497 Lys CTT cagtcagaaa catgatgttt 0 0 83.73 61.76 21.97 Both chr_2 66 55741696 55741624 Lys CTT tatcagcaca attatttcat 0 0 83.73 61.76 21.97 Both chr_3 27 61672285 61672357 Lys CTT caatatactt ctcactttat 0 0 83.73 61.76 21.97 Both chr_3 28 62551992 62552064 Lys CTT ggtcataatt tgattttagt 0 0 83.73 61.76 21.97 Both chr_3 35 67139863 67139935 Lys CTT ataaatatca ttgtttttta 0 0 83.73 61.76 21.97 Both chr_5 24 62097957 62098029 Lys CTT taccatgtag tttaattttt 0 0 83.73 61.76 21.97 Both chr_5 46 442723 442651 Lys CTT aaacaattaa tttttattat 0 0 83.73 61.76 21.97 Both chr_7 17 52670045 52670117 Lys CTT aaaaaaaata tttgctgtct 0 0 83.73 61.76 21.97 Both chr_8 18 49244998 49245070 Lys CTT tgagcactaa ttttattttt 0 0 83.73 61.76 21.97 Both chr_8 34 49758874 49758802 Lys CTT taacaaccaa catttttttt 0 0 83.73 61.76 21.97 Both chr_8 46 582696 582624 Lys CTT caccagccaa cttttggttt 0 0 83.73 61.76 21.97 Both chr_9 30 55770484 55770412 Lys CTT gaaacaaact atttttaaat 0 0 83.73 61.76 21.97 Both chr_9 31 55358243 55358171 Lys CTT cactcacaaa ttgtttttgt 0 0 83.73 61.76 21.97 Both chr_9 46 41100804 41100732 Lys CTT aaaataaatt agtttttttt 0 0 83.73 61.76 21.97 Both chr_2 26 56959287 56959359 Lys CTT atttacgtga ttttttttct 0 0 84.38 62.40 21.98 Both chr_8 29 54317872 54317802 Lys TTT gatcaaagtt acttaatact 0 0 35.29 22.79 12.50 Eufind chr_2 16 13679343 13679414 Lys TTT tgtcatatta tttttgttta 0 0 82.87 61.60 21.27 Both chr_8 7 7595261 7595332 Lys TTT tgtgcaccaa tttgagcatt 0 0 86.59 59.69 26.90 Both chr_10 28 42866114 42866043 Lys TTT agaaacagtt tattttagtt 0 0 86.68 59.76 26.92 Both chr_2 58 65508140 65508069 Lys TTT caacagacga ctttagtcgt 0 0 86.68 59.76 26.92 Both chr_3 38 71920032 71920103 Lys TTT cagtgtcctg tttccttttt 0 0 86.68 59.76 26.92 Both chr_4 15 12420834 12420905 Lys TTT tttcgttcca ttagttttgc 0 0 86.68 59.76 26.92 Both chr_10 30 5480450 5480378 Lys TTT attaccagta tttttcttct 0 0 88.46 62.23 26.23 Both chr_6 5 46999123 46999195 Lys TTT taaaaaataa tcttttaatt 0 0 90.30 65.90 24.40 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr_10 31 4094646 4094574 Met CAT tccctgttaa cgggaatggg 0 0 32.74 22.01 10.73 Eufind chr_3 72 20842595 20842522 Met CAT tcccagttaa cgcgaacggg 0 0 44.19 34.88 9.31 Both chr_4 71 7356680 7356608 Met CAT gtgataaatt ggtaggtaga 0 0 55.64 35.36 20.28 Both chr_3 11 11460346 11460417 Met CAT agaatcaaac caaatttgga 0 0 56.24 28.69 27.55 Both scaffold_2957 1 1898 1825 Met CAT agatccgatt tctgacctgc 0 0 56.91 31.60 25.31 Both chr_9 10 35228985 35229057 Met CAT actcagcttg aaaccgcccc 0 0 57.72 27.72 30.00 Both chr_9 48 7506057 7505986 Met CAT aaacatcaaa gaattttttg 0 0 57.85 37.57 20.28 Both chr_3 19 38374887 38374960 Met CAT tccctgttaa cgcgaacggg 0 0 58.29 43.94 14.35 Both scaffold_59 20 416554 416481 Met CAT tccctgttaa cgcgaacggg 0 0 58.29 43.94 14.35 Both scaffold_59 2 17548 17621 Met CAT ggccctacag ttagcagtcc 0 0 61.45 34.79 26.66 Both chr_9 6 6102311 6102382 Met CAT agcatcaaac gaattctctt 0 0 67.42 38.88 28.54 Both chr_4 72 6973585 6973514 Met CAT tgtcacaaac atttttttta 0 0 68.19 40.29 27.90 Both chr_5 6 2057544 2057615 Met CAT acacacaaaa gttttcttat 0 0 68.19 40.29 27.90 Both chr_4 26 59225429 59225500 Met CAT aacaccaacc gaatttttat 0 0 68.74 41.24 27.50 Both chr_6 3 46215778 46215849 Met CAT gtaaacgtag tccgtttttg 0 0 68.74 41.24 27.50 Both chr_10 10 12563241 12563312 Met CAT tagcacagcc tccttttttt 0 0 68.81 41.37 27.44 Both chr_4 1 933320 933391 Met CAT tgatacaaag cgtttttgtg 0 0 68.81 41.37 27.44 Both chr_4 28 61411605 61411676 Met CAT aaacacaaag aatttgtttt 0 0 68.81 41.37 27.44 Both chr_9 47 7511166 7511095 Met CAT cttcaacaac agttttagtg 0 0 68.81 41.37 27.44 Both chr_9 49 6032055 6031984 Met CAT gacgccaaac tttttttttg 0 0 68.81 41.37 27.44 Both chr_2 5 2891691 2891777 Met CAT aagcatcaat ctttttactc 2891729 2891741 60.69 40.59 20.10 Both chr_2 6 2906258 2906344 Met CAT aaacaacaaa ctttttactc 2906296 2906308 60.84 40.73 20.11 Both chr_1 92 3191201 3191114 Met CAT agagcaaaaa cgcccaaaga 3191163 3191150 56.31 36.20 20.11 Both chr_1 24 49462935 49463022 Met CAT tagaacaaat attttttgtc 49462973 49462986 61.95 41.84 20.11 Both chr_8 21 52564655 52564741 Met CAT aacaccaaaa gtgttttttt 52564693 52564705 60.84 40.73 20.11 Both chr_9 17 54373049 54373134 Met CAT gtatcgcaac aattaatttg 54373087 54373098 61.56 41.45 20.11 Both chr_9 37 54642526 54642441 Met CAT gtatcacaac aatctatttg 54642488 54642477 61.56 41.45 20.11 Both chr_9 36 54650457 54650373 Met CAT gtatcacaac aataaattgg 54650419 54650409 61.43 41.32 20.11 Both chr_9 35 54651718 54651634 Met CAT gtatcacaac aattactttg 54651680 54651670 61.29 41.18 20.11 Both chr_6 14 56026684 56026770 Met CAT cgagcacagc atttttttcc 56026722 56026734 62.47 42.36 20.11 Both chr_1 29 56929449 56929534 Met CAT tacaacaagc atctttttgc 56929487 56929498 61.20 41.09 20.11 Both chr_4 43 61179047 61178961 Met CAT atgcatcaaa ttttttcctt 61179009 61178997 63.34 43.24 20.10 Both chr_1 50 65780849 65780759 Met CAT ttacaagaac gagcgatgac 65780811 65780797 44.39 26.07 18.32 Both chr_4 37 66636035 66635949 Met CAT catcaacatt gctttttttt 66635997 66635985 61.83 41.72 20.11 Both chr_3 8 7159257 7159341 Met CAT ttaccacaac aataatttgg 7159295 7159305 60.65 40.55 20.10 Both chr_2 40 73730100 73730187 Met CAT tatcacaaaa aatttttttc 73730138 73730151 60.96 40.85 20.11 Both chr_2 13 8064303 8064393 Met CAT gtacaaaaat gagcgatgac 8064341 8064357 60.49 40.38 20.11 Both   chr_3 17 28858296 28858368 Phe GAA acaagaaagg cagaaaaaaa 0 0 67.75 43.53 24.22 Both chr_3 20 38396287 38396359 Phe GAA acaagaaagg cagaaaaaaa 0 0 67.75 43.53 24.22 Both chr_3 69 38400215 38400143 Phe GAA acaataaatg cagaaaaaag 0 0 67.75 43.53 24.22 Both scaffold_1122 1 5100 5028 Phe GAA acaataaatg cagaaaaaag 0 0 67.75 43.53 24.22 Both scaffold_59 18 506689 506617 Phe GAA acaagaaagg cagaaaaaaa 0 0 67.75 43.53 24.22 Both scaffold_59 24 26668 26596 Phe GAA acaagaaagg cagaaaaaaa 0 0 67.75 43.53 24.22 Both chr_3 45 73620630 73620558 Phe GAA acaaataaaa ctcgttttgt 0 0 69.74 46.52 23.22 Both chr_3 26 61660068 61660140 Phe GAA tgctatcaga ttttgtttta 0 0 75.31 50.45 24.86 Both chr_2 11 4775991 4776063 Phe GAA tctctatcaa aaaaatgaat 0 0 77.43 54.21 23.22 Both chr_2 25 55797029 55797101 Phe GAA ttatcacata aattatttac 0 0 77.43 54.21 23.22 Both chr_2 74 4846384 4846312 Phe GAA ctctcactaa cttgattgat 0 0 77.43 54.21 23.22 Both chr_3 47 71872673 71872601 Phe GAA ggcaacaaaa attatttttt 0 0 77.43 54.21 23.22 Both chr_3 59 62536201 62536129 Phe GAA gtataacaat tatagttttt 0 0 77.43 54.21 23.22 Both chr_4 18 52282784 52282856 Phe GAA taaatcaata ttttttttgt 0 0 77.43 54.21 23.22 Both chr_4 24 56904940 56905012 Phe GAA aaaccatcaa atatttttat 0 0 77.43 54.21 23.22 Both chr_6 4 46502221 46502293 Phe GAA gcagcataaa ttttttttgc 0 0 77.43 54.21 23.22 Both chr_6 9 52342685 52342757 Phe GAA tgtaacggtt agcttattag 0 0 77.43 54.21 23.22 Both chr_7 1 589248 589320 Phe GAA taccactgaa ttttttcatc 0 0 77.43 54.21 23.22 Both chr_7 31 62648959 62648887 Phe GAA aaacaaataa atataatttt 0 0 77.43 54.21 23.22 Both chr_9 19 56617021 56617093 Phe GAA aaaaacgtaa tttactttcc 0 0 77.43 54.21 23.22 Both   chr_5 18 57853823 57853893 Pro AGG taacagacca acctgacaaa 0 0 36.64 25.78 10.86 Eufind chr_8 12 40901336 40901407 Pro AGG aaacaacaaa tgttttagtt 0 0 65.23 43.46 21.77 Both chr_10 22 60738925 60738854 Pro AGG tgacacgtaa cctttcgttt 0 0 68.30 40.43 27.87 Both chr_10 24 52204907 52204836 Pro AGG cataacaaat ttttttttca 0 0 71.75 43.88 27.87 Both chr_3 80 4649865 4649794 Pro AGG aaacatcaaa ttaattttta 0 0 71.75 43.88 27.87 Both chr_4 33 67741657 67741728 Pro AGG aaccaacaca agtatttctt 0 0 71.75 43.88 27.87 Both chr_5 12 48102242 48102313 Pro AGG gacagtaaac caacaatatt 0 0 71.75 43.88 27.87 Both chr_5 20 57856091 57856162 Pro AGG aaaacaaata taattttttt 0 0 71.75 43.88 27.87 Both chr_5 23 60416295 60416366 Pro AGG aaacaacaaa tattttttgc 0 0 71.75 43.88 27.87 Both chr_5 32 4368284 4368213 Pro AGG taaacaaaaa cttagttatt 0 0 71.75 43.88 27.87 Both chr_8 14 45241048 45241119 Pro AGG tggcatctaa cttttttata 0 0 71.75 43.88 27.87 Both chr_8 16 48193379 48193450 Pro AGG tatcatcaaa catatttgtt 0 0 71.75 43.88 27.87 Both chr_5 17 57852947 57853018 Pro AGG gactagactt acctgaaaat 0 0 73.78 45.52 28.26 Both chr_5 19 57855713 57855784 Pro AGG gagcacagct atctaaatcc 0 0 73.78 45.52 28.26 Both chr_5 2 353283 353354 Pro CGG accaacagtt cattttgcct 0 0 68.11 40.71 27.40 Both chr_2 53 72943049 72942978 Pro CGG ccaattgatt catttttctt 0 0 69.81 45.03 24.78 Both chr_5 45 745219 745148 Pro CGG aaagcatagt taatttttta 0 0 74.11 46.34 27.77 Both chr_6 12 52996245 52996316 Pro CGG agaacaagtt attttattat 0 0 74.11 46.34 27.77 Both chr_7 23 59151501 59151572 Pro CGG aacaccaaat aatttgcttt 0 0 74.11 46.34 27.77 Both chr_8 2 468672 468743 Pro CGG accaacaatt caataggcat 0 0 74.11 46.34 27.77 Both chr_8 45 881871 881800 Pro CGG accgtcagtt tataatgttt 0 0 74.11 46.34 27.77 Both chr_1 71 21485235 21485161 Pro TGG agcactttta tgtggtattc 0 0 51.54 25.85 25.69 Both scaffold_2165 1 1346 1420 Pro TGG gggggggaga tgtggtattc 0 0 54.34 25.42 28.92 Both scaffold_59 4 111716 111789 Pro TGG aatttggaaa cctattaatt 0 0 60.50 28.44 32.06 Both chr_1 31 58884797 58884868 Pro TGG ttcgcaaaca ttttttactc 0 0 73.73 45.85 27.88 Both chr_2 45 75841331 75841402 Pro TGG aggcataaca ctttttttcc 0 0 73.73 45.85 27.88 Both chr_4 41 63562089 63562018 Pro TGG ctcaccatca atttttttgt 0 0 73.73 45.85 27.88 Both chr_5 28 55684475 55684404 Pro TGG attcacaaca actttttgta 0 0 73.73 45.85 27.88 Both chr_5 29 55684322 55684251 Pro TGG taagcaaaca actgttttta 0 0 73.73 45.85 27.88 Both chr_10 21 60909469 60909540 Pro TGG ttctcaaacc tcacaccgtc 0 0 74.23 46.82 27.41 Both chr_10 5 3823587 3823658 Pro TGG aaacgcaaca ttttttgttt 0 0 74.23 46.82 27.41 Both chr_7 26 59846312 59846383 Pro TGG tgcaaacacc ttttttatta 0 0 74.23 46.82 27.41 Both   chr_4 14 9969496 9969566 Pseudo ??? gcgcgcgaaa aatttaaaca 0 0 20.58 28.68 -8.10 Eufind chr_5 43 1823105 1823037 Pseudo ??? ttgcgaaagg aatttaaaca 0 0 21.60 21.36 0.24 Eufind chr_3 9 8969383 8969453 Pseudo ??? ttccgcgaaa aatttaaaca 0 0 21.87 33.26 -11.39 Eufind chr_3 13 15036922 15036995 Pseudo ??? tatacacaga cgatgtagtc 0 0 22.77 28.64 -5.87 Eufind chr_2 71 9592508 9592438 Pseudo ??? ctatgtgaaa aatttaaata 0 0 23.00 31.93 -8.93 Eufind chr_10 27 47127370 47127300 Pseudo ??? tgccgcgaaa aatttaaaca 0 0 23.88 32.16 -8.28 Eufind chr_3 78 5937093 5937025 Pseudo ??? tagcgaaagg aatttaaaca 0 0 24.76 29.60 -4.84 Eufind chr_2 1 1160819 1160889 Pseudo ??? gccgcgatta aatttaaaca 0 0 25.22 34.50 -9.28 Eufind chr_4 50 54834256 54834177 Pseudo ??? accagcctaa ttggtctttg 0 0 25.29 -0.77 26.06 Eufind chr_8 17 49230811 49230890 Pseudo ??? accagcctaa ttggtctttg 0 0 25.29 -0.77 26.06 Eufind chr_3 14 15852514 15852586 Pseudo ??? tccatgttaa tgcaaatgag 0 0 26.49 29.90 -3.41 Eufind chr_2 21 46750196 46750265 Pseudo ??? actgcgaaag aatttaaaca 0 0 27.05 24.20 2.85 Eufind chr_9 11 40764780 40764848 Pseudo ??? ttgcgaaagg aatttaaaca 0 0 27.41 23.92 3.49 Eufind chr_4 69 7959969 7959899 Pseudo AGC attgtcaaag aatttaaaca 0 0 20.48 28.96 -8.48 Eufind chr_1 73 17011740 17011667 Pseudo AGC tacagcggaa aattaaggct 0 0 20.88 37.46 -16.58 Eufind chr_3 21 58438850 58438921 Pseudo AGC caaagcaaaa aatttaaaca 0 0 21.42 41.61 -20.19 Eufind chr_2 19 23745514 23745585 Pseudo AGC atatgcgaaa aattaaaaag 0 0 22.15 37.71 -15.56 Eufind chr_9 24 59197336 59197265 Pseudo AGC atctgcgaaa aatttcaggg 0 0 23.71 26.41 -2.70 Eufind chr_1 89 5386273 5386202 Pseudo AGC actggcgaaa aattaaacag 0 0 27.38 43.35 -15.97 Eufind chr_3 65 54138655 54138585 Pseudo AGC gttgccaaag aatgtaaaca 0 0 29.96 30.89 -0.93 Eufind chr_7 21 58787394 58787465 Pseudo AGC cattgcgaaa aatttaaaca 0 0 30.44 45.24 -14.80 Eufind chr_7 41 8415784 8415714 Pseudo AGC gatgccaaag aatttaaaca 0 0 31.26 32.87 -1.61 Eufind chr_5 34 2644611 2644538 Pseudo ATG gagatggggt cagccttcca 0 0 24.02 26.04 -2.02 Eufind chr_8 26 54325331 54325257 Pseudo CAC aataaaaggt aaaaaaatta 0 0 26.47 2.63 23.84 Eufind chr_8 28 54319716 54319642 Pseudo CAT aacaaacgtt taattttttt 0 0 26.60 3.20 23.40 Eufind chr_8 30 54315248 54315174 Pseudo CAT aacaaatgtt taatttttta 0 0 28.42 3.90 24.52 Eufind chr_3 40 72167806 72167875 Pseudo CGA cacaacttat tatttgttga 0 0 21.34 31.67 -10.33 Eufind chr_2 7 3743622 3743690 Pseudo CGA tgtaatcaca tatttgttga 0 0 22.43 27.53 -5.10 Eufind chr_1 70 27699443 27699374 Pseudo CGA cacaactgat tatttgttga 0 0 23.89 32.69 -8.80 Eufind chr_7 18 53186205 53186274 Pseudo CGA cacaactgat tatttgttga 0 0 26.13 35.52 -9.39 Eufind chr_5 27 55684671 55684596 Pseudo CGG cgaagaaaaa ctcttttcaa 0 0 26.20 1.83 24.37 tRNAscan chr_8 38 16495853 16495783 Pseudo CTA gggcacaact tttcattttt 0 0 24.45 35.52 -11.07 Eufind chr_5 11 28583797 28583866 Pseudo CTC ccacgaacca acttttttgc 0 0 20.82 30.51 -9.69 Eufind chr_2 20 24586000 24586069 Pseudo CTC ccacgaacca acttttttgc 0 0 23.59 30.79 -7.20 Eufind chr_2 60 62815813 62815741 Pseudo CTC tctagtgcaa ttttttttcc 0 0 26.59 33.64 -7.05 Eufind chr_7 37 58714404 58714333 Pseudo CTT taattagtat attttcgttt 0 0 20.15 39.73 -19.58 Eufind chr_10 6 4092921 4092993 Pseudo CTT aatcacaacc tagtgggtgc 0 0 22.13 32.34 -10.21 Eufind chr_6 11 52666189 52666261 Pseudo CTT acaacgtaat tatttgttga 0 0 29.34 42.59 -13.25 Eufind chr_8 11 27299424 27299496 Pseudo CTT tcatgcagcg ccaatgttgg 0 0 43.80 40.13 3.67 Eufind chr_1 49 67079431 67079360 Pseudo GAA tttataacga ttccagtttt 0 0 40.55 38.19 2.36 Eufind chr_3 67 52125929 52125857 Pseudo GAC gcgggccaaa aatttcaggt 0 0 23.98 43.83 -19.85 Eufind chr_9 50 5785092 5785018 Pseudo GGC tcttactttc tttcaggctg 0 0 20.50 31.73 -11.23 Eufind chr_1 78 13909706 13909635 Pseudo GGC ttgccaaagg aattttcagg 0 0 23.31 32.53 -9.22 Eufind chr_4 60 41010011 41009939 Pseudo GGC gaaggccaaa aatttcaggc 0 0 24.08 42.46 -18.38 Eufind chr_1 94 2918917 2918845 Pseudo GGC aacagccaaa aatttcaagc 0 0 25.82 44.20 -18.38 Eufind chr_3 24 60299854 60299926 Pseudo GGC tcgtgccaaa aatttcaggc 0 0 25.82 44.20 -18.38 Eufind chr_4 61 36763670 36763598 Pseudo GGC gaccgccaaa aatttcaggc 0 0 25.82 44.20 -18.38 Eufind chr_8 13 41245681 41245753 Pseudo GGC ttttgccaaa aattttaagc 0 0 25.82 44.20 -18.38 Eufind chr_9 1 387748 387820 Pseudo GGC attcgccaaa aatttcatgc 0 0 25.82 44.20 -18.38 Eufind chr_3 66 53551996 53551924 Pseudo GGC aatcgccaaa aatttcaggc 0 0 26.03 37.20 -11.17 Eufind chr_4 31 65035143 65035215 Pseudo GGC agcagccaaa aatttcaggc 0 0 26.33 43.00 -16.67 Eufind chr_6 44 32172884 32172814 Pseudo GGC tagccaaagg aatttcaggc 0 0 26.53 32.25 -5.72 Eufind chr_3 74 12540048 12539976 Pseudo GGG tgagaagcaa aggtattttt 0 0 21.11 23.86 -2.75 Eufind chr_7 13 51225848 51225920 Pseudo GGG tgagaagcaa aggtattttt 0 0 22.86 25.61 -2.75 Eufind chr_3 44 73685466 73685396 Pseudo TCT atattcctgg tgtaaaaatt 0 0 49.70 46.14 3.56 Eufind chr_1 26 51006224 51006311 Pseudo TGA attgggttgt tctctctcct 51006262 51006272 23.73 5.19 18.54 Both chr_2 12 7250558 7250629 Pseudo TGT atctagaagg tcttgcagaa 0 0 24.21 51.60 -27.39 Eufind chr_8 10 26156284 26156355 Pseudo TGT acaatgaagg tcttgcagaa 0 0 25.25 47.21 -21.96 Eufind chr_5 3 480322 480396 Pseudo TGT ataatcacaa tgtatttgcg 0 0 33.77 30.70 3.07 Eufind chr_5 31 44067684 44067614 Pseudo TTA acatttgtat aatttttgtc 0 0 21.70 27.56 -5.86 Eufind scaffold_10 1 4888668 4888740 Pseudo TTT ttgtcacatt cttctttttg 0 0 20.15 25.60 -5.45 Eufind chr_3 12 14964138 14964208 Pseudo TTT aaatattgat tttctttaat 0 0 22.03 25.01 -2.98 Eufind   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr_4 59 44726746 44726674 SeC TCA taacacaaaa gctgtgtctc 0 0 20.29 0.00 0.00 Eufind   scaffold_187 1 21255 21174 Ser AGA atacggattg gtttgttttt 0 0 54.45 35.45 19.00 Eufind chr_6 39 47006433 47006352 Ser AGA aacagacgtg tttatttttt 0 0 76.30 42.19 34.11 Both chr_1 1 1504758 1504839 Ser AGA gcatcaaaca tgttttaatt 0 0 84.20 51.76 32.44 Both chr_10 14 54917723 54917804 Ser AGA caacgtccaa cttttttgtt 0 0 84.20 51.76 32.44 Both chr_3 3 644977 645058 Ser AGA acatcaaaaa gtttgttttt 0 0 84.20 51.76 32.44 Both chr_3 50 69430610 69430529 Ser AGA cggcatcaaa ctttttgcta 0 0 84.20 51.76 32.44 Both chr_3 75 9761512 9761431 Ser AGA acgtgaaatg ttttttttcc 0 0 84.20 51.76 32.44 Both chr_4 20 53126792 53126873 Ser AGA taatatcaaa gtttttttag 0 0 84.20 51.76 32.44 Both chr_4 23 55204917 55204998 Ser AGA ttgcatcgaa ttttttttca 0 0 84.20 51.76 32.44 Both chr_4 54 52580738 52580657 Ser AGA cagcacgcaa gttttgatag 0 0 84.20 51.76 32.44 Both chr_4 74 5406386 5406305 Ser AGA aagcatagca acttttgttc 0 0 84.20 51.76 32.44 Both chr_1 96 1565377 1565296 Ser CGA cactcaaata atttcttttt 0 0 81.28 49.43 31.85 Both chr_2 69 11445696 11445615 Ser CGA ccaacgaatc ttttttttaa 0 0 81.28 49.43 31.85 Both chr_3 62 59286545 59286464 Ser CGA agcatcagta attttgtcat 0 0 81.28 49.43 31.85 Both chr_9 21 57189627 57189708 Ser CGA catcacaagc gattaataca 0 0 81.28 49.43 31.85 Both chr_9 42 50384586 50384505 Ser CGA actcagtgtg caacaatttt 0 0 81.28 49.43 31.85 Both chr_4 63 15011078 15010997 Ser CGA atcattaagc taatgtgttt 0 0 82.30 49.95 32.35 Both chr_1 91 3972035 3971947 Ser GCT tttggaacgg ccccctcgga 0 0 47.46 20.86 26.60 Both chr_2 62 61298339 61298269 Ser GCT ataaaaagta agcttaattt 0 0 50.27 35.12 15.15 Eufind scaffold_59 11 405533 405620 Ser GCT tttggaacgg ccccctcgga 0 0 59.95 27.59 32.36 Both chr_4 30 64528487 64528568 Ser GCT atcacaaaac tcttcttttt 0 0 73.82 39.87 33.95 Both chr_1 28 55745041 55745122 Ser GCT ttcgccaagc cacctttttg 0 0 77.62 43.68 33.94 Both chr_2 17 14537462 14537543 Ser GCT actacccaac tatatttttt 0 0 77.62 43.68 33.94 Both chr_2 39 73200765 73200846 Ser GCT tatcaacaac aatacttttt 0 0 77.62 43.68 33.94 Both chr_4 6 1425647 1425728 Ser GCT ttccaacaac ttcttttttt 0 0 77.62 43.68 33.94 Both chr_4 8 2158987 2159068 Ser GCT ttgcaacaac tttccttttt 0 0 77.62 43.68 33.94 Both chr_5 21 58052563 58052644 Ser GCT atcatcaaac ttgtttttat 0 0 77.62 43.68 33.94 Both chr_7 39 57221296 57221215 Ser GCT tcacaacagc ttaatttttt 0 0 77.62 43.68 33.94 Both chr_1 25 50282743 50282824 Ser GCT taccagaagc agttttttgt 0 0 79.53 46.09 33.44 Both chr_10 29 6422516 6422435 Ser GCT ctgcacagtc cttgcttttt 0 0 79.53 46.09 33.44 Both chr_2 38 70969233 70969319 Ser GGA agattatgta tttctcttaa 0 0 40.50 27.74 12.76 Eufind scaffold_59 17 509748 509662 Ser GGA agattatgta tttctcttaa 0 0 55.11 27.45 27.66 Both scaffold_2154 1 2612 2698 Ser GGA agattatgta tttctgttaa 0 0 56.80 30.44 26.36 Both chr_3 68 38404046 38403960 Ser TGA gcgagcgcag cgagggcata 0 0 53.41 23.45 29.96 Both scaffold_3279 1 1384 1297 Ser TGA attgggctgt tttgtatatt 0 0 54.93 31.13 23.80 Both scaffold_59 10 401867 401954 Ser TGA attgggctgt tttgtatatt 0 0 54.93 31.13 23.80 Both scaffold_59 3 18887 18974 Ser TGA attgggctgt tttgtatatt 0 0 54.93 31.13 23.80 Both scaffold_59 8 302463 302550 Ser TGA attgggctgt tttgtatatt 0 0 54.93 31.13 23.80 Both scaffold_59 9 303691 303778 Ser TGA attgggctgt tttgtatatt 0 0 54.93 31.13 23.80 Both chr_8 3 945436 945517 Ser TGA tttcagaagc ttttttttgt 0 0 75.47 48.70 26.77 Eufind chr_2 46 76619656 76619737 Ser TGA gaacaaaaac caatactttt 0 0 78.02 45.58 32.44 Both chr_5 44 990203 990122 Ser TGA acacagcttc caattttttt 0 0 78.02 45.58 32.44 Both chr_1 33 59668284 59668365 Ser TGA tgcaccaaac ttttaggttt 0 0 80.82 48.39 32.43 Both chr_3 79 5070521 5070440 Ser TGA ttaaccaagc tcttattttt 0 0 80.82 48.39 32.43 Both chr_9 7 6207627 6207708 Ser TGA atcacaaatt gttttttttt 0 0 80.82 48.39 32.43 Both   chr_1 41 72244473 72244546 Sup CTA tgtttcgaaa attccatata 0 0 45.07 31.20 13.87 Eufind   chr_1 69 47266209 47266136 Thr AGT aaatcaaaaa ttttttttct 0 0 61.08 39.06 22.02 Both chr_1 11 5596695 5596768 Thr AGT ttaaacaaaa atttcaattt 0 0 68.50 41.53 26.97 Both chr_4 47 57009432 57009359 Thr AGT aatcataata atatttttgt 0 0 73.28 48.13 25.15 Both chr_1 15 11254849 11254922 Thr AGT aatcactaaa tattttttgt 0 0 74.28 46.95 27.33 Both chr_8 39 4867792 4867719 Thr AGT aatcataaaa tttttgtttt 0 0 74.28 46.95 27.33 Both chr_4 32 66505351 66505424 Thr AGT aaacacaaca atatttatta 0 0 74.68 47.71 26.97 Both chr_9 52 5102104 5102031 Thr AGT tgtatctaaa ttttattttt 0 0 75.68 50.42 25.26 Both chr_2 3 2587175 2587248 Thr AGT ctaaccaaca tcttattttt 0 0 76.42 49.45 26.97 Both chr_3 77 7410220 7410147 Thr AGT aatcaaagtt ttatgtttta 0 0 76.42 49.45 26.97 Both chr_8 36 47608659 47608586 Thr AGT acaccaacaa gtatattttt 0 0 76.90 50.29 26.61 Both chr_6 28 52440572 52440499 Thr AGT atatgcaatt attttttata 0 0 77.21 49.88 27.33 Both chr_8 40 4861733 4861660 Thr AGT aataacaaga gtctttttgt 0 0 77.21 49.88 27.33 Both chr_2 33 66928369 66928440 Thr CGT agcagaaagt cacctcttgt 0 0 82.82 60.66 22.16 Both chr_4 42 62191401 62191330 Thr CGT aatacgtgct gagcataatt 0 0 82.82 60.66 22.16 Both chr_6 13 54389233 54389304 Thr CGT agcatcacct gttgttattg 0 0 82.82 60.66 22.16 Both chr_1 37 66996732 66996803 Thr CGT agcaacattg gtacctaacc 0 0 82.97 61.28 21.69 Both chr_10 20 60568941 60569012 Thr CGT agcaagatga ccgtcagtgt 0 0 84.43 63.80 20.63 Both chr_4 34 67912757 67912686 Thr CGT ataagcagcc cttctatttt 0 0 84.43 63.80 20.63 Both scaffold_59 27 14671 14600 Thr GGT atccgataaa tttctactaa 0 0 34.01 19.25 14.76 Both scaffold_59 26 14738 14667 Thr GGT tgaataaaaa tttcacttag 0 0 60.49 29.15 31.34 Both chr_2 18 16483043 16483112 Thr TGT ctaggatttt gtttgttgct 0 0 44.27 30.09 14.18 Eufind chr_2 73 6721258 6721186 Thr TGT tgttaggtaa ttttttctat 0 0 49.59 38.52 11.07 Eufind scaffold_59 15 508384 508456 Thr TGT tgttatgtaa tttttttcta 0 0 67.46 44.88 22.58 Both chr_1 72 19732227 19732156 Thr TGT agcatcaaag cattttttgt 0 0 78.52 50.14 28.38 Both chr_4 48 56908615 56908544 Thr TGT accatgagat aacttttttt 0 0 78.52 50.14 28.38 Both chr_6 29 52345596 52345525 Thr TGT agcacaagtt gttctttttt 0 0 78.52 50.14 28.38 Both chr_1 42 72870313 72870384 Thr TGT cgttcaaaaa ttttaatttt 0 0 82.64 57.48 25.16 Both chr_2 59 64884330 64884259 Thr TGT tataataata tgacttttcc 0 0 82.64 57.48 25.16 Both chr_7 35 60628958 60628887 Thr TGT ttaaacaaaa tttttgttcc 0 0 82.64 57.48 25.16 Both   chr_6 27 53505561 53505488 Trp CCA tgttttgaaa tttttgcatg 0 0 66.73 38.00 28.73 Both scaffold_59 5 111930 112003 Trp CCA tgttttgaaa attccatata 0 0 68.94 40.21 28.73 Both chr_1 23 29451577 29451648 Trp CCA aagcaccacc aacccccggt 0 0 77.63 55.47 22.16 Both chr_1 30 57327720 57327791 Trp CCA agatcactcc aaaccccgaa 0 0 77.63 55.47 22.16 Both chr_1 60 57325546 57325475 Trp CCA gaataaaacc ataccccgat 0 0 77.63 55.47 22.16 Both chr_2 41 74105903 74105974 Trp CCA atcaccgtcc aacccccgaa 0 0 77.63 55.47 22.16 Both chr_4 45 57695700 57695629 Trp CCA cttacaccta aatccccgat 0 0 77.63 55.47 22.16 Both chr_4 51 53671231 53671160 Trp CCA tgatacagcc ataccccgat 0 0 77.63 55.47 22.16 Both chr_4 53 53483616 53483545 Trp CCA cagcacaacc ataccccgat 0 0 77.63 55.47 22.16 Both chr_6 21 58519756 58519685 Trp CCA catcaccata ataccccgat 0 0 77.63 55.47 22.16 Both chr_6 36 48609837 48609766 Trp CCA cgtcaccatc aaaccccggt 0 0 77.63 55.47 22.16 Both chr_6 38 48331366 48331295 Trp CCA agcacaaacc aaaccccgaa 0 0 77.63 55.47 22.16 Both chr_7 7 6438872 6438943 Trp CCA aacaaaagcc aactcccgat 0 0 77.63 55.47 22.16 Both   chr_8 31 54314548 54314474 Tyr ATA atcaaatgtt aattttttat 54314514 54314509 33.02 15.41 17.61 Eufind scaffold_59 29 14008 13925 Tyr GTA aattcttcct aaaatttagg 0 0 51.74 32.31 19.43 Both scaffold_1122 2 2102 2020 Tyr GTA cccagggaag cttgttgtag 0 0 53.60 33.17 20.43 Both chr_1 83 10605199 10605112 Tyr GTA atttgacaag catttttttt 10605162 10605148 76.41 48.68 27.73 Both chr_8 42 1644722 1644634 Tyr GTA ttttcagaaa tatttttttt 1644685 1644670 77.32 49.59 27.73 Both chr_7 45 233998 233913 Tyr GTA tgagcacata agttatttga 233961 233949 77.80 50.07 27.73 Both chr_7 11 36745448 36745533 Tyr GTA attttcaaaa aatattcatt 36745485 36745497 76.02 48.29 27.73 Both chr_7 15 51795899 51795986 Tyr GTA ctaacacaaa tttttttttg 51795936 51795950 76.78 49.05 27.73 Both chr_2 22 53034390 53034478 Tyr GTA gcatcatccc gttttttttt 53034427 53034442 76.57 50.30 26.27 Both chr_2 65 56732093 56732007 Tyr GTA ataacacaaa ttttttttgt 56732056 56732043 71.18 49.33 21.85 Both chr_4 46 57247856 57247771 Tyr GTA gaaacaaaaa tgtttttttt 57247819 57247807 77.93 50.20 27.73 Both chr_6 23 57480673 57480588 Tyr GTA tagtccaaaa tattttgttt 57480636 57480624 77.66 49.93 27.73 Both chr_2 61 62614739 62614653 Tyr GTA actgcataaa gtttttgcct 62614702 62614689 76.14 48.41 27.73 Both chr_3 58 63366264 63366179 Tyr GTA aagagcacat atttttttca 63366227 63366215 76.52 48.79 27.73 Both chr_1 47 67686352 67686267 Tyr GTA taagccaaaa ttttttttat 67686315 67686303 78.08 50.34 27.74 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr_5 37 1974671 1974598 Undet ??? tgttaaaatt atcattactt 0 0 25.40 12.80 12.60 Eufind chr_5 35 1975202 1975129 Undet ??? ggtcaacatt attattattt 0 0 28.50 11.25 17.25 Eufind chr_5 40 1974211 1974138 Undet ??? gtacaaaact atcattactt 0 0 32.62 16.96 15.66 Eufind chr_2 4 2859907 2859980 Undet ??? aatgcaaatt attaactttt 0 0 34.88 18.86 16.02 Eufind chr_5 41 1974056 1973983 Undet ??? gcacaaaatt atcattattt 0 0 37.25 12.64 24.61 Eufind chr_5 39 1974363 1974290 Undet ??? gcacaaaatt atcattattt 0 0 37.65 16.98 20.67 Eufind chr_8 4 1620628 1620701 Undet ??? aataaaaatt tttaattatt 0 0 37.67 14.52 23.15 Eufind chr_5 38 1974519 1974446 Undet ??? gcacaaaatt atcattactt 0 0 38.79 15.03 23.76 Eufind   chr_1 5 2626057 2626130 Val AAC atatcatcat cttttttttc 0 0 76.67 54.09 22.58 Both chr_6 22 57526747 57526674 Val AAC aagcatcaat aattttcatt 0 0 76.93 54.36 22.57 Both chr_8 32 52554823 52554750 Val AAC tacatcgaac aaatttttgc 0 0 76.93 54.36 22.57 Both chr_9 23 58922522 58922595 Val AAC atcacgcaat tactaatatt 0 0 76.93 54.36 22.57 Both chr_2 70 10626883 10626810 Val AAC actgacacaa aattctttaa 0 0 76.95 55.01 21.94 Both chr_3 51 69100429 69100356 Val AAC tgatcacttc tttaattttt 0 0 76.95 55.01 21.94 Both chr_1 2 1573484 1573557 Val AAC agaaccacaa attctttttt 0 0 77.22 55.27 21.95 Both chr_1 3 1593785 1593858 Val AAC gaaacgcgaa atttttgccg 0 0 77.22 55.27 21.95 Both chr_1 8 5226334 5226407 Val AAC tgacaccaaa cttttttgtg 0 0 77.22 55.27 21.95 Both chr_4 2 1011498 1011571 Val AAC aacacgtaac aaatatttta 0 0 77.22 55.27 21.95 Both chr_5 8 6142556 6142629 Val AAC aaacagcaag ctaattttgt 0 0 79.67 52.20 27.47 Both chr_6 45 20775 20702 Val AAC atgacagcaa tatgtttttt 0 0 79.67 52.20 27.47 Both chr_7 32 61052655 61052582 Val AAC aagcatcacg ataatttttg 0 0 79.67 52.20 27.47 Both chr_7 33 61051296 61051223 Val AAC gaaccgatat ttttttgtgt 0 0 79.67 52.20 27.47 Both chr_2 76 2877631 2877558 Val AAC catcacaaac tatttgtttt 0 0 83.08 55.35 27.73 Both chr_7 42 7789921 7789848 Val AAC tgccacaaaa ttttatttgt 0 0 84.73 57.01 27.72 Both chr_3 54 67452879 67452806 Val CAC ccagcacaat tttttttttc 0 0 80.53 52.65 27.88 Both chr_6 34 50691207 50691134 Val CAC tagcacaatt ttatgctttt 0 0 80.53 52.65 27.88 Both chr_6 43 38065691 38065618 Val CAC tagcaaaaag attcttttta 0 0 80.53 52.65 27.88 Both chr_8 43 1530427 1530354 Val CAC cgatcacatt tttaatgtgt 0 0 80.53 52.65 27.88 Both chr_1 85 7928028 7927955 Val CAC acaacaggat aattatttta 0 0 82.62 54.74 27.88 Both chr_2 67 54519262 54519189 Val CAC aaaacaactt tttttattcg 0 0 82.62 54.74 27.88 Both chr_5 15 56692286 56692359 Val CAC taggcaagtt ttaccatttt 0 0 82.62 54.74 27.88 Both chr_5 5 2054825 2054898 Val CAC tcataaaaat atttattttt 0 0 82.62 54.74 27.88 Both chr_6 18 61617214 61617141 Val CAC ttttcacgtt ttttttttct 0 0 82.62 54.74 27.88 Both chr_7 22 59095347 59095420 Val CAC aaatcaactt tgatttattt 0 0 82.62 54.74 27.88 Both chr_4 73 6952664 6952593 Val GAC aatcaccaat gcttttttgt 0 0 32.99 26.48 6.51 Both scaffold_59 14 426504 426575 Val GAC gggacgggga aacctaatgt 0 0 51.67 16.10 35.57 Both chr_6 26 54871968 54871896 Val TAC gtacatcaca aattttgttt 0 0 76.67 46.07 30.60 Both chr_9 25 58911013 58910941 Val TAC tgtcatctac tctttttttt 0 0 76.67 46.07 30.60 Both chr_9 29 55777004 55776932 Val TAC aaccatcaaa tttctaccca 0 0 76.67 46.07 30.60 Both chr_3 25 61539151 61539223 Val TAC atcaaaagct tgtttttatt 0 0 77.93 48.10 29.83 Both

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.