tRNAscan-SE v.1.23 (April 2002) scan results (on host lowedev.cse.ucsc.edu)
Started: Sat Jul 19 19:41:18 PDT 2008

------------------------------------------------------------
Search Mode:                 Eukaryotic
Searching with:              tRNAscan + EufindtRNA -> Cove
Covariance model:            TRNA2-euk.cm
tRNAscan parameters:         Strict
EufindtRNA parameters:       Relaxed (Int Cutoff= -32.1)

Reporting HMM/2' structure score breakdown
------------------------------------------------------------

First-pass (tRNAscan/EufindtRNA) Stats:
---------------
Sequences read:         17
Seqs w/at least 1 hit:  17
Bases read:             12156679 (x2 for both strands)
Bases in tRNAs:         30771
tRNAs predicted:        358
Av. tRNA length:        85
Script CPU time:        1.61 s
Scan CPU time:          8.00 s
Scan speed:             3039.2 Kbp/sec

First pass search(es) ended: Sat Jul 19 19:41:28 PDT 2008

Cove Stats:
-----------
Candidate tRNAs read:     358
Cove-confirmed tRNAs:     295
Bases scanned by covels:  35783
% seq scanned by covels:  0.1 %
Script CPU time:          1.11 s
Cove CPU time:            41.81 s
Scan speed:               855.8 bp/sec

Cove analysis of tRNAs ended: Sat Jul 19 19:42:38 PDT 2008

Summary
--------
Overall scan speed: 462847.1 bp/sec

tRNAs decoding Standard 20 AA:              286
Selenocysteine tRNAs (TCA):                 1
Possible suppressor tRNAs (CTA,TTA):        0
tRNAs with undetermined/unknown isotypes:   2
Predicted pseudogenes:                      6
                                            -------
Total tRNAs:                                295

tRNAs with introns:     	59

| Pro-TGG: 10 | Ser-CGA: 1 | Ser-GCT: 2 | Leu-TAG: 3 | Leu-CAA: 10 | Phe-GAA: 10 | Lys-TTT: 7 | Ile-TAT: 2 | Tyr-GTA: 8 | Trp-CCA: 6 |

Isotype / Anticodon Counts:

Ala   : 17	  AGC: 11      GGC:         CGC:         TGC: 6     
Gly   : 21	  ACC:         GCC: 16      CCC: 2       TCC: 3     
Pro   : 12	  AGG: 2       GGG:         CGG:         TGG: 10    
Thr   : 17	  AGT: 11      GGT:         CGT: 1       TGT: 5     
Val   : 19	  AAC: 14      GAC:         CAC: 2       TAC: 3     
Ser   : 18	  AGA: 11      GGA:         CGA: 1       TGA: 4       ACT:         GCT: 2     
Arg   : 21	  ACG: 7       GCG:         CCG: 1       TCG:         CCT: 1       TCT: 12    
Leu   : 21	  AAG:         GAG: 1       CAG:         TAG: 3       CAA: 10      TAA: 7     
Phe   : 11	  AAA:         GAA: 11                              
Asn   : 11	  ATT:         GTT: 11                              
Lys   : 22	                            CTT: 14      TTT: 8     
Asp   : 16	  ATC:         GTC: 16                              
Glu   : 17	                            CTC: 2       TTC: 15    
His   : 8	  ATG:         GTG: 8                               
Gln   : 10	                            CTG: 1       TTG: 9     
Ile   : 16	  AAT: 13      GAT: 1                    TAT: 2     
Met   : 11	                            CAT: 11                 
Tyr   : 8	  ATA:         GTA: 8                               
Supres: 0	                            CTA:         TTA:       
Cys   : 4	  ACA:         GCA: 4                               
Trp   : 6	                            CCA: 6                  
SelCys: 1	                                         TCA: 1