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tRNAscan-SE Analysis of Saccharomyces cerevisiae

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Modomics tRNA Modifications >> Genome DB >> Genome Seq

tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr1 1 139154 139256 View Pro TGG caattagtac gaataatttt 139190 139220 60.49 38.69 21.80 Both chr1 2 166268 166340 View Ala TGC gtaatgagtt aatttttttg 0 0 76.57 56.87 19.70 Both chr1 3 181135 181248 View Leu CAA acaaataagt ttattttttc 181173 181204 53.68 27.36 26.32 Both chr1 4 182597 182516 View Ser AGA atacaatttt ttattttttt 0 0 85.00 55.97 29.03 Both   chr2 1 9583 9666 View Leu TAA gaaaattcgt gtattttttt 0 0 69.31 38.42 30.89 Both chr2 2 36395 36485 View Phe GAA ttagttgtaa ttcctttttg 36432 36449 68.89 41.62 27.27 Both chr2 3 197497 197570 View Ile AAT cagtaatcaa tttttttgca 0 0 71.40 43.78 27.62 Both chr2 4 227078 227159 View Ser AGA tgtaaaacga ttattttttg 0 0 85.00 55.97 29.03 Both chr2 5 266378 266450 View Thr AGT atcaaaaact tttttttgaa 0 0 78.63 51.71 26.92 Both chr2 6 347601 347684 View Leu TAA tcatttatac gtaatatttt 0 0 69.31 38.42 30.89 Both chr2 7 350825 350896 View Gln TTG tcaataaaag tatttttata 0 0 65.72 43.78 21.94 Both chr2 8 405872 405943 View Arg TCT acaaatagta ctttgtttct 0 0 66.88 46.99 19.89 Both chr2 9 405954 406025 View Asp GTC ctttgtttct atttttttgg 0 0 58.36 32.46 25.90 Both chr2 10 645162 645233 View Glu TTC taagttatta ttattttttg 0 0 62.99 35.57 27.42 Both chr2 11 643073 643002 View Cys GCA gtaatagaaa tctttttttt 0 0 75.04 50.16 24.88 Both chr2 12 326864 326791 View Val TAC tcgagttccg aactctttat 0 0 74.06 49.30 24.76 Both chr2 13 197702 197632 View Gly GCC caagaaataa attctttttg 0 0 62.73 36.41 26.32 Both   chr3 1 90859 90972 View Leu CAA acaagtaatt ttattttttt 90897 90928 54.18 27.86 26.32 Both chr3 2 127714 127787 View Asn GTT aagataaaat ttaatttttc 0 0 77.73 51.70 26.03 Both chr3 3 149918 149989 View Met CAT tgtaatgttg ttaaattttt 0 0 74.96 47.76 27.20 Both chr3 4 227938 228038 View Ser CGA aaatcgaaat tttaattttt 227975 227993 75.88 53.06 22.82 Both chr3 5 295481 295553 View Thr AGT atacaattaa ttttttatca 0 0 78.63 51.71 26.92 Both chr3 6 168368 168297 View Gln TTG aagaagtcct ttttttgaat 0 0 68.39 46.17 22.22 Both chr3 7 151354 151282 View Lys CTT taattaaaga ttcttttttc 0 0 77.79 52.97 24.82 Both chr3 8 142769 142699 View Gly GCC aagattacta tcttttttac 0 0 62.73 36.41 26.32 Both chr3 9 123646 123575 View Pro AGG tttcaaagga acattgtttt 0 0 66.99 49.54 17.45 Both chr3 10 82533 82462 View Glu TTC taatttgtta tttttttttt 0 0 62.99 35.57 27.42 Both   chr4 1 83549 83619 View Gly GCC agttcactta agtttaattt 0 0 62.73 36.41 26.32 Both chr4 2 359577 359672 View Lys TTT gaagaactca ttctttcttt 359614 359636 69.00 45.27 23.73 Both chr4 3 410376 410448 View Ala AGC tacaaatatt aattattttt 0 0 74.48 50.69 23.79 Both chr4 4 437769 437850 View Ser AGA tcattagtaa tcatttttat 0 0 85.00 55.97 29.03 Both chr4 5 519740 519823 View Leu TAA gtgattttac ataacttatt 0 0 69.31 38.42 30.89 Both chr4 6 520969 521040 View Gln TTG tccattttag tttctatttt 0 0 68.39 46.17 22.22 Both chr4 7 568880 568951 View Arg TCT acaaatagta ctttgtttct 0 0 66.88 46.99 19.89 Both chr4 8 568962 569033 View Asp GTC ctttgtttct aatttttttt 0 0 58.36 32.46 25.90 Both chr4 9 884358 884490 View Ile TAT tttcgaaaat ctttctcttt 884395 884454 61.82 39.66 22.16 Both chr4 10 946308 946396 View Tyr GTA aagaaatcga tttttttatg 946347 946360 68.81 37.35 31.46 Both chr4 11 992828 992898 View Gly GCC acaattgtga cttttttagc 0 0 62.73 36.41 26.32 Both chr4 12 1175823 1175895 View Met CAT acaaaacaaa tttttgccga 0 0 70.03 52.29 17.74 Both chr4 13 1201742 1201814 View Lys CTT caaataaata aataacacat 0 0 77.79 52.97 24.82 Both chr4 14 1305622 1305704 View Ser AGA tacaaattaa ttatttttaa 0 0 84.84 55.43 29.41 Both chr4 15 1461821 1461707 View Leu CAA acaaataagt atatttttta 1461783 1461751 54.09 27.77 26.32 Both chr4 16 1352530 1352458 View Lys CTT caacgaaata atcttttttt 0 0 77.79 52.97 24.82 Both chr4 17 1257071 1257000 View Gly CCC gatcttctta ttttttgtgc 0 0 75.60 55.33 20.27 Both chr4 18 1150935 1150836 View Undet ??? aagtgtttca cactttattt 0 0 57.54 36.89 20.65 Eufind chr4 19 1095458 1095367 View Phe GAA tcttatgtta tttttatttt 1095421 1095403 71.83 45.34 26.49 Both chr4 20 1075540 1075468 View Val CAC ccgtaatatt tttgtttttt 0 0 75.97 46.81 29.16 Both chr4 21 1017274 1017203 View Glu CTC caaggtacaa tttctttttt 0 0 59.79 35.84 23.95 Both chr4 22 981051 980970 View Ser AGA tgtaaattga tttttaccaa 0 0 85.00 55.97 29.03 Both chr4 23 802799 802728 View Gln TTG atgaattgtc ctttttattt 0 0 68.39 46.17 22.22 Both chr4 24 668077 668004 View Ile AAT gatccaaatt tttttatttt 0 0 71.40 43.78 27.62 Both chr4 25 645221 645150 View Gln TTG cagttgttac tttttaactg 0 0 68.39 46.17 22.22 Both chr4 26 620038 619966 View Arg ACG agaaatcttg attttttata 0 0 71.46 49.52 21.94 Both chr4 27 488867 488794 View Val TAC atgggtttcc gaatcttttt 0 0 74.06 49.30 24.76 Both chr4 28 434333 434261 View Thr AGT caaatcagaa tatttttatg 0 0 78.63 51.71 26.92 Both   chr5 1 86604 86685 View Ser AGA aatgagttat ttatttttct 0 0 85.00 55.97 29.03 Both chr5 2 100133 100204 View Met CAT aagttggcta atttttcatt 0 0 74.96 47.76 27.20 Both chr5 3 138666 138737 View Arg TCT aataaataat ttttttttat 0 0 66.88 46.99 19.89 Both chr5 4 177098 177169 View Glu TTC cctactttga tacttttttg 0 0 62.99 35.57 27.42 Both chr5 5 207356 207427 View His GTG atataagttc tatttatttt 0 0 66.37 40.73 25.64 Both chr5 6 250285 250356 View Gln TTG cagttgtact tttttattca 0 0 68.39 46.17 22.22 Both chr5 7 354930 355001 View Glu TTC tgtattgtaa tacttttttg 0 0 62.99 35.57 27.42 Both chr5 8 438696 438769 View Val AAC caacaaatta attttttttt 0 0 68.42 45.91 22.51 Both chr5 9 469452 469525 View Val AAC agaaataatt ttttttaaat 0 0 68.42 45.91 22.51 Both chr5 10 551353 551280 View Ile AAT acagattaca atttttttga 0 0 71.40 43.78 27.62 Both chr5 11 492419 492347 View Arg ACG gaacatccta gattattttt 0 0 71.46 49.52 21.94 Both chr5 12 487397 487326 View Glu TTC atgaatttaa tattcgttat 0 0 62.99 35.57 27.42 Both chr5 13 443271 443198 View Ile AAT attaaaattt tatttttttt 0 0 71.40 43.78 27.62 Both chr5 14 435820 435748 View Lys CTT aacaataaga ttctttttaa 0 0 77.79 52.97 24.82 Both chr5 15 434608 434537 View His GTG ttgaaaagtc ttttcttttt 0 0 66.37 40.73 25.64 Both chr5 16 312091 312019 View Ala TGC cagaaattct atgaaatctt 0 0 76.57 56.87 19.70 Both chr5 17 288522 288441 View Ser TGA cataatgata ttttttttat 0 0 84.16 62.98 21.18 Both chr5 18 135497 135425 View Lys CTT caagaaaaaa ttctttttct 0 0 77.79 52.97 24.82 Both chr5 19 131153 131082 View Gln TTG ataattaaga atttttttcc 0 0 68.78 43.87 24.91 Both chr5 20 61960 61890 View Gly GCC caaatagtaa gctttatttt 0 0 62.73 36.41 26.32 Both   chr6 1 101370 101472 View Pro TGG acaataattc cttttttttg 101406 101436 60.63 38.84 21.79 Both chr6 2 162222 162292 View Gly GCC aagaaaacaa gtttcttttt 0 0 62.73 36.41 26.32 Both chr6 3 167430 167518 View Tyr GTA acaaaaacga tattttttta 167469 167482 68.18 36.72 31.46 Both chr6 4 226747 226676 View Lys CTT agattaaaat tatctctttt 0 0 70.32 45.09 25.23 Eufind chr6 5 210695 210607 View Tyr GTA acaaaaacga tatttttttc 210656 210643 68.18 36.72 31.46 Both chr6 6 204984 204912 View Ala AGC acaaacgttc tttaaatttt 0 0 74.48 50.69 23.79 Both chr6 7 191601 191501 View Ser GCT aagagattct catttctttt 191564 191546 68.67 44.11 24.56 Both chr6 8 181036 180966 View Gly GCC cttccaataa gtcctttttt 0 0 62.73 36.41 26.32 Both chr6 9 158001 157910 View Phe GAA ataaatagaa ttcatttttt 157964 157946 69.79 42.53 27.26 Both chr6 10 137554 137481 View Asn GTT aaaagtgact tttttttatt 0 0 77.73 51.70 26.03 Both   chr7 1 115492 115587 View Lys TTT gaagaactca ttcttcttta 115529 115551 69.00 45.27 23.73 Both chr7 2 122273 122345 View Lys CTT caacgaatta attctttttt 0 0 77.79 52.97 24.82 Both chr7 3 205527 205640 View Leu CAA acaaataagt ttatttttta 205565 205596 53.40 27.09 26.31 Both chr7 4 319784 319855 View His GTG aaagaaatta ttttttccga 0 0 66.37 40.73 25.64 Both chr7 5 328586 328657 View Glu TTC acaattattg ttttttgtcg 0 0 62.99 35.57 27.42 Both chr7 6 405473 405544 View Arg TCT acaaacagta ctttttttga 0 0 66.88 46.99 19.89 Both chr7 7 423098 423211 View Leu CAA acagataagt ttattttttt 423136 423167 54.18 27.86 26.32 Both chr7 8 531614 531685 View Asp GTC tcgagttact atatttttta 0 0 58.36 32.46 25.90 Both chr7 9 541854 541925 View Glu TTC cagattacca tgttcttttt 0 0 62.99 35.57 27.42 Both chr7 10 661753 661824 View Thr TGT gtaaaaattt taattttata 0 0 77.84 58.39 19.45 Both chr7 11 700679 700760 View Leu GAG cagatgaatt atattttttt 0 0 64.51 38.18 26.33 Both chr7 12 731142 731215 View Asn GTT tagtcaaaaa ttttttgctt 0 0 77.73 51.70 26.03 Both chr7 13 736345 736416 View Arg TCT aatttcaata ttgttttttt 0 0 66.88 46.99 19.89 Both chr7 14 739127 739200 View Ile AAT gaaaaaaata tttacttttt 0 0 71.40 43.78 27.62 Both chr7 15 774354 774426 View Ala AGC tcaattaatt aattttttta 0 0 74.48 50.69 23.79 Both chr7 16 779621 779692 View Gly TCC agttaacccc agattacttt 0 0 66.72 41.42 25.30 Both chr7 17 794422 794494 View Ala TGC catagattgc tatttttaac 0 0 76.57 56.87 19.70 Both chr7 18 823487 823560 View Val AAC caataagagt ttttttgaag 0 0 68.42 45.91 22.51 Both chr7 19 845654 845724 View Gly GCC taaataacaa atgttttttc 0 0 62.73 36.41 26.32 Both chr7 20 876399 876471 View Lys CTT taatagaata ttcttttttt 0 0 77.79 52.97 24.82 Both chr7 21 1004222 1004293 View Thr TGT tcaagggttt gtttcctttt 0 0 77.84 58.39 19.45 Both chr7 22 931026 930956 View Gly GCC taatcagtaa tttttttctt 0 0 62.73 36.41 26.32 Both chr7 23 878820 878715 View Trp CCA atttcaagat ttttattatt 878784 878751 67.27 46.42 20.85 Both chr7 24 857496 857383 View Leu CAA acaaataagt ataatttttt 857458 857427 54.18 27.86 26.32 Both chr7 25 828799 828728 View Arg TCT acaaacagta ctttttttgc 0 0 66.88 46.99 19.89 Both chr7 26 707183 707112 View Cys GCA agaaaatcaa ttttattaac 0 0 75.04 50.16 24.88 Both chr7 27 701052 700957 View Lys TTT gaagaactca ttcttctttt 701015 700993 69.64 45.90 23.74 Both chr7 28 561747 561666 View Ser AGA tgtatacatt ttatttttga 0 0 85.00 55.97 29.03 Both chr7 29 544652 544581 View Asp GTC agatatttct atttttttct 0 0 58.36 32.46 25.90 Both chr7 30 440812 440721 View Phe GAA taaaatatat taataagcca 440775 440757 69.79 42.53 27.26 Both chr7 31 412370 412297 View Val AAC tcaaaaaact agttttattt 0 0 68.42 45.91 22.51 Both chr7 32 401601 401530 View Glu TTC ttaatttgtt tatttttttg 0 0 62.99 35.57 27.42 Both chr7 33 287461 287356 View Trp CCA atttcaagat ttttttatac 287425 287392 67.27 46.42 20.85 Both chr7 34 185792 185720 View Lys CTT caacgaaata atctttttta 0 0 77.79 52.97 24.82 Both chr7 35 110700 110629 View His GTG ataattacct atttttttac 0 0 66.37 40.73 25.64 Both chr7 36 73901 73828 View Val AAC tcaattaagt ttattttttt 0 0 68.42 45.91 22.51 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr8 1 62753 62824 View His GTG aaaatcatat tttatttttt 0 0 66.37 40.73 25.64 Both chr8 2 134314 134385 View Gln TTG agtaagttcc ttttttgcta 0 0 68.39 46.17 22.22 Both chr8 3 466990 467061 View Thr TGT tgtattttta ttataccggt 0 0 79.33 61.25 18.08 Both chr8 4 475778 475706 View Val CAC ttaaaagtct ttttaacatc 0 0 75.97 46.81 29.16 Both chr8 5 388998 388896 View Pro TGG acagatacat attataattt 388962 388932 59.08 37.28 21.80 Both chr8 6 358572 358481 View Phe GAA caaatagtaa tattttttta 358535 358517 69.79 42.53 27.26 Both chr8 7 237941 237850 View Phe GAA caaatagtaa tttttgtaaa 237904 237886 69.79 42.53 27.26 Both chr8 8 146307 146235 View Ala AGC acaaatatca atcttttttg 0 0 74.48 50.69 23.79 Both chr8 9 133100 133019 View Ser AGA tataataagt ataatttttt 0 0 85.00 55.97 29.03 Both chr8 10 116174 116102 View Thr AGT cactattaga ttttttgcat 0 0 78.63 51.71 26.92 Both chr8 11 85367 85294 View Val AAC ataagaattt attttttttg 0 0 68.42 45.91 22.51 Both   chr9 1 175028 175100 View Thr AGT acaagtacga atttttttct 0 0 78.63 51.71 26.92 Both chr9 2 197589 197660 View Glu CTC gctaatcaaa ttatttttta 0 0 59.79 35.84 23.95 Both chr9 3 210662 210735 View Ile AAT tgaaatatct tatttttttg 0 0 71.40 43.78 27.62 Both chr9 4 248847 248928 View Ser TGA cattgtttta ttattttttt 0 0 84.16 62.98 21.18 Both chr9 5 325746 325818 View Thr AGT taaaatacga attttttttc 0 0 78.63 51.71 26.92 Both chr9 6 370414 370485 View Glu TTC tagattataa tatgtttatt 0 0 62.99 35.57 27.42 Both chr9 7 336417 336346 View Asp GTC tagaaacaaa atttttttac 0 0 58.36 32.46 25.90 Both chr9 8 324372 324301 View Asp GTC catctaatat atttttttag 0 0 58.36 32.46 25.90 Both chr9 9 300298 300227 View Lys CTT caacgaaata atctttttac 0 0 70.32 45.09 25.23 Eufind chr9 10 183510 183437 View Ile AAT acaaattcct cttattttta 0 0 71.40 43.78 27.62 Both   chr10 1 204731 204802 View Asp GTC aacataaaaa attttttttg 0 0 58.36 32.46 25.90 Both chr10 2 233935 234007 View Arg ACG tatattcttg aatattcttt 0 0 70.24 51.78 18.46 Both chr10 3 354239 354327 View Tyr GTA tcatttatca tttttttaat 354278 354291 68.18 36.72 31.46 Both chr10 4 355369 355440 View Arg TCT acaaacagta ctttgtttct 0 0 66.88 46.99 19.89 Both chr10 5 355451 355522 View Asp GTC ctttgtttct attttttttg 0 0 58.36 32.46 25.90 Both chr10 6 378355 378428 View Val AAC taaattaata attttttgtt 0 0 68.42 45.91 22.51 Both chr10 7 414960 415032 View Lys CTT caacgaatta aatatttttt 0 0 77.79 52.97 24.82 Both chr10 8 422931 423003 View Met CAT tcctttgtat cattttcttt 0 0 70.03 52.29 17.74 Both chr10 9 531821 531891 View Gly GCC caattagtga gtttcttttc 0 0 62.73 36.41 26.32 Both chr10 10 538548 538619 View Arg CCT aaccaagttg ttgattattt 0 0 71.23 48.51 22.72 Both chr10 11 541501 541572 View Asp GTC agaaagaaaa atttttttgg 0 0 58.36 32.46 25.90 Both chr10 12 617912 618012 View Leu TAG aacaaacaat ttattttttg 617950 617968 61.03 34.06 26.97 Both chr10 13 543037 542949 View Tyr GTA caattaaata tttttttgtt 542998 542985 68.81 37.35 31.46 Both chr10 14 524086 524005 View Ser AGA agagattaaa ttatttttta 0 0 85.00 55.97 29.03 Both chr10 15 517877 517806 View Met CAT ataaaagtta agcttaattt 0 0 74.96 47.76 27.20 Both chr10 16 424509 424426 View Leu TAA taaataagat gtattttttg 0 0 69.31 38.42 30.89 Both chr10 17 416030 415925 View Trp CCA aacaaaagtt atttattttt 415994 415961 67.27 46.42 20.85 Both chr10 18 396791 396721 View Gly GCC tcaaaagtaa tttctttttt 0 0 62.73 36.41 26.32 Both chr10 19 391110 391038 View Met CAT aagaaatagt tatttttata 0 0 70.03 52.29 17.74 Both chr10 20 374572 374501 View Arg TCT acaaatagta ctttgtttct 0 0 66.88 46.99 19.89 Both chr10 21 374490 374419 View Asp GTC ctttgtttct atttttttgg 0 0 58.36 32.46 25.90 Both chr10 22 197383 197311 View Ala AGC aataatatta atttcttttt 0 0 74.48 50.69 23.79 Both chr10 23 116006 115935 View Glu TTC ccgtttataa tattttttat 0 0 62.99 35.57 27.42 Both chr10 24 59172 59100 View Thr AGT taaaatagaa tatatttgat 0 0 78.63 51.71 26.92 Both   chr11 1 74629 74702 View Asn GTT atagcaatta cttattttta 0 0 77.73 51.70 26.03 Both chr11 2 84213 84296 View Leu TAA aaatttgtat gtaatttttt 0 0 69.31 38.42 30.89 Both chr11 3 202643 202715 View Lys CTT acgtttaaaa ttctttttaa 0 0 77.79 52.97 24.82 Both chr11 4 219539 219611 View Ala AGC acagtaaata atctttttat 0 0 74.48 50.69 23.79 Both chr11 5 302562 302667 View Trp CCA attccaagat ttttcttttt 302598 302631 67.27 46.42 20.85 Both chr11 6 379323 379396 View Val AAC cagattaata attaattttt 0 0 68.42 45.91 22.51 Both chr11 7 458200 458313 View Leu CAA acaaataagt tattttatat 458238 458269 54.18 27.86 26.32 Both chr11 8 490611 490683 View Arg ACG ataattcttg aattttttta 0 0 71.46 49.52 21.94 Both chr11 9 517630 517702 View Ala AGC tatctactat ttttaaaatt 0 0 74.48 50.69 23.79 Both chr11 10 578607 578702 View Lys TTT gaagaactca ttctttactt 578644 578666 69.00 45.27 23.73 Both chr11 11 513045 512974 View Asp GTC caaataacgt attttttatt 0 0 58.36 32.46 25.90 Both chr11 12 313116 313045 View His GTG acagttgttt ttttattttt 0 0 66.37 40.73 25.64 Both chr11 13 307861 307788 View Val AAC acaattaagt attttttttt 0 0 68.42 45.91 22.51 Both chr11 14 162563 162492 View Arg TCT acaaatatta ttttttacac 0 0 66.88 46.99 19.89 Both chr11 15 141094 141023 View Glu TTC tcctttgtaa ttttcattat 0 0 62.99 35.57 27.42 Both chr11 16 46807 46736 View Thr CGT aaattactca tttgaaattt 0 0 75.96 55.69 20.27 Both   chr12 1 92547 92649 View Pro TGG aagttaataa tttattttct 92583 92613 59.86 38.06 21.80 Both chr12 2 374356 374428 View Arg ACG ataaatcttg atttttttgc 0 0 71.46 49.52 21.94 Both chr12 3 427133 427204 View Asp GTC gtgtttctta aattttttta 0 0 58.36 32.46 25.90 Both chr12 4 628385 628499 View Leu CAA acaaataagt ttatttttgc 628423 628455 55.72 29.41 26.31 Both chr12 5 732092 732192 View Leu TAG aacatacaat ttattttttg 732130 732148 61.03 34.06 26.97 Both chr12 6 734804 734877 View Ile AAT aacaaagttt tttattttta 0 0 71.40 43.78 27.62 Both chr12 7 784354 784453 View Undet ??? ttgttcaacc ctttttttaa 0 0 57.54 36.89 20.65 Eufind chr12 8 793918 793989 View Asp GTC tgtaatataa atttttcatt 0 0 58.36 32.46 25.90 Both chr12 9 797178 797249 View Glu TTC gtagttgtcg atatatttaa 0 0 62.99 35.57 27.42 Both chr12 10 818609 818680 View Arg CCG aatttattat tttaattttt 0 0 57.65 35.31 22.34 Both chr12 11 875375 875470 View Lys TTT gaagaactca ttctttactt 875412 875434 69.00 45.27 23.73 Both chr12 12 1052142 1052069 View Ile AAT tccttttcat ttattttttt 0 0 71.40 43.78 27.62 Both chr12 13 976053 975980 View Asn GTT ggaaataaaa tttatttttt 0 0 77.73 51.70 26.03 Both chr12 14 963052 962969 View Leu TAA tattatcgac gtattttttt 0 0 69.31 38.42 30.89 Both chr12 15 687934 687861 View Val AAC ataaataata ttttttatac 0 0 68.42 45.91 22.51 Both chr12 16 657008 656936 View Ala AGC caagaaaatt agtaaatatt 0 0 74.48 50.69 23.79 Both chr12 17 605434 605302 View Ile TAT tttcgaaaat ctttctcttt 605397 605338 61.58 39.43 22.15 Both chr12 18 592621 592521 View Leu TAG aacatacaat ttattttttg 592583 592565 60.39 33.42 26.97 Both chr12 19 448722 448651 View Gln TTG aagaagttcc tcttttttgc 0 0 68.39 46.17 22.22 Both chr12 20 214956 214884 View Ala TGC acgcgtttta tttatttttt 0 0 76.57 56.87 19.70 Both chr12 21 168024 167943 View Ser AGA atagtcatat ttattttttc 0 0 85.00 55.97 29.03 Both   chr13 1 168795 168883 View Tyr GTA aaaatagtca tatttttttt 168834 168847 68.18 36.72 31.46 Both chr13 2 290800 290871 View Glu TTC tgaaatataa ttttcttttt 0 0 57.99 36.66 21.33 Both chr13 3 352279 352369 View Phe GAA atgaatataa ttaatttttt 352316 352333 69.38 42.12 27.26 Both chr13 4 363063 363134 View His GTG atccaagttt ttttcttttt 0 0 66.37 40.73 25.64 Both chr13 5 463553 463624 View Asp GTC cagaaatttg atttttttat 0 0 58.36 32.46 25.90 Both chr13 6 504894 505007 View Leu CAA acagataagt ttattttttt 504932 504963 54.18 27.86 26.32 Both chr13 7 837927 838015 View Tyr GTA agttaattga tattttttta 837966 837979 68.18 36.72 31.46 Both chr13 8 808316 808245 View Gln CTG agaagaaaaa tcccttcatt 0 0 64.54 45.19 19.35 Both chr13 9 768440 768368 View Ala AGC aataagaaat aattttttgc 0 0 74.48 50.69 23.79 Both chr13 10 747962 747891 View Arg TCT catatgacta ttttttagta 0 0 66.88 46.99 19.89 Both chr13 11 586708 586635 View Val AAC aacttactat tttttttgaa 0 0 68.42 45.91 22.51 Both chr13 12 572954 572882 View Met CAT ataacagaca catttttttt 0 0 70.03 52.29 17.74 Both chr13 13 480692 480620 View Lys CTT acaataagta tctttttttg 0 0 77.79 52.97 24.82 Both chr13 14 420660 420587 View Val AAC acaaataaca tttttatctc 0 0 68.42 45.91 22.51 Both chr13 15 379407 379302 View Trp CCA aataaaagtt atttattttt 379371 379338 67.27 46.42 20.85 Both chr13 16 372517 372444 View Val AAC aataaaacct tttttttagc 0 0 68.42 45.91 22.51 Both chr13 17 321218 321146 View Ala AGC aatacaaatc ttttttattt 0 0 74.48 50.69 23.79 Both chr13 18 259239 259158 View Ser AGA aagttagtat ttattttttg 0 0 85.00 55.97 29.03 Both chr13 19 196170 196068 View Pro TGG aagttcacaa tttttttgat 196134 196104 60.49 38.69 21.80 Both chr13 20 183968 183898 View Gly GCC aataaagatc tatttttttt 0 0 62.73 36.41 26.32 Both chr13 21 131896 131825 View Arg TCT aagaaattta ctttgtttct 0 0 66.88 46.99 19.89 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr14 1 102716 102789 View Asn GTT tatattataa tttatttttt 0 0 77.73 51.70 26.03 Both chr14 2 104805 104877 View Thr AGT caagttctga tattattttt 0 0 78.63 51.71 26.92 Both chr14 3 374871 374961 View Phe GAA agaaaaataa atttgaaaaa 374908 374925 70.15 43.66 26.49 Both chr14 4 443008 443121 View Leu CAA acaaataagt ttattttttt 443046 443077 54.18 27.86 26.32 Both chr14 5 547095 547197 View Pro TGG cgaaataatc gttatctttt 547131 547161 59.08 37.28 21.80 Both chr14 6 568116 568218 View Pro TGG taaaataatc tttatatttt 568152 568182 59.08 37.28 21.80 Both chr14 7 602313 602386 View Ile AAT agataacaat ttcttttttt 0 0 71.40 43.78 27.62 Both chr14 8 632601 632674 View Asn GTT aatttaaagt ttttttttct 0 0 77.73 51.70 26.03 Both chr14 9 726218 726135 View Leu TAA ataaatcttt gtattttttt 0 0 69.31 38.42 30.89 Both chr14 10 631919 631848 View Pro AGG aacttctacc cattgattta 0 0 66.99 49.54 17.45 Both chr14 11 569941 569868 View Ile AAT agataacagt ttcttttttt 0 0 71.40 43.78 27.62 Both chr14 12 560766 560694 View Thr AGT gtaataacgg taattttttt 0 0 78.63 51.71 26.92 Both chr14 13 519170 519100 View Asp GTC tgatttttat attttttgcc 0 0 31.75 20.02 11.73 Eufind chr14 14 96312 96241 View Gly TCC tccaacacat aattttttga 0 0 66.72 41.42 25.30 Both   chr15 1 113802 113874 View Thr AGT cagagattta ttttttttta 0 0 78.63 51.71 26.92 Both chr15 2 228330 228403 View Asn GTT taaaatatta ttatttttga 0 0 77.73 51.70 26.03 Both chr15 3 274674 274774 View Ser GCT aagtaatcgt catttctttt 274711 274729 68.67 44.11 24.56 Both chr15 4 282165 282235 View Gly GCC acatgaaagc tttctttttt 0 0 62.73 36.41 26.32 Both chr15 5 288193 288281 View Tyr GTA aaaatagctt tattttttta 288232 288245 68.81 37.35 31.46 Both chr15 6 301098 301199 View Pro TGG agaaaagatc cttttttact 301134 301163 58.94 37.14 21.80 Both chr15 7 438645 438740 View Lys TTT gaagaactca ttctttattt 438682 438704 69.00 45.27 23.73 Both chr15 8 464452 464553 View Pro TGG aagttaacaa ttttattttt 464488 464517 59.59 37.79 21.80 Both chr15 9 487441 487514 View Asn GTT aacaaagtta ttaatttttt 0 0 77.73 51.70 26.03 Both chr15 10 571959 572030 View Asp GTC acaattaaaa atttttttgc 0 0 58.36 32.46 25.90 Both chr15 11 710202 710273 View Met CAT aagaattagc atttttttac 0 0 74.96 47.76 27.20 Both chr15 12 976418 976490 View Met CAT tattttgtgc atattttttt 0 0 70.03 52.29 17.74 Both chr15 13 980680 980784 View Pro TGG caaattgtat tttttttgca 980716 980748 55.42 33.63 21.79 Both chr15 14 854258 854186 View Ala TGC acagtcatca atttttaagc 0 0 76.57 56.87 19.70 Both chr15 15 663886 663813 View Val AAC aacaaatagt tttttaagaa 0 0 67.95 45.44 22.51 Both chr15 16 594426 594355 View Gly CCC tgattgaaac tctgtttttg 0 0 80.95 59.72 21.23 Both chr15 17 354113 354041 View Thr AGT acggtttact ttttttgtcg 0 0 78.63 51.71 26.92 Both chr15 18 340372 340300 View Arg ACG tcaagatctg atttttttta 0 0 71.46 49.52 21.94 Both chr15 19 226680 226610 View Gly GCC aagaaattca aattttttgt 0 0 62.73 36.41 26.32 Both chr15 20 111033 110962 View Gly TCC caattaaccc tatttttact 0 0 66.72 41.42 25.30 Both   chr16 1 572266 572336 View Gly GCC acaatacttc atttttcccc 0 0 62.73 36.41 26.32 Both chr16 2 582059 582131 View Lys CTT caacaaaaga ttctttttta 0 0 77.79 52.97 24.82 Both chr16 3 689562 689643 View Ser TGA gattattttg tattattttt 0 0 84.16 62.98 21.18 Both chr16 4 744282 744353 View Thr TGT cagtgtaaaa aaattttttc 0 0 77.84 58.39 19.45 Both chr16 5 810672 810745 View Asn GTT cattatttgc tattttttac 0 0 77.73 51.70 26.03 Both chr16 6 819525 819598 View Ile AAT acaatagaat tttatttttg 0 0 71.40 43.78 27.62 Both chr16 7 856898 856970 View Ala AGC aacaagattc ttttaatttt 0 0 74.48 50.69 23.79 Both chr16 8 860375 860445 View Gly GCC taaataacaa gattttattt 0 0 62.73 36.41 26.32 Both chr16 9 880365 880292 View Ile AAT acaatataat tttcttttct 0 0 71.40 43.78 27.62 Both chr16 10 775834 775763 View Cys GCA taattcaaaa ttctttttta 0 0 75.04 50.16 24.88 Both chr16 11 769300 769205 View Lys TTT gaagaactca ttctttactt 769263 769241 69.00 45.27 23.73 Both chr16 12 622628 622537 View Phe GAA attctgatat tttatttttt 622591 622573 69.79 42.53 27.26 Both chr16 13 560286 560195 View Phe GAA tagaaattga tttctatttt 560249 560231 69.79 42.53 27.26 Both chr16 14 435961 435890 View Cys GCA tacaacaaaa ttcttttttt 0 0 75.04 50.16 24.88 Both chr16 15 338918 338847 View Met CAT atgatttagc aatttatttt 0 0 74.96 47.76 27.20 Both chr16 16 210262 210191 View Glu TTC ccaattattg ttttcttttt 0 0 62.99 35.57 27.42 Both chr16 17 56274 56169 View Trp CCA aacaatagtt attaattttt 56238 56205 67.27 46.42 20.85 Both   chrM 1 9374 9444 View SeC TCA taataataat ataataataa 0 0 51.26 0.00 0.00 Both chrM 2 35373 35444 View Glu TTC aataaatata ttcataataa 0 0 38.30 12.64 25.66 Eufind chrM 3 48201 48287 View Ser TGA ttcctcttaa taataataca 0 0 51.45 21.03 30.42 Both chrM 4 63862 63934 View Thr TGT ataaataata ataataataa 0 0 65.36 41.01 24.35 Both chrM 5 64597 64667 View His GTG tataataaag ctataaataa 0 0 48.69 17.52 31.17 Both chrM 6 66095 66176 View Pseudo TAA ctaattaata ataaatatat 0 0 37.52 5.25 32.27 Both chrM 7 66210 66282 View Pseudo TTG tatatataaa tattataata 0 0 29.02 -9.96 38.98 tRNAscan chrM 8 67061 67132 View Lys TTT ataaacaata taatattata 0 0 34.97 18.34 16.63 Both chrM 9 67309 67381 View Arg TCT aataaaaata attatattat 0 0 58.95 27.65 31.30 Both chrM 10 67468 67539 View Pseudo TCC aataataata attaatatta 0 0 46.63 6.19 40.44 Both chrM 11 68322 68393 View Pseudo GTC ataaaataaa tatatttata 0 0 28.24 0.33 27.91 tRNAscan chrM 12 69289 69359 View Arg ACG ttttccgtat atattatatt 0 0 42.27 10.22 32.05 Both chrM 13 69846 69918 View Ala TGC taaatataat ataattatat 0 0 34.42 10.90 23.52 tRNAscan chrM 14 70162 70234 View Ile GAT taatgaaata tattatatat 0 0 43.88 15.52 28.36 Both chrM 15 71433 71504 View Asn GTT tatataatat ataataatat 0 0 51.73 31.73 20.00 Both chrM 16 72632 72705 View Met CAT taattaagga ataatgatta 0 0 50.11 26.79 23.32 Both chrM 17 77431 77502 View Phe GAA attatatata ataataataa 0 0 46.41 22.99 23.42 Eufind chrM 18 78533 78605 View Val TAC tattttataa aatctagata 0 0 63.19 30.58 32.61 Both chrM 19 85035 85107 View Pseudo CAT aatatataaa ataaattaat 0 0 38.75 7.43 31.32 Eufind chrM 20 78162 78091 View Pseudo TTA aattaataag aaataaaaaa 0 0 39.47 8.45 31.02 Eufind

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.