GtRNAdb

tRNAscan-SE Analysis of Rickettsia conorii

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> Genome DB
>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
Rickettsia_conorii_str_Malish_7 1 23116 23190 Glu TTC    0 0 73.92 49.7824.14 Both
Rickettsia_conorii_str_Malish_7 2 103652 103726 Thr GGT    0 0 89.47 63.3026.17 Both
Rickettsia_conorii_str_Malish_7 3 129858 129934 Met CAT    0 0 83.22 59.0624.16 Both
Rickettsia_conorii_str_Malish_7 4 174538 174613 Trp CCA    0 0 78.90 60.7118.19 Both
Rickettsia_conorii_str_Malish_7 5 320146 320222 Met CAT    0 0 87.57 73.6613.91 Both
Rickettsia_conorii_str_Malish_7 6 368645 368719 Asn GTT    0 0 81.23 60.7220.51 Both
Rickettsia_conorii_str_Malish_7 7 484281 484355 Cys GCA    0 0 65.82 46.3819.44 Both
Rickettsia_conorii_str_Malish_7 8 515025 515100 Lys TTT    0 0 91.62 62.7728.85 Both
Rickettsia_conorii_str_Malish_7 9 515115 515191 Ile GAT    0 0 95.68 69.9025.78 Both
Rickettsia_conorii_str_Malish_7 10 696562 696638 Arg CCG    0 0 79.19 50.2728.92 Both
Rickettsia_conorii_str_Malish_7 11 716649 716725 Val GAC    0 0 86.74 60.4226.32 Both
Rickettsia_conorii_str_Malish_7 12 781318 781394 Arg ACG    0 0 76.03 55.9820.05 Both
Rickettsia_conorii_str_Malish_7 13 834174 834260 Leu GAG    0 0 62.56 28.5933.97 Both
Rickettsia_conorii_str_Malish_7 14 838946 839020 Gly GCC    0 0 83.04 69.0813.96 Both
Rickettsia_conorii_str_Malish_7 15 947443 947528 Leu TAA    0 0 74.10 35.8738.23 Both
Rickettsia_conorii_str_Malish_7 16 992644 992720 His GTG    0 0 84.84 72.8012.04 Both
Rickettsia_conorii_str_Malish_7 17 1040211 1040302 Ser GCT    0 0 70.67 43.1127.56 Both
Rickettsia_conorii_str_Malish_7 18 1167246 1167322 Pro TGG    0 0 88.88 64.2324.65 Both
Rickettsia_conorii_str_Malish_7 19 1256518 1256444 Thr TGT    0 0 91.18 72.0619.12 Both
Rickettsia_conorii_str_Malish_7 20 1249347 1249263 Leu TAG    0 0 62.23 31.5730.66 Both
Rickettsia_conorii_str_Malish_7 21 1203341 1203265 Arg TCT    0 0 92.66 70.5822.08 Both
Rickettsia_conorii_str_Malish_7 22 1096177 1096101 Met CAT    0 0 97.58 76.5321.05 Both
Rickettsia_conorii_str_Malish_7 23 936020 935935 Tyr GTA    0 0 72.41 46.2626.15 Both
Rickettsia_conorii_str_Malish_7 24 935799 935726 Gly TCC    0 0 79.61 61.4118.20 Both
Rickettsia_conorii_str_Malish_7 25 920336 920261 Val TAC    0 0 89.91 67.8822.03 Both
Rickettsia_conorii_str_Malish_7 26 822253 822179 Ala TGC    0 0 90.65 72.7317.92 Both
Rickettsia_conorii_str_Malish_7 27 712478 712403 Ala GGC    0 0 81.73 64.5217.21 Both
Rickettsia_conorii_str_Malish_7 28 696830 696757 Gln TTG    0 0 67.26 38.3428.92 Both
Rickettsia_conorii_str_Malish_7 29 682033 681944 Ser TGA    0 0 76.94 50.2326.71 Both
Rickettsia_conorii_str_Malish_7 30 659618 659531 Ser GGA    0 0 81.89 53.9327.96 Both
Rickettsia_conorii_str_Malish_7 31 618512 618436 Asp GTC    0 0 95.14 81.1414.00 Both
Rickettsia_conorii_str_Malish_7 32 208895 208820 Thr CGT    0 0 87.05 63.4923.56 Both
Rickettsia_conorii_str_Malish_7 33 9671 9596 Phe GAA    0 0 92.67 68.1824.49 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.