GtRNAdb

tRNAscan-SE Analysis of Pyrobaculum islandicum DSM 4184

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Predicted tRNA Secondary Structures


Click on "View tRNA" buttons to view 2-D tRNA structures

Cove-predicted tRNA secondary structures rendered by NAVIEW (c) 1988 Robert E. Bruccoleri


chr.trna45 (1-72)	Length: 72 bp
Type: Ala	Anticodon: CGC at 33-35 (33-35)	Score: 82.90
Seq: GGGCCGGTAGTCTAGCGGAAGGATGCCCGCCTCGCGCGCGGGTGAtCCCGGGTTCGAATCCCGGCCGGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna35 (1-72)	Length: 72 bp
Type: Ala	Anticodon: GGC at 33-35 (33-35)	Score: 78.94
Seq: GGGCCGGTAGTCTAGCGGAAGGATGCCCGCTTGGCGTGCGGGAGAtCCCGGGTTCGAATCCCGGCCGGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna21 (1-75)	Length: 75 bp
Type: Ala	Anticodon: TGC at 33-35 (33-35)	Score: 85.44
Seq: GGGCCGGTAGTCTAGCGGAAGGATGCCCGCCTTGCACGCGGGTGAtCCCGGGTTCGAATCCCGGCCGGTCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCGGTAGTCTAGCGGAAGGATGCCC[AGGGGCTAGGCCCCGCATAG]GCCTTGCACGCGGGTGATCCCGGGTTCGAATCCCGGCCGGTCCACCA
                    
chr.trna37 (1-78)	Length: 78 bp
Type: Arg	Anticodon: CCG at 36-38 (36-38)	Score: 84.93
Seq: GGGCCCGTAGCTCAGTCaGGAtAGAGCGGCGGCCTCCGGAGCCGTAGGtCGTGGGTTCAAATCCCACCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTCAGTCAGGATAGAGCGGCGG[AGGACCCAGCTAGGTCCGTCGTG]CCTCCGGAGCCGTAGGTCGTGGGTTCAAATCCCACCGGGCCCGCCA
                    
chr.trna10 (1-75)	Length: 75 bp
Type: Arg	Anticodon: CCT at 36-38 (36-38)	Score: 84.41
Seq: GGGCCCGTAGCTCAGTCaGGAtAGAGCGGCGGCCTCCTAAGCCGTAGGtCGTGGGTTCAAATCCCACCGGGCCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GGGCCCGTAGCTCAGTCAGGATAGAGCGGCGG[AGGACCCAGCTAGGTCCGTCGTG]CCTCCTAAGCCGTAGGTCGTGGGTTCAAATCCCACCGGGCCCG
                    
chr.trna31 (1-75)	Length: 75 bp
Type: Arg	Anticodon: GCG at 36-38 (36-38)	Score: 81.29
Seq: GGGCCCGTAGCTCAGCCtGGAtGGAGCGGCGGCCTGCGGAGCCGTAGGtCGTGGGTTCAAATCCCACCGGGCCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GGGCCCGTAGCTCAGCCTGGATGGAGCGGCGG[AGGACTTGTGGTCCGCCGAG]CCTGCGGAGCCGTAGGTCGTGGGTTCAAATCCCACCGGGCCCG
                    
chr.trna25 (1-78)	Length: 78 bp
Type: Arg	Anticodon: TCG at 36-38 (36-38)	Score: 85.45
Seq: GGGCCCGTAGCTCAGTCaGGTgAGAGCGGCGGCCTTCGGAGCCGTAGGtCCCGGGTTCAAATCCCGGCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna16 (1-78)	Length: 78 bp
Type: Arg	Anticodon: TCT at 36-38 (36-38)	Score: 86.72
Seq: GGGCCCGTAGCTCAGCCtGGAtAGAGCGGCGGCCTTCTAAGCCGTAGGtCGTGGGTTCAAATCCCATCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTCAGCCTGGATAGAGCGGCGG[AGGACCACAGGTCCGCCGAA]CCTTCTAAGCCGTAGGTCGTGGGTTCAAATCCCATCGGGCCCGCCA
                    
chr.trna34 (1-75)   Length: 75 bp
Type: Asn       Anticodon: GTT at 36-38 (36-38) Score: 88.70
Seq: GCCGCCGTAGCTCAGCCcGGTtAGAGCGGCGGGCTGTTAACCCGTAGGtCCCGGGTTCGAATCCCGGCGGCGGCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCCGCCGTAGCTCAGCCCGGTTAGAGCGGCGG[AGGACTCGAGCGGGTCCGCCGAA]GCTGTTAACCCGTAG[GCTGGGCTTCAGGCGGAA]GTCCCGGGTTCGAATCCCGGCGGCGGCG
                    
chr.trna19 (1-76)   Length: 76 bp
Type: Asp       Anticodon: GTC at 35-37 (35-37) Score: 65.02
Seq: GCCGGTAGTATAGCCcGGActAGTATGCGGGCCTGTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCGCCA
Str: >>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<..<....
BHB: GCC[CCGGCTAGACGGGGGCCGTAGCCAGCCGGCTACCCCAACC]GGTAGTATAGCCCGGACTAGTAT[ATGGCCATGTGCCAGCTAAA]GCGGGCCTGTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCGCCA
                    
chr.trna24 (1-89)	Length: 89 bp
Type: Cys	Anticodon: GCA at 35-37 (35-37)	Score: 78.87
Possible intron: 39-50 (39-50)
Seq: GCCCCGGTAGCTCAGTCcGGCAGAGCGGCGGGCTGCAGgctacggcagccACCCGTAGGtCCCGGGTTCAAATCCCGGCCGGGGCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>...................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GCCCCGGTAGCTCAGTCCGGCAGAGCGGCGG[AGGACCGCCAGTCCGCCGAC]GCTGCAGGCTACGGCAGCCACCCGTAGGTCCCGGGTTCAAATCCCGGCCGGGGCTCCA
                    
chr.trna22 (1-76)	Length: 76 bp
Type: Gln	Anticodon: CTG at 35-37 (35-37)	Score: 76.13
Seq: AGCCCGGTCGTCTAGCGGCcaAGGATGCGGGGCTCTGGACCCCGTGGCCCGGGTTCGAATCCCGGCCGGGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
BHB: AGCCCGGTCGTCTAGCGGCCAA[AGGATAACCCGGCTTG]GGATGCGGGGCTCTGGAC[AGTGCCGGAGGCACCCACAA]CCCGTGGCCCGGGTTCGAATCCCGGCCGGGCTACCA
                    
chr.trna41 (1-76)	Length: 76 bp
Type: Gln	Anticodon: TTG at 35-37 (35-37)	Score: 76.69
Seq: AGCCCGGTCGTCTAGCGGCcaAGGATGCGGGGCTTTGGACCCCGTGGCCCGGGTTCGAATCCCGGCCGGGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
BHB: AGCCCGGTCGTCTAGCGGCCAA[AGGACAACCCGGCTTG]GGATGCGGGGCTTTGGAC[AGTGCCGCCGGCACCCACAA]CCCGTGGCCCGGGTTCGAATCCCGGCCGGGCTACCA
                    
chr.trna29 (1-78)	Length: 78 bp
Type: Glu	Anticodon: CTC at 37-39 (37-39)	Score: 89.04
Seq: GCCCCGGTAGTCTAGCCcGGTcaAGGATGCGGGCCTCTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
BHB: GCC[CTGGCGGTGGAGGGGGCCGTAGCCAGCCGGCTACCCCAG]CCGGTAGTCTAGCCCGGTCAAGGATGCGGGCCTC[ATAACCGCAGGGTTAGGCCAG]TCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCACCA
                    
chr.trna30 (1-78)   Length: 78 bp
Type: Glu       Anticodon: TTC at 37-39 (37-39) Score: 86.83
Seq: GCCCCGGTAGTCTAGCCcGGTcaAGGATGTGGGCCTTTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
BHB: GCC[CCGGCTAGACGGGGGCCGTAGCCAGCCGGCTACCCCAG]CCGGTAGTCTAGCCCGGTCAAGGATGTGGGC[AGGTGGCTGAGAGGCTACCCCATAA]CTTTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCACCA
                    
chr.trna3 (1-76)    Length: 76 bp
Type: Gly       Anticodon: CCC at 37-39 (37-39) Score: 86.05
Seq: GCGGCGGTAGTCTAGTCtGGTttAGGATGGCGGCCTCCCAAGCCGTTGAtCCCGGGTTCAAATCCCGGCCGCCGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCGGCGGTAGTCTAGTCtGGTt[TGGACAGTGGGGGAGTTAAAGCCCACTGCCCCGGAG]TAGGATGGCGGCCTCCCAAGCCGTTGATCCCGGGTTCAAATCCCGGCCGCCGCA
                    
chr.trna36 (1-79)   Length: 79 bp
Type: Gly       Anticodon: GCC at 37-39 (37-39) Score: 88.24
Seq: GCGGCGGTAGTCTAGCCtGGTttAGGATGGCGGCCTGCCAAGCCGTTGAtCCCGGGTTCAAATCCCGGCCGCCGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GCGGCGGTAGTCTAGCCtGGTt[TGGACGGTGGGGGAGCCACCGCCCCGGAG]TAGGATGGCGGCCTGCCAAGCCGTTGATCCCGGGTTCAAATCCCGGCCGCCGCACCA
                    
chr.trna2 (1-92)	Length: 92 bp
Type: Gly	Anticodon: TCC at 37-39 (37-39)	Score: 78.84
Possible intron: 41-56 (41-56)
Seq: GCGGCGGTAGTCTAGCCtGGTttAGGATGGCGGCCTTCCAcgccgacggcgaggaaAGCCGTTGAtCCCGGGTTCAAATCCCGGCCGCCGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......................<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna46 (1-72)	Length: 72 bp
Type: His	Anticodon: GTG at 34-36 (34-36)	Score: 69.29
Seq: GCCGCCGTAGTCTAGCGGTtAGGATGGCGGGTTGTGGTCCCGTTGACCCGGGTTCAAATCCCGGCGGCGGCC
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna8 (1-93)    Length: 93 bp
Type: Ile       Anticodon: GAT at 36-38 (36-38) Score: 86.14
Possible intron: 40-54 (40-54)
Seq: GGGCCCGTGGCTTAGCCcGGTtAGAGCGCCCGGCTGATAgccggccggtcagagACCGGGAGGtCCCGGGTTCAAATCCCGGCGGGCCCACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>......................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTGGCTTAGCCCGGTTAGAGCGCCCGGCTGATAGCCGGCCGGTCAGAGACCGGGAGGTCCCG[TCAACCCCCTCGGCGGGGGGTTGGGATAG]GGTTCAAATCCCGGCGGGCCCACCA
                    
chr.trna28 (1-85)	Length: 85 bp
Type: Leu	Anticodon: CAA at 37-39 (37-39)	Score: 77.22
Seq: GCGGGGGTGCCCGAGCCaGGCcaAAGGGGCAGGGCTCAAGACCCTGTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
                    
chr.trna17 (1-85)	Length: 85 bp
Type: Leu	Anticodon: CAG at 37-39 (37-39)	Score: 71.70
Seq: GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTCAGGTCCCTGTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
                    
chr.trna7 (1-88)	Length: 88 bp
Type: Leu	Anticodon: GAG at 37-39 (37-39)	Score: 73.23
Seq: GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTGAGGTCCCTGTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
                    
chr.trna4 (1-88)	Length: 88 bp
Type: Leu	Anticodon: TAA at 37-39 (37-39)	Score: 80.31
Seq: GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGCTTAAGACCCTGTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
                    
chr.trna23 (1-88)	Length: 88 bp
Type: Leu	Anticodon: TAG at 37-39 (37-39)	Score: 73.87
Seq: GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTTAGGTCCCTGTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
                    
chr.trna39 (1-96)	Length: 96 bp
Type: Lys	Anticodon: CTT at 35-37 (35-37)	Score: 80.17
Possible intron: 39-60 (39-60)
Seq: GGGCCCGTAGCTCAGCCtGGTAGAGCGGCGGGCTCTTAggggcggttgccgcccgtagaaACCCGTAGGtCGTGGGTTCGAATCCCACCGGGCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.............................<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GGGCCCGTAGCTCAGCCTGGTAGAGCGGCGG[AGGACCCAGTCGGGCCTGCCGAG]GCTCTTAGGGGCGGTTGCCGCCCGTAGAAACCCGTAGGTCGTGGGTTCGAATCCCACCGGGCCCG
                    
chr.trna33 (1-78)	Length: 78 bp
Type: Lys	Anticodon: TTT at 36-38 (36-38)	Score: 89.28
Seq: GGGCCCGTAGCTCAGCCcGGTtAGAGCGGCGGGCTTTTAACCCGTAGGtCGTGGGTTCGAATCCCACCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTCAGCCCGGTTAGAGCGGCGG[AGGACCCGGCTAGGTCTGCCGAG]GCTTTTAACCCGTAGGTCGTGGGTTCGAATCCCACCGGGCCCGCCA
                    
chr.trna14 (1-77)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (35-37)	Score: 87.10
Seq: AGCGGGGTAGGCCAGCCtGGTAGGCCGCGGGGCTCATAACCCCGAGGtCCCCGGTTCAAATCCGGGCCCCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna18 (1-75)	Length: 75 bp
Type: Met	Anticodon: CAT at 36-38 (36-38)	Score: 88.72
Seq: GCGGCGGTAGCTCAGCCtGGTtAGAGCGCTCGGCTCATAACCGGGAAGtCCCGGGTTCAAATCCCGGCCGCCGCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCGGCGGTAGCTCAGCCTGGTTAGAGCGCTC[TGGGGCAGAGCCCCGCGTAA]GGCTCATAACCGGGAAGTCCCGGGTTCAAATCCCGGCCGCCGCA
                    
chr.trna13 (1-74)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (35-37)	Score: 90.68
Seq: GGGCCCGTAGCTTAGCCcGGCAGAGCGCCCGGCTCATAACCGGGAAGtCCCGGGTTCAAATCCCGGCGGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GGGCCCGTAGCTTAGCCCGGCAGAGCGCCC[ATGGACAAGCCCGGCTGGGCTGTCCAGCGTAA]GGCTCATAACCGGGAAGTCCCGGGTTCAAATCCCGGCGGGCCCA
                    
chr.trna44 (1-75)   Length: 75 bp
Type: Phe       Anticodon: GAA at 33-35 (33-35) Score: 85.84
Seq: GCGGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACCGGGCGGgCCCGGGTTCAAATCCCGGCGGCCGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GCGGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGAC[AGCTCGCCGAGCCTTCAA]CGGGCGGGCCCGGGTTCAAATCCCGGCGGCCGCACCA
                    
chr.trna1 (1-73)	Length: 73 bp
Type: Pro	Anticodon: CGG at 35-37 (35-37)	Score: 72.60
Seq: GGGGCCGTAGTCTAGCCtGGTAGGATGCGCGGTTCGGGTCCGCGTGAtCCCGGGTTCAAATCCCGGCGGCCCC
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<
BHB: GGGGCCGTAGTCTAGCCTGGTAGGAT[AGGGCTTAAAGCCCTCTAAA]GCGCGGTTCGGGTCCGCGTGATCCCGGGTTC[GCGGTAGAGCCGGCCCAC]AAATCCCGGCGGCCCC
                    
chr.trna42 (1-97)	Length: 97 bp
Type: Pro	Anticodon: GGG at 36-38 (36-38)	Score: 78.76
Possible intron: 40-61 (40-61)
Seq: GGGGCCGTAGTCTAGCCtGGCtAGGATGCCGGCCTGGGGacaaaccccgtagatgccagcaCGCCGGTGAtCCCGGGTTCAAATCCCGGCGGCCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.............................<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GGGGCCGTAGTCTAGCCTGGCTAGGAT[TGGGCGTAGCCCCCTGAG]GCCGGCCTGGGGACAAACCCCGTAGATGCCAGCACGCCGGTGATCCCGGGTTCAAATCCCGGCGGCCCCA
                    
chr.trna12 (1-94)   Length: 94 bp
Type: Pro       Anticodon: TGG at 35-37 (35-37) Score: 80.01
Possible intron: 39-55 (39-55)
Seq: GGGGCCGTAGTCTAGCCtGGTAGGATGCGTGGCTTGGGaccgatgtcggcgagagCCCACGTGAtCCCGGGTTCAAATCCCGGCGGCCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>........................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGGCCGTAGTCTAGCCTGGTAGGAT[TGGGTCTCGCCCCCTGAG]GCGTGGCTTGGGACCGATGTCGGCGAGAGCCCACGTGATCCCGGGTTC[GCGGCGGAGCCGGCCTAA]AAATCCCGGCGGCCCCACCA
                    
chr.trna9 (1-104)	Length: 104 bp
Type: Ser	Anticodon: CGA at 35-37 (35-37)	Score: 64.62
Possible intron: 39-54 (39-54)
Seq: GCCGGGGTGGCCGAGCGGCctAAGGCGCGGGACTCGAGagtagaaatccgggccATCCCGTCCCCGTCTaGGGGgCGTGGGTTCAAATCCCACCCCCGGCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......................<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<....
                    
chr.trna6 (1-88)	Length: 88 bp
Type: Ser	Anticodon: GCT at 36-38 (36-38)	Score: 76.56
Seq: GCCGGGGTGGCCGAGTTGGTccAAGGCGCGGGCCTGCTAAGCCCGTCCCCGTTCGGGGgCGTGGGTTCAAATCCCACCCCCGGCGCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<....
                    
chr.trna5 (1-88)	Length: 88 bp
Type: Ser	Anticodon: GGA at 35-37 (35-37)	Score: 75.58
Seq: GCCGGGGTGGCCGAGCGGCccAAGGCGCGGGACTGGAGATCCCGTCCCCGTCTaGGGGgCCCGGGTTCAAATCCCGGCCCCGGCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<....
                    
chr.trna27 (1-100)  Length: 100 bp
Type: Ser       Anticodon: TGA at 35-37 (35-37) Score: 66.04
Possible intron: 39-50 (39-50)
Seq: GCCGGGGTGGCCGAGCGGCccAAGGCGCGGGACTTGAGacttagcaagcaATCCCGTCCCCGTCTaGGGGgCGTGGGTTCAAATCCCACCCCCGGCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>...................<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<....
BHB: GCCGGGGTGGCCGAGCGGCCCAAGGCG[GCCTGCCTCTGTGCAGGCCTGAC]CGGGACTTGAGACTTAGCAAGCAATCCCGTCCCCGTCTAGGGGGCGTGGGTTCAAATCCCACCCCCGGCGCCA
                    
chr.trna32 (1-89)	Length: 89 bp
Type: Thr	Anticodon: CGT at 36-38 (36-38)	Score: 80.33
Possible intron: 40-53 (40-53)
Seq: GCCCCGGTAGCTCAGCCcGGTcGGAGCGCCCGCCTCGTAtctgtcagcgagacAGCGGGAGGtCCCGGGTTCGAATCCCGGCCGGGGCT
Str: >>>>>>>..>>>>..........<<<<.>>>>>.....................<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCCCCGGTAGCTCAGCCCGGTCGGAGCGCCC[TGGGGTAACGCCCCGCGTAT]GCCTCGTATCTGTCAGCGAGACAGCGGGAGGTCCCGGGTTCGAATCCCGGCCGGGGCT
                    
chr.trna43 (1-74)	Length: 74 bp
Type: Thr	Anticodon: GGT at 35-37 (35-37)	Score: 88.13
Seq: GCCCCGGTAGCTCAGCCtGGTGGAGCGCCTCACTGGTAATGAGGAGGtCCCGGGTTCGAATCCCGGCCGGGGCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna20 (1-89)	Length: 89 bp
Type: Thr	Anticodon: TGT at 36-38 (36-38)	Score: 81.52
Possible intron: 40-53 (40-53)
Seq: GCCCCGGTAGCTCAGCCcGGTcGGAGCGCCCGCCTTGTAgctgttggcaagacAGCGGGAGGtCCCGGGTTCGAATCCCGGCCGGGGCT
Str: >>>>>>>..>>>>..........<<<<.>>>>>.....................<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCCCCGGTAGCTCAGCCCGGTCGGAGCGCCC[TGGGGTAACGCCCCGCGTAT]GCCTTGTAGCTGTTGGCAAGACAGCGGGAGGTCCCGGGTTCGAATCCCGGCCGGGGCT
                    
chr.trna38 (1-77)	Length: 77 bp
Type: Trp	Anticodon: CCA at 35-37 (35-37)	Score: 86.36
Seq: GGGGCCGTAGCTCAGCCaGGCAGAGCGGCGGGCTCCAGACCCGTAGGtCGGGGGTTCAAATCCCTCCGGCCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna15 (1-74)   Length: 74 bp
Type: Tyr       Anticodon: GTA at 35-37 (35-37) Score: 80.08
Seq: CGGCCCGTAGCTCAGCGGTcgAGAGCGCCCGGCTGTAGACCGGGCGGtCCCGGGTTCAAATCCCGGCGGGCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: CGGCCCGTAGCTCAGCGGTCGAGAGCGCCCGGCTGTAGAC[AGCCCCTGGGGGGACAGCCACAGAAAACCCCCCAGGCCTATAA]CGGGCGGTCCCGGGTTCAAATCCCGGCGGGCCGA
                    
chr.trna26 (1-90)	Length: 90 bp
Type: Val	Anticodon: CAC at 33-35 (33-35)	Score: 76.32
Possible intron: 37-54 (37-54)
Seq: GGGCCCGTAGTCTAGCGGTATGATGCCCGCCTCACGcggcttctcgcctgagagCGCGGGTGGtCCCGGGTTCAAATCCCGGCGGGCCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.........................<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna40 (1-72)	Length: 72 bp
Type: Val	Anticodon: GAC at 33-35 (33-35)	Score: 85.50
Seq: GGGCCCGTAGTCTAGCGGTAGGATGCCCGCCTGACGCGCGGGTGAtCCCGGGTTCAAATCCCGGCGGGCCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GGGCCCGTAGTCTAGCGGTAGGATGCCC[AGGGGCAGAGCCCCGCAGAA]GCCTGACGCGCGGGTGATCCCGGGTTCAAATCCCGGCGGGCCCA
                    
chr.trna11 (1-100)  Length: 100 bp
Type: Val       Anticodon: TAC at 33-35 (33-35) Score: 77.33
Possible intron: 37-61 (37-61)
Seq: GGGCCCGTAGTCTAGCGGTATGATGCCCGCCTTACAaggcacacccgcaacagcctaggagCGCGGGTGGtCCCGGGTTCGAATCCCGGCGGGCCCACCA
Str: >>>>>>>..>>>.........<<<.>>>>>................................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGTCTAGCGGTATGATGCCCGCCTTACAAGGCACACCCGCAACAGCCTAGGAGCGCGGGTGGTCCCG[TCAACCCCCCGCCGGGGGGTTGGGATAA]GGTTCGAATCCCGGCGGGCCCACCA
         



The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.