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tRNAscan-SE Analysis of Pyrobaculum islandicum DSM 4184

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> UCSC Genome Browser >> Genome DB >> Genome Seq

tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 45 118901 118830 View Ala CGC ttgcaaaaca ctaattttaa 0 0 82.90 71.50 11.40   chr 35 695709 695638 View Ala GGC caagaaacaa cctttacggg 0 0 78.94 67.53 11.41   chr 21 1705194 1705288 View Ala TGC aaataggcga tcttaatacc 0 0 85.44 74.26 11.18     chr 37 459005 458905 View Arg CCG agctggtacg gttacgtttt 0 0 84.93 74.02 10.91   chr 10 741900 741997 View Arg CCT aaggaaagcg ctctaccttt 0 0 84.41 73.28 11.13   chr 31 1020675 1020581 View Arg GCG gtaattggga ctagggtaac 0 0 81.29 70.16 11.13   chr 25 1666595 1666518 View Arg TCG agattttgga caagttttat 0 0 85.45 76.26 9.19   chr 16 1424981 1425078 View Arg TCT agaagaccaa caagtcttga 0 0 86.72 76.66 10.06     chr 34 713260 713145 View Asn GTT tttctatcct ctttcgtatt 0 0 88.70 78.03 10.67     chr 19 1685362 1685497 View Asp GTC agttagagcc ttgtctcaac 0 0 65.02 56.77 8.25     chr 24 1695782 1695674 View Cys GCA aaagagacta atgtccgtct 78 89 78.87 68.99 9.88     chr 22 1704246 1704135 View Gln CTG gtataacccg ttatcttaaa 0 0 76.13 60.05 16.08   chr 41 411327 411216 View Gln TTG gatatagacg ttatctttct 0 0 76.69 60.61 16.08     chr 29 1447364 1447227 View Glu CTC aattgaaggc acctaaactt 0 0 89.04 77.28 11.76   chr 30 1020904 1020764 View Glu TTC attagaaaac ttaattttgt 0 0 86.83 76.06 10.77     chr 3 471455 471566 View Gly CCC aaagagctac tgtttcccca 0 0 86.05 75.81 10.24   chr 36 459148 459041 View Gly GCC atgtcctaca ttaatcttta 0 0 88.24 78.22 10.02   chr 2 335212 335303 View Gly TCC cacctaaatg tctttacccc 335252 335267 78.84 68.60 10.24     chr 46 51892 51821 View His GTG gatgtgtcaa ctttagctat 0 0 69.29 58.15 11.14     chr 8 556155 556276 View Ile GAT atgcatcaaa aatacggatt 556194 556208 86.14 75.60 10.54     chr 28 1456990 1456906 View Leu CAA ataatataca ctagagcgcg 0 0 77.22 56.56 20.66   chr 17 1678319 1678403 View Leu CAG agaaacagag ttgttttggc 0 0 71.70 51.03 20.67   chr 7 552531 552618 View Leu GAG agcaggaagc cctctatagt 0 0 73.23 52.80 20.43   chr 4 471637 471724 View Leu TAA aggatttaag agtctttatt 0 0 80.31 59.87 20.44   chr 23 1699726 1699639 View Leu TAG aagtaagtag cctctttata 0 0 73.87 53.43 20.44     chr 39 431619 431501 View Lys CTT cttgaatgca ctacgttctc 78 99 80.17 68.59 11.58   chr 33 807129 807029 View Lys TTT gaacattgcg ctatcgtctt 0 0 89.28 77.92 11.36     chr 14 1259109 1259185 View Met CAT gggcgccaga aattatcctc 0 0 87.10 64.42 22.68   chr 18 1678448 1678542 View Met CAT ttataaacca tgtctttatg 0 0 88.72 79.18 9.54   chr 13 1127949 1128054 View Met CAT gtaacaaaca cttttgtaaa 0 0 90.68 79.90 10.78     chr 44 318551 318459 View Phe GAA aaacatatag cctccttgtc 0 0 85.84 73.83 12.01     chr 1 91013 91123 View Pro CGG agtaacgtaa accactcaca 0 0 72.60 58.60 14.00   chr 42 409898 409784 View Pro GGG ataaagcaaa ctacctttat 79 100 78.76 68.55 10.21   chr 12 806265 806394 View Pro TGG agtggaagta ttagttttta 80324 80340 80.01 65.68 14.33     chr 9 624754 624857 View Ser CGA gatactacag ttgccttttt 624792 624807 64.62 41.05 23.57   chr 6 543576 543663 View Ser GCT taggggtaga aacccgttta 0 0 76.56 52.98 23.58   chr 5 543361 543448 View Ser GGA agaagactca gtttctgtaa 0 0 75.58 53.57 22.01   chr 27 1552530 1552408 View Ser TGA tataagagac tatgtatctt 80 91 66.04 42.46 23.58     chr 32 858497 858389 View Thr CGT tttagtttaa tcgtcatttt 79 92 80.33 68.78 11.55   chr 43 409363 409290 View Thr GGT tttctatcct ttagctccct 0 0 88.13 74.49 13.64   chr 20 1691338 1691446 View Thr TGT ataaaggcaa ttttatatca 80 93 81.52 69.96 11.56     chr 38 456055 455979 View Trp CCA aaagtagaga ctacggcatc 0 0 86.36 75.70 10.66     chr 15 1395175 1395291 View Tyr GTA aaagaaatga tagttctata 0 0 80.08 64.04 16.04     chr 26 1575116 1575027 View Val CAC gtaaaaaaga tcatgtgtct 1575080 1575063 76.32 63.27 13.05   chr 40 431440 431349 View Val GAC gacatctacg ctaaataccc 0 0 85.50 73.71 11.79   chr 11 806067 806194 View Val TAC agatgtgaga aatctttcgt 806104 806128 77.33 64.51 12.82   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.