GtRNAdb

tRNAscan-SE Analysis of Pyrobaculum islandicum DSM 4184

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> UCSC Genome Browser
>> Genome DB
>> Genome Seq
Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.


[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]


Ala tRNAs

>>>>>>>..>>>>........<<<<.>>>>>...........................<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCGGTAGTCTAGCGGAA.GGATGCCCGCTTGGCG....................TGCGGGAG...........AtCCCGGGTTCGAATCCCGGCCGGTCCA... chr.trna35-AlaGGC Sc: 78.94 >>>>>>>..>>>>........<<<<.>>>>>...........................<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCGGTAGTCTAGCGGAA.GGATGCCCGCCTCGCG....................CGCGGGTG...........AtCCCGGGTTCGAATCCCGGCCGGTCCA... chr.trna45-AlaCGC Sc: 82.90 >>>>>>>..>>>>........<<<<.>>>...............................<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCGGTAGTCTAGCGGAA.GGATGCCCAGGGGCTAggccccgcataggccttgcaCGCGGGTG...........AtCCCGGGTTCGAATCCCGGCCGGTCCACCA chr.trna21-AlaTGC Sc: 85.44

Arg tRNAs

>>>>>>>..>>>>..........<<<<.>>>>.........................................<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTCAGCCtGGAtGGAGCGGCGGAggaCTTGTGgtccgccgagcctgcgg.........A...GCCGTAG...........GtCGTGGGTTCAAATCCCACCGGGCCCG... chr.trna31-ArgGCG Sc: 81.29 >>>>>>>..>>>>..........<<<<.>>>>.........................................<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTCAGTCaGGAtAGAGCGGCGGA......GGAcccagctaggtccgtcgtgcctccggA...GCCGTAG...........GtCGTGGGTTCAAATCCCACCGGGCCCGCCA chr.trna37-ArgCCG Sc: 84.93 >>>>>>>..>>>>..........<<<<.>>>>>.......................................<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTCAGTCaGGTgAGAGCGGCGGC...CTTCGG..........................A...GCCGTAG...........GtCCCGGGTTCAAATCCCGGCGGGCCCGCCA chr.trna25-ArgTCG Sc: 85.45 >>>>>>>..>>>>..........<<<<.>>>>.........................................<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTCAGTCaGGAtAGAGCGGCGGA......GGAcccagctaggtccgtcgtgcctcctaA...GCCGTAG...........GtCGTGGGTTCAAATCCCACCGGGCCCG... chr.trna10-ArgCCT Sc: 84.41 >>>>>>>..>>>>..........<<<<.>>>>.........................................<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTCAGCCtGGAtAGAGCGGCGGA......GGAccacaggtccgccgaaccttcta...A...GCCGTAG...........GtCGTGGGTTCAAATCCCATCGGGCCCGCCA chr.trna16-ArgTCT Sc: 86.72

Asn tRNAs

>>>>>>>..>>>>..........<<<<..>>....................................................<<.................>>>>>.......<<<<<<<<<<<<.... GCCGCCGTAGCTCAGCCcGGTtAGAGCGGCGGAggaCTCGAGcgggtccgccgaagctgttaacccgtaggctgggcttcAGGCGGAA...........GtCCCGGGTTCGAATCCCGGCGGCGGCG... chr.trna34-AsnGTT Sc: 88.70

Asp tRNAs

>>>>>>>...>.>...........<.<..>.>>>..................................................................<<<.<...............>>>>>.......<<<<<<<<<<<<.... GCCCCGGCTAGACGGGGGCcgtA.GCCAGCCGGCTACCCCaaccggtagtatagcccggactagtatatggccatgtgccagctaaagcgggcctgtcgAGCCCGTG...........ACCCGGGTTCAAATCCCGGCCGGGGCGCCA chr.trna19-AspGTC Sc: 65.02

Cys tRNAs

>>>>>>>..>>>>.........<<<<.>>>>............................................<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCGGTAGCTCAGTCcGGCAGAGCGGCGGAGGAccgccagtccgccgacgctgcaggctacggcagccA...CCCGTAG...........GtCCCGGGTTCAAATCCCGGCCGGGGCTCCA chr.trna24-CysGCA Sc: 78.87

Gln tRNAs

>>>>>>>..>>>>...........<<<<...>.>>..........................................<<.<...............>>>>>.......<<<<<<<<<<<<.... AGCCCGGTCGTCTAGCGGCcaaA.GGATAacCCGGCTTGGGAtgcggggctctggacagtgccggaggcacccacAACCCGTG...........GCCCGGGTTCGAATCCCGGCCGGGCTACCA chr.trna22-GlnCTG Sc: 76.13 >>>>>>>..>>>>...........<<<<...>.>>..........................................<<.<...............>>>>>.......<<<<<<<<<<<<.... AGCCCGGTCGTCTAGCGGCcaaA.GGACAacCCGGCTTGGGAtgcggggctttggacagtgccgccggcacccacAACCCGTG...........GCCCGGGTTCGAATCCCGGCCGGGCTACCA chr.trna41-GlnTTG Sc: 76.69

Glu tRNAs

>>>>>>>....>..............<...>.>>>.......................................................................<<<.<...............>>>>>.......<<<<<<<<<<<<.... GCCCTGGCGGTGGAGGGGGccgtA.GCCAGCCGGCTACCCCagccggtagtctagcccggtcaaggatgcgggcctcataaccgcagggttaggccagtcg....AGCCCGTG...........ACCCGGGTTCAAATCCCGGCCGGGGCACCA chr.trna29-GluCTC Sc: 89.04 >>>>>>>...>.>............<.<..>.>>>.......................................................................<<<.<...............>>>>>.......<<<<<<<<<<<<.... GCCCCGGCTAGACGGGGGCcgt.A.GCCAGCCGGCTACCCCagccggtagtctagcccggtcaaggatgtgggcaggtggctgagaggctaccccataactttcgAGCCCGTG...........ACCCGGGTTCAAATCCCGGCCGGGGCACCA chr.trna30-GluTTC Sc: 86.83

Gly tRNAs

>>>>>>>..>>>>...........<<<<.>>>>...................................................<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGCGGTAGTCTAGCCtGGTt.TGGACGGTGG...GGGAgccaccgccccggagtaggatggcggcctgcca.......A..GCCGTTG...........AtCCCGGGTTCAAATCCCGGCCGCCGCACCA chr.trna36-GlyGCC Sc: 88.24 >>>>>>>..>>>>...........<<<<.>>>>...................................................<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGCGGTAGTCTAGTCtGGTt.TGGACAGTGG...GGGAgttaaagcccactgccccggagtaggatggcggcctcccaA..GCCGTTG...........AtCCCGGGTTCAAATCCCGGCCGCCGCA... chr.trna3-GlyCCC Sc: 86.05 >>>>>>>..>>>>...........<<<<.>>>>>.................................................<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGCGGTAGTCTAGCCtGGTttAGGATGGCGGCCTTCCAcgccgacggcgaggaa........................A..GCCGTTG...........AtCCCGGGTTCAAATCCCGGCCGCCGCA... chr.trna2-GlyTCC Sc: 78.84

His tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GCCGCCGTAGTCTAGCGGTtA.GGATGGCGGGTTGTGGTCCCGTTG...........ACCCGGGTTCAAATCCCGGCGGCGGCC... chr.trna46-HisGTG Sc: 69.29

Ile tRNAs

>>>>>>>..>>>>..........<<<<.>>>>.................................................<<<<................>.>>>.......<<<.<<<<<<<<.... GGGCCCGTGGCTTAGCCcGGTtAGAGCGCCCGGCTGATAgccggccggtcagagaccgggaggtcccgtcaaccccctcGGCGGGGGGTTG.......GgATAGGGTTCAAATCCCGGCGGGCCCACCA chr.trna8-IleGAT Sc: 86.14

Leu tRNAs

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTGAGGTCCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCACCA chr.trna7-LeuGAG Sc: 73.23 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTCAGGTCCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCA... chr.trna17-LeuCAG Sc: 71.70 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTTAGGTCCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCACCA chr.trna23-LeuTAG Sc: 73.87 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGGGGTGCCCGAGCCaGGCcaAAGGGGCAGGGCTCAAGACCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCA... chr.trna28-LeuCAA Sc: 77.22 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGCTTAAGACCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCACCA chr.trna4-LeuTAA Sc: 80.31

Lys tRNAs

>>>>>>>..>>>>..........<<<<.>>>>.........................................................<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTCAGCCtGGT.AGAGCGGCGGAGGAcccagtcgggcctgccgaggctcttaggggcggttgccgcccgtagaaA...CCCGTAG...........GtCGTGGGTTCGAATCCCACCGGGCCCG... chr.trna39-LysCTT Sc: 80.17 >>>>>>>..>>>>..........<<<<.>>>>.........................................................<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTCAGCCcGGTtAGAGCGGCGGAGGAcccggctaggtctgccgaggctttta......................A...CCCGTAG...........GtCGTGGGTTCGAATCCCACCGGGCCCGCCA chr.trna33-LysTTT Sc: 89.28

Met tRNAs

>>>>>>>..>>>>..........<<<<.............>>>>>...............................<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTTAGCCcGGC.AGAGCGcccatggacaagCCCGG.CTGGGCtgtccagcgtaaggctcata.A..CCGGGAA...........GtCCCGGGTTCAAATCCCGGCGGGCCCA... chr.trna13-MetCAT Sc: 90.68 >>>>>>>..>>>>..........<<<<.............>>>.>...............................<.<<<................>>>>>.......<<<<<<<<<<<<.... GCGGCGGTAGCTCAGCCtGGTtAGAGCG............CTCTGg..GGCAgagccccgcgtaaggctcataA..CCGGGAA...........GtCCCGGGTTCAAATCCCGGCCGCCGCA... chr.trna18-MetCAT Sc: 88.72 >>>>>>>..>>>>..........<<<<.............>>>>>...............................<<<<<................>>>>>.......<<<<<<<<<<<<.... AGCGGGGTAGGCCAGCCtGGT.AGGCCG............CGGGG.CTCATA.....................A..CCCCGAG...........GtCCCCGGTTCAAATCCGGGCCCCGCTACCA chr.trna14-MetCAT Sc: 87.10

Phe tRNAs

>>>>>>>..>>>>........<<<<.>>>>...........................<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGCCGTAGCTCAGCGGGA.GAGCGCCCGGCTGAAGacagctcgccgagccttcAACGGGCG...........GgCCCGGGTTCAAATCCCGGCGGCCGCACCA chr.trna44-PheGAA Sc: 85.84

Pro tRNAs

>>>>>>>..>>>>..........<<<<...................>>>>>.........................................<<<<<.................>>>>>...........................................<<<<<.<<<<<<<.... GGGGCCGTAGTCTAGCCtGGCtAGGATTgggcgtagccccctgaggCCGGCCTGGGGacaaaccccgtagatgccagca............CGCCGGTG............AtCCCGGGTT..................C..................AAATCCCGG.CGGCCCCA... chr.trna42-ProGGG Sc: 78.76 >>>>>>>..>>>>..........<<<<.....................>.>.........................................<.<...................>>>>>...........................................<<<<<.<<<<<<<.... GGGGCCGTAGTCTAGCCtGGT.AGGATA....................GGGCTTAAAgccctctaaagcgcggttcgggt...........CCGCG.TG............AtCCCGGGTTcgcggtagagccggcccaC..................AAATCCCGG.CGGCCCC.... chr.trna1-ProCGG Sc: 72.60 >>>>>>>..>>>>..........<<<<...................>>>>>.........................................<<<<<.................>>>>>...........................................<<<<<.<<<<<<<.... GGGGCCGTAGTCTAGCCtGGT.AGGAT...................TGGGTCTCGCCccctgaggcgtggcttgggaccgatgtcggcgagAGCCCACGTG..........AtCCCGGGTT..................CgcggcggagccggcctaaAAATCCCGG.CGGCCCCACCA chr.trna12-ProTGG Sc: 80.01

SeC tRNAs

Ser tRNAs

>>>>>>>..>>>.............<<<.>>>>>......................................................<<<<<..>>>............<<<...>>>>>.......<<<<<<<<<<<<.... GCCGGGGTGGCCGAGC.GGCccA.AGGCGCGGGACTGGAG...............................................ATCCCGTCCCCGTCTa.......GGGGgCCCGGGTTCAAATCCCGGCCCCGGCGCCA chr.trna5-SerGGA Sc: 75.58 >>>>>>>..>>>.............<<<.>>>>>......................................................<<<<<..>>>............<<<...>>>>>.......<<<<<<<<<<<<.... GCCGGGGTGGCCGAGC.GGCctA.AGGCGCGGGACTCGAGagtagaaatccgggcc...............................ATCCCGTCCCCGTCTa.......GGGGgCGTGGGTTCAAATCCCACCCCCGGCGCCA chr.trna9-SerCGA Sc: 64.62 >>>>>>>..>>>.............<<<..>..>......................................................<..<........................>>>>>.......<<<<<<<<<<<<.... GCCGGGGTGGCCGAGC.GGCccA.AGGCGGCCTGCCTCTGtgcaggcctgaccgggacttgagacttagcaagcaatcccgtccccgTCTAGGGG..................G.CGTGGGTTCAAATCCCACCCCCGGCGCCA chr.trna27-SerTGA Sc: 66.04 >>>>>>>..>>>.............<<<.>>>>>......................................................<<<<<..>>>............<<<...>>>>>.......<<<<<<<<<<<<.... GCCGGGGTGGCCGAGTTGGTccA.AGGCGCGGGCCTGCTA...............................................AGCCCGTCCCCGTTC........GGGGgCGTGGGTTCAAATCCCACCCCCGGCGCCA chr.trna6-SerGCT Sc: 76.56

Sup tRNAs

Thr tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.............................................<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCGGTAGCTCAGCCtGGT.GGAGCGCCTCACTGGTA.....................................A.TGAGGAG...........GtCCCGGGTTCGAATCCCGGCCGGGGCT... chr.trna43-ThrGGT Sc: 88.13 >>>>>>>..>>>>..........<<<<.>>>.................................................<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCGGTAGCTCAGCCcGGTcGGAGCGCCC...TGGGGtaacgccccgcgtatgcctcgtatctgtcagcgagacA.GCGGGAG...........GtCCCGGGTTCGAATCCCGGCCGGGGCT... chr.trna32-ThrCGT Sc: 80.33 >>>>>>>..>>>>..........<<<<.>>>.................................................<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCGGTAGCTCAGCCcGGTcGGAGCGCCC...TGGGGtaacgccccgcgtatgccttgtagctgttggcaagacA.GCGGGAG...........GtCCCGGGTTCGAATCCCGGCCGGGGCT... chr.trna20-ThrTGT Sc: 81.52

Trp tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCCGTAGCTCAGCCaGGCAGAGCGGCGGGCTCCAGACCCGTAG...........GtCGGGGGTTCAAATCCCTCCGGCCCCACCA chr.trna38-TrpCCA Sc: 86.36

Tyr tRNAs

>>>>>>>..>>>>..........<<<<.>>>>....................................................<<<<................>>>>>.......<<<<<<<<<<<<.... CGGCCCGTAGCTCAGCGGTcgA.GAGCGCCCGGCTGTAGacagcccctggggggacagccacagaaaaccccccaggcctatAACGGGCG...........GtCCCGGGTTCAAATCCCGGCGGGCCGA... chr.trna15-TyrGTA Sc: 80.08

Val tRNAs

>>>>>>>..>>>>........<<<<.>>>..............................................................<<<...................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGTCTAGCGGTA.GGATGCCCA...GGGGcagagccccgcagaagcctgacg..........................C..GCGGGTG..............AtCCCGGGTTCAAATCCCGGCGGGCCCA... chr.trna40-ValGAC Sc: 85.50 >>>>>>>..>>>..........<<<.>>>>>..........................................................<<<<<...................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGTCTAGCGGTA.TGATGCCCGCCTCACGcggcttctcgcctgagag...............................C..GCGGGTG..............GtCCCGGGTTCAAATCCCGGCGGGCCCA... chr.trna26-ValCAC Sc: 76.32 >>>>>>>..>>>..........<<<.>>>>............................................................<<<<...................>..>>.......<<..<<<<<<<<.... GGGCCCGTAGTCTAGCGGTA.TGATGCCCGCCTTACAaggcacacccgcaacagcctaggagcgcgggtggtcccgtcaaccccccG..CCGGGGGGTTG..........GgATAAGGTTCGAATCCCGGCGGGCCCACCA chr.trna11-ValTAC Sc: 77.33

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.