GtRNAdb

tRNAscan-SE Analysis of Pyrobaculum calidifontis JCM 11548

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Predicted tRNA Secondary Structures


Click on "View tRNA" buttons to view 2-D tRNA structures

Cove-predicted tRNA secondary structures rendered by NAVIEW (c) 1988 Robert E. Bruccoleri


chr.trna17 (1-91)	Length: 91 bp
Type: Ala	Anticodon: CGC at 33-35 (33-35)	Score: 75.06
Possible intron: 37-52 (37-52)
Seq: GGGCCGGTAGTCTAGCGGAAGGATGCCCGCCTCGCGcggctagccccaagaaCGCGGGTGAtCCCGGGTTCGAATCCCGGCCGGTCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCGGTAGTCTAGCGGAAGGATGCCCGCCTCGCGCGGCTAGCCCCAAGAACGCGGGTGATCCCGGG[AGGGGAACCCCGGGAA]TTCGAATCCCGGCCGGTCCACCA
                    
chr.trna12 (1-89)	Length: 89 bp
Type: Ala	Anticodon: GGC at 33-35 (33-35)	Score: 71.92
Possible intron: 37-50 (37-50)
Seq: GGGCCGGTAGTCTAGCGGAAGGATGCCCGCTTGGCGtggtagccccagaaTGCGGGAGAtCCCGGGTTCGAATCCCGGCCGGTCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.....................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCGGTAGTCTAGCGGAAGGATGCCCGCTTGGCGTGGTAGCCCCAGAATGCGGGAGATCCCGGG[AGGGAGACCCCCGGGAA]TTCGAATCCCGGCCGGTCCACCA
                    
chr.trna42 (1-88)	Length: 88 bp
Type: Ala	Anticodon: TGC at 33-35 (33-35)	Score: 77.73
Possible intron: 37-49 (37-49)
Seq: GGGCCGGTAGTCTAGCGGAAGGATGCCCGCCTTGCAagaggcccaggaaCGCGGGTGAtCCCGGGTTCGAATCCCGGCCGGTCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>....................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCGGTAGTCTAGCGGAAGGATGCCCGCCTTGCAAGAGGCCCAGGAACGCGGGTGATCCCGGG[AGGGAGACCCCCGGGAA]TTCGAATCCCGGCCGGTCCACCA
                    
chr.trna19 (1-78)	Length: 78 bp
Type: Arg	Anticodon: CCG at 36-38 (36-38)	Score: 85.71
Seq: GGGCCCGTAGCTCAGTCaGGAcAGAGCGGCGGCCTCCGGAGCCGTAGGtCGTGGGTTCAAATCCCACCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTCAGTCAGGACAGAGCGGCGGCCTCCGGAGCCGTAGGTCGTGGGTTC[AGGCAAAGCCGCCCAC]AAATCCCACCGGGCCCGCCA
                    
chr.trna11 (1-78)	Length: 78 bp
Type: Arg	Anticodon: CCT at 36-38 (36-38)	Score: 85.39
Seq: GGGCCCGTAGCTCAGTCaGGAtAGAGCGGCGGCCTCCTAAGCCGTAGGtCGTGGGTTCGAATCCCACCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTCAGTCAGGATAGAGCGGCGGCCTCCTAAGCCGTAGGTCGTGGGTTC[AGGCAAAGCCGCCTAC]GAATCCCACCGGGCCCGCCA
                    
chr.trna1 (1-78)	Length: 78 bp
Type: Arg	Anticodon: GCG at 36-38 (36-38)	Score: 84.99
Seq: GGGCCCGTAGCTCAGCCtGGAtAGAGCGGCGGCCTGCGGAGCCGTAGGtCGTGGGTTCAAATCCCATCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTCAGCCTGGATAGAGCGGCGGCCTGCGGAGCCGTAGGTCGTGGGTTC[AGGCAAAGCCGCCCAA]AAATCCCATCGGGCCCGCCA
                    
chr.trna5 (1-78)	Length: 78 bp
Type: Arg	Anticodon: TCG at 36-38 (36-38)	Score: 87.49
Seq: GGGCCCGTAGCTCAGTCaGGTtAGAGCGGCGGCCTTCGGAGCCGTAGGtCGTGGGTTCAAATCCCACCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTCAGTCAGGTTAGAGCGGCGGCCTTCGGAGCCGTAGGTCGTGGGTTC[AGGCAAAGCCGCCCAA]AAATCCCACCGGGCCCGCCA
                    
chr.trna18 (1-78)	Length: 78 bp
Type: Arg	Anticodon: TCT at 36-38 (36-38)	Score: 86.72
Seq: GGGCCCGTAGCTCAGCCtGGAtAGAGCGGCGGCCTTCTAAGCCGTAGGtCGTGGGTTCAAATCCCATCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTCAGCCTGGATAGAGCGGCGGCCTTCTAAGCCGTAGGTCGTGGGTTC[AGGCAACGCCGCCCAA]AAATCCCATCGGGCCCGCCA
                    
chr.trna34 (1-78)   Length: 78 bp
Type: Asn       Anticodon: GTT at 36-38 (36-38) Score: 91.74
Seq: GCCGCCGTAGCTCAGCCcGGTcAGAGCGGCGGGCTGTTAACCCGTAGGtCCCGGGTTCAAATCCCGGCGGCGGCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GCCGCCGTAGCTCAGCCCGGTCAGAGCGGCGGGCTGTTAACCCGTAG[AGCCAACGGCGCGGAA]GTCCCGGGTTCAAA[AGGGAAACCCCTGAGAC]TCCCGGCGGCGGCGCCA
                    
chr.trna2 (1-75)	Length: 75 bp
Type: Asp	Anticodon: GTC at 37-39 (37-39)	Score: 79.41
Seq: GCCCCGGTAGTATAGCCcGGActAGTATGCGGGCCTGTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCG
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
BHB: GCCCCGGTAGTATAGCCCGGACTAGTATGCGGGCCTG[ACGACATAGTCGGGCCAA]TCGAGCCCGTGACCCGGGTTCAAA[AGGGGGACCCCGGAGAA]TCCCGGCCGGGGCG
                    
chr.trna45 (1-75)	Length: 75 bp
Type: Cys	Anticodon: GCA at 36-38 (36-38)	Score: 83.18
Seq: GCCCCGGTAGCTCAGCGtGGTtAGAGCGGCGGGCTGCAGACCCGTAGGtCCCGGGTTCAAATCCCGGCCGGGGCT
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCCCCGGTAGCTCAGCGTGGTTAG[AGGGCTAATTATCCGACTAG]AGCGGCGGGCTGCAGACCCGTAG[AGCCGCCGGCGCGGAA]GTCCCGGGTTCAAATCCCGGCCGGGGCT
                    
chr.trna43 (1-91)     Length: 91 bp
Type: Gln       Anticodon: CTG at 35-37 (35-37) Score: 68.91
Possible intron: 39-53 (39-53)
Seq: AGCCCGGTCGTCTAGCGGCcaAGGATGCGGGGCTCTGGatccagggaggagaaACCCCGTGGCCCGGGTTCGAATCCCGGCCGGGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>......................<<<<<....>>>>>.......<<<<<<<<<<<<....
BHB: AGCCCGGTCGTCTAGCGGCCAA[CGGGGAACCCGGCTAG]GGATGCGGGGCTCTGGATCCAGGGAGGAGAAACCCCGTGGCCCGGG[AGGAGCAAGCCCGGGAA]TTCGAATCCCGGCCGGGCTACCA
                    
chr.trna21 (1-92)   Length: 92 bp
Type: Gln       Anticodon: TTG at 35-37 (35-37) Score: 69.47
Possible intron: 39-54 (39-54)
Seq: AGCCCGGTCGTCTAGCGGCcaAGGATGCGGGGCTTTGGatccaagggaggagaaACCCCGTGGCCCGGGTTCGAATCCCGGCCGGGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......................<<<<<....>>>>>.......<<<<<<<<<<<<....
BHB: AGCCCGGTCGTCTAGCGGCCAA[CGGGGAACCCGGCTAG]GGATGCGGGGCTTTGGATCCAAGGGAGGAGAAACCCCGTGGCCCGGG[AGGAGCAAGCCCGGGAA]TTCGAATCCCGGCCGGGCTACCA
                    
chr.trna10 (1-78)   Length: 78 bp
Type: Glu       Anticodon: CTC at 37-39 (37-39) Score: 89.04
Seq: GCCCCGGTAGTCTAGCCcGGTcaAGGATGCGGGCCTCTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
BHB: GCCCCGGTAGTCTAGCCCGGTCAA[GGGCCTTAGGCCGATTAA]GGATGCGGGCCTC[ATATACGGGAAGTATAGGCCAA]TCGAGCCCGTGACCCGGGTTCAAA[AGGGGGCACCCCCTGAGAG]TCCCGGCCGGGGCACCA
                    
chr.trna46 (1-78)   Length: 78 bp
Type: Glu       Anticodon: TTC at 37-39 (37-39) Score: 87.05
Seq: GCCCCGGTAGTCTAGCCcGGTcaAGGATGTGGGCCTTTCGAGCCCATGACCCGGGTTCAAATCCCGGCCGGGGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
BHB: GCCCCGGTAGTCTAGCCCGGTCAA[AGGGAGGCCCGACTAG]GGATGTGGGCCTT[ATGTACGCTACAGGCCAA]TCGAGCCCATGACCCGGGTTCAAA[AGGGGAGCCCCTGAGAG]TCCCGGCCGGGGCACCA
                    
chr.trna22 (1-76)	Length: 76 bp
Type: Gly	Anticodon: CCC at 37-39 (37-39)	Score: 86.06
Seq: GCGGCGGTAGTCTAGCCtGGTttAGGATGGCGGCCTCCCAAGCCGTTGAtCCCGGGTTCGAATCCCGGCCGCCGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCGGCGGTAGTCTAGCCTGGTTTAGGATGGCG[AGGGCGCAACCCCCACAG]GCCTCCCAAGCCGTTGATCCCGGGTTCGAATCCCGGCCGCCGCA
                    
chr.trna23 (1-76)	Length: 76 bp
Type: Gly	Anticodon: GCC at 37-39 (37-39)	Score: 86.62
Seq: GCGGCGGTAGTCTAGCCtGGTttAGGATGGCGGCCTGCCAAGCCGTTGAtCCCGGGTTCAAATCCCGGCCGCCGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCGGCGGTAGTCTAGCCTGGTTTAGGATGGCG[AGGGCGCAGCCCCCACAC]GCCTGCCAAGCCGTTGATCCCGGGTTCAAATCCCGGCCGCCGCA
                    
chr.trna29 (1-90)	Length: 90 bp
Type: Gly	Anticodon: TCC at 37-39 (37-39)	Score: 78.53
Possible intron: 41-54 (41-54)
Seq: GCGGCGGTAGTCTAGCCtGGTttAGGATGGCGGCCTTCCAcgctcggcgaggagAGCCGTTGAtCCCGGGTTCGAATCCCGGCCGCCGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.....................<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCGGCGGTAGTCTAGCCTGGTTTAGGATGGCG[AGGGAGCAACCCCCACAA]GCCTTCCACGCTCGGCGAGGAGAGCCGTTGATCCCGGGTTCGAATCCCGGCCGCCGCA
                    
chr.trna26 (1-72)	Length: 72 bp
Type: His	Anticodon: GTG at 34-36 (34-36)	Score: 68.38
Seq: GCCGCCGTAGTCTAGCGGCtAGGATGGCGGGTTGTGGTCCCGTTGACCCGGGTTCAAATCCCGGCGGCGGCC
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
BHB: GCCGCCGTAGTCTAGCGGCTAGGAT[ACGCCCATGCGCCTAAG]GGCGGGTTGTGGTCCCGTTGACCCGGGTTCAAA[AGGGGAAACCCCTGGGAG]TCCCGGCGGCGGCC
                    
chr.trna40 (1-78)	Length: 78 bp
Type: Ile	Anticodon: GAT at 36-38 (36-38)	Score: 94.72
Seq: GGGCCCGTGGCTTAGCCcGGTtAGAGCGCCCGGCTGATAACCGGGAGGtCCCGGGTTCAAATCCCGGCGGGCCCACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTGGCTTAGCCCGGTTAGAGCGCCCGGCTGATAACCGGGAGGTCCCGGG[AGGGTACACCCCGGGAA]TTCAAATCCCGGCGGGCCCACCA
                    
chr.trna38 (1-85)	Length: 85 bp
Type: Leu	Anticodon: CAA at 37-39 (37-39)	Score: 76.22
Seq: GCGGGGGTGCCCGAGCCaGGCcaAAGGGGCAGGGCTCAAGACCCTGTGGCGTAGGCCTaCGTGGGTTCAAATCCCACCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
                    
chr.trna4 (1-85)	Length: 85 bp
Type: Leu	Anticodon: CAG at 37-39 (37-39)	Score: 69.53
Seq: GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTCAGGTCCCTGTGGCGCAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
                    
chr.trna14 (1-85)	Length: 85 bp
Type: Leu	Anticodon: GAG at 37-39 (37-39)	Score: 71.62
Seq: GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTGAGGTCCCTGTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
                    
chr.trna31 (1-85)	Length: 85 bp
Type: Leu	Anticodon: TAA at 37-39 (37-39)	Score: 78.69
Seq: GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGCTTAAGACCCTGTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
                    
chr.trna41 (1-85)	Length: 85 bp
Type: Leu	Anticodon: TAG at 37-39 (37-39)	Score: 72.25
Seq: GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTTAGGTCCCTGTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
                    
chr.trna24 (1-77)	Length: 77 bp
Type: Lys	Anticodon: CTT at 35-37 (35-37)	Score: 90.72
Seq: GGGCCCGTAGCTCAGCCtGGTAGAGCGGCGGGCTCTTAACCCGTAGGtCGTGGGTTCGAATCCCACCGGGCCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTCAGCCTGGTAGAGCGGCGGGCTCTTAACCCGTAGGTCGTGGGTTC[AGGCAAAGCCGCCTAC]GAATCCCACCGGGCCCGCCA
                    
chr.trna37 (1-78)	Length: 78 bp
Type: Lys	Anticodon: TTT at 36-38 (36-38)	Score: 89.28
Seq: GGGCCCGTAGCTCAGCCcGGTtAGAGCGGCGGGCTTTTAACCCGTAGGtCGTGGGTTCGAATCCCACCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTCAGCCCGGTTAGAGCGGCGGGCTTTTAACCCGTAGGTCGTGGGTTC[AGGCAGAGCCGCCTAC]GAATCCCACCGGGCCCGCCA
                    
chr.trna16 (1-74)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (35-37)	Score: 85.48
Seq: AGCGGGGTAGGCCAGCCtGGTAGGCCGCGGGGCTCATAACCCCGAGGtCCCCGGTTCAAATCCGGGCCCCGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: AGCGGGGTAGGCCAGCCTGGTAGGCCGCGGGGCTCATAA[AGCCCCCGCACGGGGGACGTGCAC]CCCCGAGGTCCCCGGTTCAAA[AGGGGGACAACCCCTGAGAC]TCCGGGCCCCGCTA
                    
chr.trna6 (1-77)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (35-37)	Score: 92.29
Seq: GGGCCCGTAGCTTAGCCcGGCAGAGCGCCCGGCTCATAACCGGGAAGtCCCGGGTTCAAATCCCGGCGGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTTAGCCCGGCAGAGCGCCC[TGGGGCCGTGCCCCGCGTAG]GGCTCATAACCGGGAAGTCCCGGG[AGGGTGTCCCCGGGAA]TTCAAATCCCGGCGGGCCCACCA
                    
chr.trna3 (1-92)	Length: 92 bp
Type: Met	Anticodon: CAT at 36-38 (36-38)	Score: 75.90
Possible intron: 40-56 (40-56)
Seq: GCGGCGGTAGCTCAGCCtGGTtGGAGCGCCCGGCTCATAaaggggcaacccatgcaCCCGGGAGGaCCCGGGTTCAAATCCCGGCCGCCGCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>........................<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCGGCGGTAGCTCAGCCTGGTTGGAGCGCCC[TGGGGCCACGCCCCGCGCAA]GGCTCATAAAGGGGCAACCCATGCACCCGGGAGGACCCGGGTTCAAATCCCGGCCGCCGCA
                    
chr.trna30 (1-72)	Length: 72 bp
Type: Phe	Anticodon: GAA at 33-35 (33-35)	Score: 87.17
Seq: GCGGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACCGGGCGGtCCCGGGTTCAAATCCCGGCGGCCGCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCGGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGAC[AGTCGCAAGACCTCCAA]CGGGCGGTCCCGGGTTCAAATCCCGGCGGCCGCA
                    
chr.trna27 (1-77)	Length: 77 bp
Type: Pro	Anticodon: CGG at 35-37 (35-37)	Score: 82.48
Seq: GGGGCCGTAGTCTAGCCtGGTAGGATGCGCGGTTCGGGTCCGCGTGAcCCCGGGTTCAAATCCCGGCGGCCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGGCCGTAGTCTAGCCTGGTAGGAT[AGGGCACATCCCCCTGAA]GCGCGGTTCGGGTCCGCGTGACCCCGGG[AGGGAGACCCCGGGAA]TTCAAATCCCGGCGGCCCCACCA
                    
chr.trna32 (1-107)	Length: 107 bp
Type: Pro	Anticodon: GGG at 36-38 (36-38)	Score: 81.06
Possible intron: 40-68 (40-68)
Seq: GGGGCCGTAGTCTAGCCtGGCtAGGATGCCGGCCTGGGGaagactccccgcggcaggggtctagagaaCGCCGGTGAtCCCGGGTTCAAATCCCGGCGGCCCCACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>....................................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGGCCGTAGTCTAGCCTGGCTAGGATGCCGGCCTGGGGAAGACTCCCCGCGGCAGGGGTCTAGAGAACGCCGGTGATCCCGGG[AGGGGAACCCCGGGAA]TTCAAATCCCGGCGGCCCCACCA
                    
chr.trna20 (1-93)	Length: 93 bp
Type: Pro	Anticodon: TGG at 35-37 (35-37)	Score: 77.50
Possible intron: 39-54 (39-54)
Seq: GGGGCCGTAGTCTAGCCtGGTAGGATGCGTGGCTTGGGaggcgcagcccaagccCCCACGTGAcCCCGGGTTCAAATCCCGGCGGCCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGGCCGTAGTCTAGCCTGGTAGGAT[AGGGCACAGCCCCCCAAG]GCGTGGCTTGGGAGGCGCAGCCCAAGCCCCCACGTGACCCCGGG[AGGGAGACCCCCGGGAA]TTCAAATCCCGGCGGCCCCACCA
                    
chr.trna25 (1-100)	Length: 100 bp
Type: Ser	Anticodon: CGA at 35-37 (35-37)	Score: 66.75
Possible intron: 39-53 (39-53)
Seq: GCCGGGGTGGCCGAGCGGCccAAGGCGCGGGACTCGAGggctaaggcggggatATCCCGTCCCCGTTCaGGGGgCGTGGGTTCAAATCCCACCCCCGGCG
Str: >>>>>>>..>>>...........<<<.>>>>>......................<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<.
                    
chr.trna39 (1-85)	Length: 85 bp
Type: Ser	Anticodon: GCT at 36-38 (36-38)	Score: 72.99
Seq: GCCGGGGTGGCCGAGTTGGTccAAGGCGCGGGCCTGCTAAGCCCGTCCCCATACGGGGgCGTGGGTTCAAATCCCACCCCCGGCG
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.
                    
chr.trna13 (1-98)	Length: 98 bp
Type: Ser	Anticodon: GGA at 35-37 (35-37)	Score: 66.20
Possible intron: 39-51 (39-51)
Seq: GCCGGGGTGGCCGAGCGGCccAAGGCGCGGGACTGGAGatgtatacgagatATCCCGTCCCCGTTCaGGGGgCGTGGGTTCAAATCCCACCCCCGGCG
Str: >>>>>>>..>>>...........<<<.>>>>>....................<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<.
                    
chr.trna7 (1-98)	Length: 98 bp
Type: Ser	Anticodon: TGA at 35-37 (35-37)	Score: 66.41
Possible intron: 39-51 (39-51)
Seq: GCCGGGGTGGCCGAGCGGCccAAGGCGCGGGACTTGAGatgtccacgggagATCCCGTCCCCGTTCaGGGGgCGTGGGTTCAAATCCCACCCCCGGCG
Str: >>>>>>>..>>>...........<<<.>>>>>....................<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<.
                    
chr.trna44 (1-94)   Length: 94 bp
Type: Thr       Anticodon: CGT at 36-38 (36-38) Score: 81.25
Possible intron: 40-55 (40-55)
Seq: GCCCCGGTAGCTCAGCCcGGTcGGAGCGCCCGCCTCGTAggcactctgccgagacAGCGGGAGGtCCCGGGTTCGAATCCCGGCCGGGGCTCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GCCCCGGTAGCTCAGCCCGGTCGG[ACAGCGTCAGCTGGGCCAA]AGCGCCCGCCTCGTAGGCACTCTGCCGAGACAGCGGGAGGTCCCGGGTTCGAATCCCGGCCGGGGCTCCA
                    
chr.trna15 (1-77)   Length: 77 bp
Type: Thr       Anticodon: GGT at 35-37 (35-37) Score: 89.74
Seq: GCCCCGGTAGCTCAGCCtGGTGGAGCGCCTCACTGGTAATGAGGAGGtCCCGGGTTCGAATCCCGGCCGGGGCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GCCCCGGTAGCTCAGCCTGGTGGAGCGCCTCACTGGTAA[TGGCGCATCCGTCGAG]TGAGGAGGTCCCGGGTTCGAATCCCGGCCGGGGCTCCA
                    
chr.trna35 (1-94)   Length: 94 bp
Type: Thr       Anticodon: TGT at 36-38 (36-38) Score: 85.32
Possible intron: 40-55 (40-55)
Seq: GCCCCGGTAGCTCAGCCcGGTcAGAGCGCCCGCCTTGTAggcgggccgccgagacAGCGGGCGGcCCCGGGTTCAAATCCCGGCCGGGGCTCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GCCCCGGTAGCTCAGCCCGGTCAG[ACAGCGGTAGCTGGGCCAA]AGCGCCCGCCTTGTAGGCGGGCCGCCGAGACAGCGGGCGGCCCCGGG[AGGGGACACCCCGGGAA]TTCAAATCCCGGCCGGGGCTCCA
                    
chr.trna28 (1-77)   Length: 77 bp
Type: Trp       Anticodon: CCA at 35-37 (35-37) Score: 80.96
Seq: GGGCCGTTAGCTCAGCCaGGCAGAGCGGCGGGCTCCAGACCCGTAGGcCAGGGGTTCAAATCCCCTACGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCGTTAGCTCAGCCAGGCAGAGCGGCGGGCTCCAGACCCGTAG[AGCCGCCGGCGCGGAA]GCCAGGGGTTCAAA[AGGGGGAACCCCCTGAGAG]TCCCCTACGGCCCACCA
                    
chr.trna33 (1-77)   Length: 77 bp
Type: Tyr       Anticodon: GTA at 35-37 (35-37) Score: 86.28
Seq: CGGCCCGTAGCTCAGCGGTccAGAGCGCCCGGCTGTAGACCGGGCGGtCCCGGGTTCAAATCCCGGCGGGCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: CGGCCCGTAGCTCAGCGGTCCAGAGCGCCCGGCTGTAGAC[AGCCCCTGGGGGTACAACAGCCACAAGCCCCCAGGACCTGTAA]CGGGCGGTCCCGGGTTCAAA[AGGGATAGACCCCTGAGAC]TCCCGGCGGGCCGACCA
                    
chr.trna8 (1-91)    Length: 91 bp
Type: Val       Anticodon: CAC at 33-35 (33-35) Score: 77.77
Possible intron: 37-52 (37-52)
Seq: GGGCCCGTAGTCTAGCGGTAGGATGCCCGCCTCACGcggctttgcctaagagCGCGGGTGAtCCCGGGTTCGAATCCCGGCGGGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGTCTAGCGGTAGGATGCCCGCCTCACGCGGCTTTGCCTAAGAGCGCGGGTGATCCCGGG[AGGGCGGCGCAACGAGCCGACCCGGGAA]TTCGAATCCCGGCGGGCCCACCA
                    
chr.trna36 (1-88)   Length: 88 bp
Type: Val       Anticodon: GAC at 33-35 (33-35) Score: 79.12
Possible intron: 37-49 (37-49)
Seq: GGGCCCGTAGTCTAGCGGTAGGATGCCCGCCTGACGaggacactcggaaCGCGGGTGAtCCCGGGTTCAAATCCCGGCGGGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>....................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGTCTAGCGGTAGGATGCCCGCCTGACGAGGACACTCGGAACGCGGGTGATCCCGGG[AGGACGGCGCCACGAGCCGACCCGGGAA]TTCAAATCCCGGCGGGCCCACCA
                    
chr.trna9 (1-100)	Length: 100 bp
Type: Val	Anticodon: TAC at 33-35 (33-35)	Score: 76.67
Possible intron: 37-61 (37-61)
Seq: GGGCCCGTAGTCTAGCGGTAGGATGCCCGCCTTACAtggcgcacccgcaacagccttagagCGCGGGTGAtCCCGGGTTCGAATCCCGGCGGGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>................................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGTCTAGCGGTAGGATGCCCGCCTTACATGGCGCACCCGCAACAGCCTTAGAGCGCGGGTGATCCCGGG[AGGGCGTACCCCGGGAA]TTCGAATCCCGGCGGGCCCACCA
         



The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.