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tRNAscan-SE Analysis of Pyrobaculum calidifontis JCM 11548

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tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 1 51883 51976 View Arg GCG aacatcggta gcgtcattct 0 0 84.99 74.93 10.06   chr 2 178202 178311 View Asp GTC cgaaagcaca tggggcaccc 0 0 79.41 65.55 13.86   chr 3 184299 184410 View Met CAT agttagaact tgctcccgtt 80 96 75.90 63.77 12.13   chr 4 326178 326262 View Leu CAG ttcactatcg tgccacatta 0 0 69.53 48.87 20.66   chr 5 401005 401098 View Arg TCG gtaggtgagg atcgctcgcc 0 0 87.49 76.58 10.91   chr 6 470725 470837 View Met CAT gttaacacta gcctcttcgc 0 0 92.29 81.75 10.54   chr 7 514425 514522 View Ser TGA aataagtgac tgttctttta 514463 514475 66.41 43.95 22.46   chr 8 533740 533858 View Val CAC ccaccacctg cgcacctcac 533776 533791 77.77 66.21 11.56   chr 9 579410 579526 View Val TAC ataggcacag cgcttatttt 77 101 76.67 65.11 11.56   chr 10 829919 830055 View Glu CTC gggaagtgcg cgtctttatc 0 0 89.04 77.28 11.76   chr 11 876265 876358 View Arg CCT gagaccgatg cttgtcttta 0 0 85.39 74.48 10.91   chr 12 914187 914292 View Ala GGC gtaggggtcg tctttctagc 77 90 71.92 60.75 11.17   chr 13 951001 951098 View Ser GGA agatagaggc tgtcaaatcc 951039 951051 66.20 43.74 22.46   chr 14 1026727 1026811 View Leu GAG ttttctagcg tggctaattc 0 0 71.62 50.96 20.66   chr 15 1028707 1028799 View Thr GGT tgttcagacg ctcttctgtc 0 0 89.74 76.33 13.41   chr 16 1233175 1233292 View Met CAT taaaaaggcg tatgacaccc 0 0 85.48 62.58 22.90   chr 17 1252620 1252726 View Ala CGC cgaggcgttg tctttctacg 77 92 75.06 63.88 11.18   chr 18 1327527 1327620 View Arg TCT atcagcggtg cccatcttca 0 0 86.72 76.66 10.06   chr 19 1469818 1469911 View Arg CCG ggtacgccag cctgtcctca 0 0 85.71 74.80 10.91   chr 20 1598539 1598666 View Pro TGG aaagggcatg cactctcctc 79 94 77.50 63.17 14.33   chr 21 1598752 1598876 View Gln TTG taaagaggcg cgctcttact 79 94 69.47 53.40 16.07   chr 22 1647546 1647639 View Gly CCC gttaatcaca tgtctgagtt 0 0 86.06 75.82 10.24   chr 23 1687978 1688071 View Gly GCC gaagctccca tgcccggttt 0 0 86.62 76.38 10.24   chr 24 1688197 1688289 View Lys CTT gagacgcaca ctttgctttt 0 0 90.72 79.36 11.36   chr 25 1957505 1957604 View Ser CGA aaatagaggc tgtcaaattt 1957543 1957557 66.75 44.29 22.46   chr 26 1897833 1897727 View His GTG gaaacccccg tccatattta 0 0 68.38 57.24 11.14   chr 27 1893796 1893686 View Pro CGG aggtggcaag caccctactc 0 0 82.48 68.01 14.47   chr 28 1883328 1883217 View Trp CCA tagcacgtac ctcttctccg 0 0 80.96 63.97 16.99   chr 29 1821412 1821305 View Gly TCC gttgactaca tgcccttatt 80 93 78.53 68.29 10.24   chr 30 1820891 1820803 View Phe GAA ttagaccaca ttcccttttt 0 0 87.17 74.95 12.22   chr 31 1647452 1647368 View Leu TAA ttcactatcg taccccctct 0 0 78.69 58.03 20.66   chr 32 1601212 1601090 View Pro GGG ggaaaggaac cacctttcta 79 107 81.06 71.07 9.99   chr 33 1329907 1329769 View Tyr GTA aagtaacgac gtatctttgt 0 0 86.28 70.46 15.82   chr 34 1088212 1088102 View Asn GTT cccaaaccca tatttttatt 0 0 91.74 81.29 10.45   chr 35 987244 987115 View Thr TGT catagacacg ccgttttata 77 92 85.32 73.99 11.33   chr 36 924443 924328 View Val GAC acacctcaag attcttacac 924407 924395 79.12 67.56 11.56   chr 37 914056 913963 View Lys TTT gacacgggtg cgtcgtcggt 0 0 89.28 77.92 11.36   chr 38 603197 603113 View Leu CAA ttcactatcg tacccctcct 0 0 76.22 55.56 20.66   chr 39 430352 430268 View Ser GCT cacgagacac tgttttctcg 0 0 72.99 49.19 23.80   chr 40 402377 402283 View Ile GAT acacccccaa caactctcag 0 0 94.72 84.17 10.55   chr 41 375732 375648 View Leu TAG ttcactatcg tcttgtttcc 0 0 72.25 51.59 20.66   chr 42 321593 321489 View Ala TGC cgaggcgttg tctttacgca 76 88 77.73 66.55 11.18   chr 43 320574 320451 View Gln CTG aaaggaggcg cgtttttaca 78 92 68.91 52.83 16.08   chr 44 168716 168604 View Thr CGT cactgcccag ccgttttaca 77 92 81.25 69.92 11.33   chr 45 160958 160848 View Cys GCA aaaagagata tcagccttta 0 0 83.18 73.07 10.11   chr 46 51762 51634 View Glu TTC aggagatgta cgtctttata 0 0 87.05 73.35 13.70   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.