Genomic tRNA Database: Pyrobaculum calidifontis JCM 11548

tRNAscan-SE Analysis of Pyrobaculum calidifontis JCM 11548

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Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs


>>>>>>>..>>>>........<<<<.>>>>.................................<<<<...........................>>>>>.........<<<<<<<<<<<<....
GGGCCGGTAGTCTAGCGGAA.GGATGCCCGCTTGGCGtggtagccccagaatgcgggagatCCCGGGAG.......GGAGa..........CcCCCGGGaaTTCGAATCCCGGCCGGTCCACCA Pyrobaculum_calidifontis_JCM_11548_chr.trna12-AlaGGC Sc: 71.92  
>>>>>>>..>>>>........<<<<.>>>>>...............................<<<<<...>>>>............<<<<....>>>>>.........<<<<<<<<<<<<....
GGGCCGGTAGTCTAGCGGAA.GGATGCCCGCCTCGCGcggctagccccaagaa........CGCGGGTGATCCCGG........GAGGGGAAcCCCGGGaaTTCGAATCCCGGCCGGTCCACCA Pyrobaculum_calidifontis_JCM_11548_chr.trna17-AlaCGC Sc: 75.06  
>>>>>>>..>>>>........<<<<.>>>>.................................<<<<...........................>>>>>.........<<<<<<<<<<<<....
GGGCCGGTAGTCTAGCGGAA.GGATGCCCGCCTTGCAagaggcccaggaacgcgggtgat.CCCGGGAG.......GGAGa..........CcCCCGGGaaTTCGAATCCCGGCCGGTCCACCA Pyrobaculum_calidifontis_JCM_11548_chr.trna42-AlaTGC Sc: 77.73  


Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......................................................<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCtGGAtAGAGCGGCGGCCTGCGGAGCCGTAG...........GtCGTGGGTT................CaggcaaagccgcccaaA................AATCCCATCGGGCCCGCCA Pyrobaculum_calidifontis_JCM_11548_chr.trna1-ArgGCG Sc: 84.99  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......................................................<<<<<<<<<<<<....
GGGCCCGTAGCTCAGTCaGGAcAGAGCGGCGGCCTCCGGAGCCGTAG...........GtCGTGGGTTcaggcaaagccgcccaC................A................AATCCCACCGGGCCCGCCA Pyrobaculum_calidifontis_JCM_11548_chr.trna19-ArgCCG Sc: 85.71  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......................................................<<<<<<<<<<<<....
GGGCCCGTAGCTCAGTCaGGTtAGAGCGGCGGCCTTCGGAGCCGTAG...........GtCGTGGGTT................CaggcaaagccgcccaaA................AATCCCACCGGGCCCGCCA Pyrobaculum_calidifontis_JCM_11548_chr.trna5-ArgTCG Sc: 87.49  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......................................................<<<<<<<<<<<<....
GGGCCCGTAGCTCAGTCaGGAtAGAGCGGCGGCCTCCTAAGCCGTAG...........GtCGTGGGTT................C................AggcaaagccgcctacgAATCCCACCGGGCCCGCCA Pyrobaculum_calidifontis_JCM_11548_chr.trna11-ArgCCT Sc: 85.39  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......................................................<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCtGGAtAGAGCGGCGGCCTTCTAAGCCGTAG...........GtCGTGGGTT................CaggcaacgccgcccaaA................AATCCCATCGGGCCCGCCA Pyrobaculum_calidifontis_JCM_11548_chr.trna18-ArgTCT Sc: 86.72  


Asn tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<....>>........<<.....>>>>>.........................<<<<<<<<<<<<....
GCCGCCGTAGCTCAGCCcGGTcAGAGCGGCGGGCTGTTAACCCGTAGAGCCAACGGCGCGGAAGtCCCGGGTTCAAAagggaaacccctgagact.CCCGGCGGCGGCGCCA Pyrobaculum_calidifontis_JCM_11548_chr.trna34-AsnGTT Sc: 91.74  


Asp tRNAs


>>>>>>>..>>>>...........<<<<.>>>>>.........................<<<<<...............>>>>>.........................<<<<<<<<<<<<....
GCCCCGGTAGTATAGCCcGGActAGTATGCGGGCCTGACGacatagtcgggccaatcgAGCCCGTG...........ACCCGGGTTCAAAagggggaccccggagaat.CCCGGCCGGGGCG... Pyrobaculum_calidifontis_JCM_11548_chr.trna2-AspGTC Sc: 79.41  


Cys tRNAs


>>>>>>>..>>>>..............................<<<<.>>>>>.......<<<<<....>>>......<<<.....>>>>>.......<<<<<<<<<<<<....
GCCCCGGTAGCTCAGCGtGGTtAgagggctaattatccgactaGAGCGGCGGGCTGCAGACCCGTAGAGCCGCCGGCGCGGAAGtCCCGGGTTCAAATCCCGGCCGGGGCT... Pyrobaculum_calidifontis_JCM_11548_chr.trna45-CysGCA Sc: 83.18  


Gln tRNAs


>>>>>>>..>>>>..........................<<<<.>>>>>.......................<<<<<....>..........<.....>>>>>.........<<<<<<<<<<<<....
AGCCCGGTCGTCTAGCGGCcAacggggaacccggctag.GGATGCGGGGCTCTGGatccagggaggagaa.ACCCCGTGGCCCGGGAG..GAGCAAgCCCGGGaaTTCGAATCCCGGCCGGGCTACCA Pyrobaculum_calidifontis_JCM_11548_chr.trna43-GlnCTG Sc: 68.91  
>>>>>>>..>>>>..........................<<<<.>>>>>.......................<<<<<....>..........<.....>>>>>.........<<<<<<<<<<<<....
AGCCCGGTCGTCTAGCGGCcAacggggaacccggctag.GGATGCGGGGCTTTGGatccaagggaggagaaACCCCGTGGCCCGGGAG..GAGCAAgCCCGGGaaTTCGAATCCCGGCCGGGCTACCA Pyrobaculum_calidifontis_JCM_11548_chr.trna21-GlnTTG Sc: 69.47  


Glu tRNAs


>>>>>>>..>>>>.............................<<<<.>>>>>.............................<<<<<...............>>>>>...........................<<<<<<<<<<<<....
GCCCCGGTAGTCTAGCCcGGTcAagggccttaggccgattaaGGATGCGGGCCTCATAtacgggaagtataggccaatcgAGCCCGTG...........ACCCGGGTTCAAAagggggcaccccctgagagt.CCCGGCCGGGGCACCA Pyrobaculum_calidifontis_JCM_11548_chr.trna10-GluCTC Sc: 89.04  
>>>>>>>..>>>>.............................<<<<.>>>>>.............................<<<<<...............>>>>>...........................<<<<<<<<<<<<....
GCCCCGGTAGTCTAGCCcGGTcAaagggaggcccgactag..GGATGTGGGCCTTATGtacgctacaggccaatcg....AGCCCATG...........ACCCGGGTTCAAAaggggagcccctgagagt...CCCGGCCGGGGCACCA Pyrobaculum_calidifontis_JCM_11548_chr.trna46-GluTTC Sc: 87.05  


Gly tRNAs


>>>>>>>..>>>>...........<<<<..................>>.>................................................<<<................>>>>>.......<<<<<<<<<<<<....
GCGGCGGTAGTCTAGCCtGGTttAGGATG.................GC.GAGGGCGCAgcccccacacgcctgcca.................A..GCCGTTG...........AtCCCGGGTTCAAATCCCGGCCGCCGCA... Pyrobaculum_calidifontis_JCM_11548_chr.trna23-GlyGCC Sc: 86.62  
>>>>>>>..>>>>...........<<<<..................>>.>>>............................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGCGGTAGTCTAGCCtGGTttAGGATGgcgagggcgcaacccccACaGGCCTCCCA...................................A..GCCGTTG...........AtCCCGGGTTCGAATCCCGGCCGCCGCA... Pyrobaculum_calidifontis_JCM_11548_chr.trna22-GlyCCC Sc: 86.06  
>>>>>>>..>>>>...........<<<<..................>>.>................................................<<<................>>>>>.......<<<<<<<<<<<<....
GCGGCGGTAGTCTAGCCtGGTttAGGATG.................GC.GA...GGGAgcaacccccacaagccttccacgctcggcgaggagA..GCCGTTG...........AtCCCGGGTTCGAATCCCGGCCGCCGCA... Pyrobaculum_calidifontis_JCM_11548_chr.trna29-GlyTCC Sc: 78.53  


His tRNAs


>>>>>>>..>>>>.........<<<<.>.>>..............................................<<..<................>>.>>.......<<.<<<<<<<<<....
GCCGCCGTAGTCTAGCGGCtA.GGATACGCCCATGCGcctaagggcgggttgtggtcccgttgacccgggttcaaaAGGG.GAA...........AcCCCTGGGAGT...CCCGGCGGCGGCC... Pyrobaculum_calidifontis_JCM_11548_chr.trna26-HisGTG Sc: 68.38  


Ile tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<..>>.>>......<<.<<...>>>>>.........<<<<<<<<<<<<....
GGGCCCGTGGCTTAGCCcGGTtAGAGCGCCCGGCTGATAACCGGGAGGTCCCGGGAG.GGTACAcCCCGGGaaTTCAAATCCCGGCGGGCCCACCA Pyrobaculum_calidifontis_JCM_11548_chr.trna40-IleGAT Sc: 94.72  


Leu tRNAs


>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTGAGGTCCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCA... Pyrobaculum_calidifontis_JCM_11548_chr.trna14-LeuGAG Sc: 71.62  
>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTCAGGTCCCTGTGGCGCAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCA... Pyrobaculum_calidifontis_JCM_11548_chr.trna4-LeuCAG Sc: 69.53  
>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTTAGGTCCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCA... Pyrobaculum_calidifontis_JCM_11548_chr.trna41-LeuTAG Sc: 72.25  
>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGCcaAAGGGGCAGGGCTCAAGACCCTGTGGCGTAG....GCCTaCGTGGGTTCAAATCCCAC.CCCCCGCA... Pyrobaculum_calidifontis_JCM_11548_chr.trna38-LeuCAA Sc: 76.22  
>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGCTTAAGACCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCA... Pyrobaculum_calidifontis_JCM_11548_chr.trna31-LeuTAA Sc: 78.69  


Lys tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......................<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCtGGT.AGAGCGGCGGGCTCTTAACCCGTAG...........GtCGTGGGTTCAggcaaagccgcctacgAATCCCACCGGGCCCGCCA Pyrobaculum_calidifontis_JCM_11548_chr.trna24-LysCTT Sc: 90.72  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......................<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCcGGTtAGAGCGGCGGGCTTTTAACCCGTAG...........GtCGTGGGTTCAggcagagccgcctacgAATCCCACCGGGCCCGCCA Pyrobaculum_calidifontis_JCM_11548_chr.trna37-LysTTT Sc: 89.28  


Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>...................................................<<<................>>>>>..............................<<<<<<<<<<<<....
GGGCCCGTAGCTTAGCCcGGC.AGAGCGCCC...TGGGGccgtgccccgcgtagggctcataaccgggaagtcccgggA...GGGTG...........TcCCCGGGaaTTCAAA.....................TCCCGGCGGGCCCACCA Pyrobaculum_calidifontis_JCM_11548_chr.trna6-MetCAT Sc: 92.29  
>>>>>>>..>>>>..........<<<<.>>>>>...............................................<<<<<................>>>>>..............................<<<<<<<<<<<<....
AGCGGGGTAGGCCAGCCtGGT.AGGCCGCGGGGCTCATAaagcccccgcacgggggacgtgca...............C.CCCCGAG...........GtCCCCGG..TTCAAAagggggacaacccctgagact.CCGGGCCCCGCTA... Pyrobaculum_calidifontis_JCM_11548_chr.trna16-MetCAT Sc: 85.48  
>>>>>>>..>>>>..........<<<<.>>>.>...............................................<.<<<................>>>>>..............................<<<<<<<<<<<<....
GCGGCGGTAGCTCAGCCtGGTtGGAGCGCCCTGGGGCCAcgccccgcgcaaggctcataaaggggcaacccatgca..C.CCGGGAG...........GaCCCGGG..TTCAAA.....................TCCCGGCCGCCGCA... Pyrobaculum_calidifontis_JCM_11548_chr.trna3-MetCAT Sc: 75.90  


Phe tRNAs


>>>>>>>..>>>>........<<<<.>>>>..........................<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGCCGTAGCTCAGCGGGA.GAGCGCCCGGCTGAAGacagtcgcaagacctccAACGGGCG...........GtCCCGGGTTCAAATCCCGGCGGCCGCA... Pyrobaculum_calidifontis_JCM_11548_chr.trna30-PheGAA Sc: 87.17  


Pro tRNAs


>>>>>>>..>>>>..........<<<<........>>>>>....................................................<<<<<...>>>>........<<<<....>>>>>.........<<<<<.<<<<<<<....
GGGGCCGTAGTCTAGCCtGGCtAGGATG.......CCGGCCTGGGGaagactccccgcggcaggggtctagagaa................CGCCGGTGATCCCGG....GAGGGGAAcCCCGGGaaTTCAAATCCCGG.CGGCCCCACCA Pyrobaculum_calidifontis_JCM_11548_chr.trna32-ProGGG Sc: 81.06  
>>>>>>>..>>>>..........<<<<........>>>.>....................................................<.<<<.......................>>>>>.........<<<<<.<<<<<<<....
GGGGCCGTAGTCTAGCCtGGT.AGGATAgggcacaTCCCCCTGAAGcgcggttcgggtccgcgtgaccccg....................GGAGGGAG..................AcCCCGGGaaTTCAAATCCCGG.CGGCCCCACCA Pyrobaculum_calidifontis_JCM_11548_chr.trna27-ProCGG Sc: 82.48  
>>>>>>>..>>>>..........<<<<........>..>>....................................................<<..<.......................>>>>>.........<<<<<.<<<<<<<....
GGGGCCGTAGTCTAGCCtGGT.AGGATAgggca..CAGCCCCCCAAggcgtggcttgggaggcgcagcccaagcccccacgtgaccccgggAGGGAGA...................CcCCCGGGaaTTCAAATCCCGG.CGGCCCCACCA Pyrobaculum_calidifontis_JCM_11548_chr.trna20-ProTGG Sc: 77.50  


SeC tRNAs




Ser tRNAs


>>>>>>>..>>>.............<<<.>>>>>......................<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGGCCGAGC.GGCccA.AGGCGCGGGACTGGAGatgtatacgagat..ATCCCGTCCCCGTTCa....GGGGgCGTGGGTTCAAATCCCACCCCCGGCG... Pyrobaculum_calidifontis_JCM_11548_chr.trna13-SerGGA Sc: 66.20  
>>>>>>>..>>>.............<<<.>>>>>......................<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGGCCGAGC.GGCccA.AGGCGCGGGACTCGAGggctaaggcggggatATCCCGTCCCCGTTCa....GGGGgCGTGGGTTCAAATCCCACCCCCGGCG... Pyrobaculum_calidifontis_JCM_11548_chr.trna25-SerCGA Sc: 66.75  
>>>>>>>..>>>.............<<<.>>>>>......................<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGGCCGAGC.GGCccA.AGGCGCGGGACTTGAGatgtccacgggag..ATCCCGTCCCCGTTCa....GGGGgCGTGGGTTCAAATCCCACCCCCGGCG... Pyrobaculum_calidifontis_JCM_11548_chr.trna7-SerTGA Sc: 66.41  
>>>>>>>..>>>.............<<<.>>>>>......................<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGGCCGAGTTGGTccA.AGGCGCGGGCCTGCTA...............AGCCCGTCCCCATAC.....GGGGgCGTGGGTTCAAATCCCACCCCCGGCG... Pyrobaculum_calidifontis_JCM_11548_chr.trna39-SerGCT Sc: 72.99  


Sup tRNAs




Thr tRNAs


>>>>>>>..>>>>.................................................<<<<.>>>>>.......................<<<<<.........................>>>>>.........<<<<<<<<<<<<....
GCCCCGGTAGCTCAGCCtGGT.....................G...................GAGCGCCTCACTGGTAatggcgcatccgtcgaGTGAGGAG....................GtCCCGGG..TTCGAATCCCGGCCGGGGCTCCA Pyrobaculum_calidifontis_JCM_11548_chr.trna15-ThrGGT Sc: 89.74  
>>>>>>>..>>>...................................................<<<.>>>>>.......................<<<<<.........................>>>>>.........<<<<<<<<<<<<....
GCCCCGGTAGCTCAGCCcGGTcggacagcgtcagctgggcca....................AAGCGCCCGCCTCGTAggcactctgccgagacAGCGGGAG....................GtCCCGGG..TTCGAATCCCGGCCGGGGCTCCA Pyrobaculum_calidifontis_JCM_11548_chr.trna44-ThrCGT Sc: 81.25  
>>>>>>>..>>>...................................................<<<.>>>>>.......................<<<<<..>.>>>..........<<<.<...>>>>>.........<<<<<<<<<<<<....
GCCCCGGTAGCTCAGCCcGGTc....................AgacagcggtagctgggccaAAGCGCCCGCCTTGTAggcgggccgccgagacAGCGGGCGGCCCCGGGAG.....GGGACAcCCCGGGaaTTCAAATCCCGGCCGGGGCTCCA Pyrobaculum_calidifontis_JCM_11548_chr.trna35-ThrTGT Sc: 85.32  


Trp tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>......<<<.....>>>>>...........................<<<<<<<<<<<<....
GGGCCGTTAGCTCAGCCaGGCAGAGCGGCGGGCTCCAGACCCGTAGAGCCGCCGGCGCGGAAGcCAGGGGTTCAAAagggggaaccccctgagagt.CCCCTACGGCCCACCA Pyrobaculum_calidifontis_JCM_11548_chr.trna28-TrpCCA Sc: 80.96  


Tyr tRNAs


>>>>>>>..>>>>..........<<<<.>>>>....................................................<<<<................>>>>>...........................<<<<<<<<<<<<....
CGGCCCGTAGCTCAGCGGTccA.GAGCGCCCGGCTGTAGacagcccctgggggtacaacagccacaagcccccaggacctgtAACGGGCG...........GtCCCGGGTTCAAAagggatagacccctgagact.CCCGGCGGGCCGACCA Pyrobaculum_calidifontis_JCM_11548_chr.trna33-TyrGTA Sc: 86.28  


Val tRNAs


>>>>>>>..>>>>........<<<<.>.>>................................................<<.<..........................>>>>>.........<<<<<<<<<<<<....
GGGCCCGTAGTCTAGCGGTA.GGATGCCCGCCTGACGaggacactcggaacgcgggtgatcccgggaggacggcgcCACGAGCC.....................GaCCCGGGaaTTCAAATCCCGGCGGGCCCACCA Pyrobaculum_calidifontis_JCM_11548_chr.trna36-ValGAC Sc: 79.12  
>>>>>>>..>>>>........<<<<.>>>>................................................<<<<..>>>...............<<<...>>>>>.........<<<<<<<<<<<<....
GGGCCCGTAGTCTAGCGGTA.GGATGCCCGCCTCACGcggctttgcctaagagcgcgggtgat.............CCCGGGAGGGCGGCGCAA....C.GAGCCGaCCCGGGaaTTCGAATCCCGGCGGGCCCACCA Pyrobaculum_calidifontis_JCM_11548_chr.trna8-ValCAC Sc: 77.77  
>>>>>>>..>>>>........<<<<.>>>>................................................<<<<..........................>>>>>.........<<<<<<<<<<<<....
GGGCCCGTAGTCTAGCGGTA.GGATGCCCGCCTTACAtggcgcacccgcaacagccttagagcgcgggtgat....CCCGGGAG......GGCGt..........AcCCCGGGaaTTCGAATCCCGGCGGGCCCACCA Pyrobaculum_calidifontis_JCM_11548_chr.trna9-ValTAC Sc: 76.67

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.