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tRNAscan-SE Analysis of Pyrobaculum arsenaticum DSM 13514

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tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 1 78069 78162 View Arg GCG cggggaaaca gcgatccggt 0 0 82.91 72.00 10.91   chr 2 217834 217934 View Met CAT ctagacacaa ctggctctat 0 0 92.36 81.58 10.78   chr 3 650859 650930 View Val CAC agacggtgct cttttgaaaa 0 0 85.94 72.90 13.04   chr 4 666900 667002 View Ser TGA ctagatacca tcactcttta 666938 666952 67.82 45.59 22.23   chr 5 704452 704523 View Ala CGC cgtaaagcgg cttctattaa 0 0 83.02 71.62 11.40   chr 6 1155235 1155325 View Pro GGG gaggagcccg ctgaccgtta 1155274 1155289 79.74 69.53 10.21   chr 7 1155444 1155516 View Gln CTG cgtctggccc cttccgaatc 0 0 77.16 60.86 16.30   chr 8 1351184 1351268 View Leu TAG aaaacaccta tcacctttct 0 0 72.25 51.59 20.66   chr 9 1582574 1582671 View Ser GGA aaagaacaca cctttcttca 1582612 1582624 68.20 47.46 20.74   chr 10 1582747 1582831 View Ser GCT agtggattca cttttccttg 0 0 74.94 51.14 23.80   chr 11 1696536 1696626 View Pro TGG agaagggtag ctttacgtca 1696575 1696590 76.24 61.68 14.56   chr 12 1755536 1755610 View Asn GTT gcggtctgta ccttgctttt 0 0 90.12 79.45 10.67   chr 13 1877894 1877987 View Met CAT aaggattaca tctttactgc 0 0 86.60 76.62 9.98   chr 14 2023269 2023343 View Pro CGG ggggagtaac ctggcctttt 0 0 79.25 64.55 14.70   chr 15 2095913 2095791 View Ser CGA gtaaaaacca ctaaacgttt 2095875 2095841 66.90 45.09 21.80   chr 16 1877584 1877497 View Leu CAG tatgaaacag cctttaagcc 0 0 73.31 52.88 20.43   chr 17 1866633 1866539 View Arg TCG gcattgacac gtatctgtac 0 0 90.14 79.24 10.90   chr 18 1804416 1804300 View Asp GTC agagcatctt acctttttct 0 0 81.03 67.39 13.64   chr 19 1797349 1797255 View Thr CGT agaggcgcca ttatcctggc 0 0 89.11 77.55 11.56   chr 20 1786437 1786342 View Cys GCA aaaattagga tcgataccat 0 0 86.24 76.13 10.11   chr 21 1707485 1707411 View Ala GGC ggtagagcga tttttcctct 0 0 80.55 69.37 11.18   chr 22 1695343 1695266 View Lys TTT agtggcagag gtatctcggc 0 0 89.28 77.92 11.36   chr 23 1695126 1695029 View Val TAC caaatgtaaa ctcctctttt 1695089 1695065 72.82 61.04 11.78   chr 24 1693504 1693410 View Thr TGT agaggcgcca ctatacacta 0 0 89.67 78.11 11.56   chr 25 1623365 1623289 View Trp CCA aatcttgcac acttatcttc 0 0 83.88 73.69 10.19   chr 26 1534612 1534537 View Gly CCC taacagccat tagcccgcct 0 0 86.06 75.82 10.24   chr 27 1531664 1531580 View Leu TAA ttagaagtag ccttttctct 0 0 78.05 57.39 20.66   chr 28 1482655 1482579 View Lys CTT tttccaacca gcttccttct 0 0 90.72 79.36 11.36   chr 29 1482433 1482342 View Val GAC ctattgtaaa cttctcccaa 0 0 85.50 73.71 11.79   chr 30 1482289 1482212 View Arg CCG taaaacacag gttttcaacc 0 0 87.46 76.56 10.90   chr 31 1479953 1479841 View Gly GCC aaacacatga cgccggtctt 0 0 88.24 78.22 10.02   chr 32 1380373 1380299 View Ile GAT ataggcgaac ctgtacaaag 0 0 93.10 82.33 10.77   chr 33 1347059 1346988 View Ala TGC gggtaaagcg cttattacaa 0 0 83.83 72.42 11.41   chr 34 1346043 1345971 View Gln TTG ttgggcggtt cttcttttga 0 0 77.72 61.42 16.30   chr 35 1155809 1155722 View Leu GAG agtggacttg cctttctaga 0 0 73.23 52.80 20.43   chr 36 1141743 1141651 View Thr GGT ttagctccta ttcgtccctc 0 0 88.77 75.13 13.64   chr 37 1045442 1045371 View His GTG gatgcggaga ccttaatttt 0 0 69.29 58.15 11.14   chr 38 895710 895620 View Gly TCC aatgacaata tgtccctcct 895670 895656 78.42 68.18 10.24   chr 39 890060 889986 View Phe GAA ctaaaggtag ccttctatct 0 0 88.79 76.79 12.00   chr 40 783243 783153 View Met CAT caacgccgga ccttgacata 0 0 85.48 62.58 22.90   chr 41 705110 705033 View Arg CCT cttgcgggta gttttctgct 0 0 86.03 75.12 10.91   chr 42 572502 572390 View Glu CTC acgtatagtc ttaaatttgg 0 0 87.42 75.43 11.99   chr 43 557567 557480 View Leu CAA aatatgtcag attgtcaatt 0 0 78.84 58.40 20.44   chr 44 379395 379252 View Tyr GTA agatctttga ttgtttccag 0 0 84.02 67.98 16.04   chr 45 372012 371935 View Arg TCT tatgtgacaa ttttcctgaa 0 0 86.72 76.66 10.06   chr 46 78659 78547 View Glu TTC aacatgtacc taaacatttt 0 0 85.21 74.22 10.99   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.