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tRNAscan-SE Analysis of Pyrobaculum arsenaticum DSM 13514

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> UCSC Genome Browser >> Genome DB >> Genome Seq

tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 5 704452 704523 View Ala CGC cgtaaagcgg cttctattaa 0 0 83.02 71.62 11.40   chr 21 1707485 1707411 View Ala GGC ggtagagcga tttttcctct 0 0 80.55 69.37 11.18   chr 33 1347059 1346988 View Ala TGC gggtaaagcg cttattacaa 0 0 83.83 72.42 11.41     chr 30 1482289 1482212 View Arg CCG taaaacacag gttttcaacc 0 0 87.46 76.56 10.90   chr 41 705110 705033 View Arg CCT cttgcgggta gttttctgct 0 0 86.03 75.12 10.91   chr 1 78069 78162 View Arg GCG cggggaaaca gcgatccggt 0 0 82.91 72.00 10.91   chr 17 1866633 1866539 View Arg TCG gcattgacac gtatctgtac 0 0 90.14 79.24 10.90   chr 45 372012 371935 View Arg TCT tatgtgacaa ttttcctgaa 0 0 86.72 76.66 10.06     chr 12 1755536 1755610 View Asn GTT gcggtctgta ccttgctttt 0 0 90.12 79.45 10.67     chr 18 1804416 1804300 View Asp GTC agagcatctt acctttttct 0 0 81.03 67.39 13.64     chr 20 1786437 1786342 View Cys GCA aaaattagga tcgataccat 0 0 86.24 76.13 10.11     chr 7 1155444 1155516 View Gln CTG cgtctggccc cttccgaatc 0 0 77.16 60.86 16.30   chr 34 1346043 1345971 View Gln TTG ttgggcggtt cttcttttga 0 0 77.72 61.42 16.30     chr 42 572502 572390 View Glu CTC acgtatagtc ttaaatttgg 0 0 87.42 75.43 11.99   chr 46 78659 78547 View Glu TTC aacatgtacc taaacatttt 0 0 85.21 74.22 10.99     chr 26 1534612 1534537 View Gly CCC taacagccat tagcccgcct 0 0 86.06 75.82 10.24   chr 31 1479953 1479841 View Gly GCC aaacacatga cgccggtctt 0 0 88.24 78.22 10.02   chr 38 895710 895620 View Gly TCC aatgacaata tgtccctcct 895670 895656 78.42 68.18 10.24     chr 37 1045442 1045371 View His GTG gatgcggaga ccttaatttt 0 0 69.29 58.15 11.14     chr 32 1380373 1380299 View Ile GAT ataggcgaac ctgtacaaag 0 0 93.10 82.33 10.77     chr 43 557567 557480 View Leu CAA aatatgtcag attgtcaatt 0 0 78.84 58.40 20.44   chr 16 1877584 1877497 View Leu CAG tatgaaacag cctttaagcc 0 0 73.31 52.88 20.43   chr 35 1155809 1155722 View Leu GAG agtggacttg cctttctaga 0 0 73.23 52.80 20.43   chr 27 1531664 1531580 View Leu TAA ttagaagtag ccttttctct 0 0 78.05 57.39 20.66   chr 8 1351184 1351268 View Leu TAG aaaacaccta tcacctttct 0 0 72.25 51.59 20.66     chr 28 1482655 1482579 View Lys CTT tttccaacca gcttccttct 0 0 90.72 79.36 11.36   chr 22 1695343 1695266 View Lys TTT agtggcagag gtatctcggc 0 0 89.28 77.92 11.36     chr 40 783243 783153 View Met CAT caacgccgga ccttgacata 0 0 85.48 62.58 22.90   chr 13 1877894 1877987 View Met CAT aaggattaca tctttactgc 0 0 86.60 76.62 9.98   chr 2 217834 217934 View Met CAT ctagacacaa ctggctctat 0 0 92.36 81.58 10.78     chr 39 890060 889986 View Phe GAA ctaaaggtag ccttctatct 0 0 88.79 76.79 12.00     chr 14 2023269 2023343 View Pro CGG ggggagtaac ctggcctttt 0 0 79.25 64.55 14.70   chr 6 1155235 1155325 View Pro GGG gaggagcccg ctgaccgtta 1155274 1155289 79.74 69.53 10.21   chr 11 1696536 1696626 View Pro TGG agaagggtag ctttacgtca 1696575 1696590 76.24 61.68 14.56     chr 15 2095913 2095791 View Ser CGA gtaaaaacca ctaaacgttt 2095875 2095841 66.90 45.09 21.80   chr 10 1582747 1582831 View Ser GCT agtggattca cttttccttg 0 0 74.94 51.14 23.80   chr 9 1582574 1582671 View Ser GGA aaagaacaca cctttcttca 1582612 1582624 68.20 47.46 20.74   chr 4 666900 667002 View Ser TGA ctagatacca tcactcttta 666938 666952 67.82 45.59 22.23     chr 19 1797349 1797255 View Thr CGT agaggcgcca ttatcctggc 0 0 89.11 77.55 11.56   chr 36 1141743 1141651 View Thr GGT ttagctccta ttcgtccctc 0 0 88.77 75.13 13.64   chr 24 1693504 1693410 View Thr TGT agaggcgcca ctatacacta 0 0 89.67 78.11 11.56     chr 25 1623365 1623289 View Trp CCA aatcttgcac acttatcttc 0 0 83.88 73.69 10.19     chr 44 379395 379252 View Tyr GTA agatctttga ttgtttccag 0 0 84.02 67.98 16.04     chr 3 650859 650930 View Val CAC agacggtgct cttttgaaaa 0 0 85.94 72.90 13.04   chr 29 1482433 1482342 View Val GAC ctattgtaaa cttctcccaa 0 0 85.50 73.71 11.79   chr 23 1695126 1695029 View Val TAC caaatgtaaa ctcctctttt 1695089 1695065 72.82 61.04 11.78   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.