Genomic tRNA Database: Pyrobaculum arsenaticum DSM 13514

tRNAscan-SE Analysis of Pyrobaculum arsenaticum DSM 13514

>> Main Overview

>> tRNAs by Isotype

>> tRNAs by Locus

>> Secondary Structures

>> tRNA Alignments

>> Run Options/Stats

>> Analysis Notes

>> UCSC Genome Browser

Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTAGTCTAGCGGAA.GGATGCCCGCTTGGCGTGCGGGAG...........AtCCCGGGTTCGAATCCCGGCCGGTCCACCA chr.trna21-AlaGGC Sc: 80.55  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTAGTCTAGCGGAA.GGATGCCCGCCTCGCGCGCGGGAG...........AtCCCGGGTTCGAATCCCGGCCGGTCCA... chr.trna5-AlaCGC Sc: 83.02  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTAGTCTAGCGGAA.GGATGCCCGCCTTGCACGCGGGTG...........AtCCCGGGTTCGAATCCCGGCCGGTCCA... chr.trna33-AlaTGC Sc: 83.83  



Arg tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>..........................................<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCtGGAtGGAGCGGCGGCCTGCGGAGCCGTAG...........GtCGTGGGTTC..................AAGcgtagctgcccacaaat.CCCACCGGGCCCGCCA chr.trna1-ArgGCG Sc: 82.91  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>..........................................<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCtGGAcAGAGCGGCGGCCTCCGGAGCCGTAG...........GtCGTGGGTTC..................GAA.................TCCCACCGGGCCCGCCA chr.trna30-ArgCCG Sc: 87.46  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>..........................................<<<<<<<<<<<<....
GGGCCCGTGGCTCAGCCtGGT.AGAGCGGCGGCCTTCGGAGCCGTAG...........GtCGTGGGTTCacggcgcggccggcccaaAAA.................TCCCACCGGGCCCGCCA chr.trna17-ArgTCG Sc: 90.14  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>..........................................<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCaGGAtAGAGCGGCGGCCTCCTAAGCCGTAG...........GtCGTGGGTTC..................GAA.................TCCCACCGGGCCCGCCA chr.trna41-ArgCCT Sc: 86.03  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>..........................................<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCtGGAtAGAGCGGCGGCCTTCTAAGCCGTAG...........GtCGTGGGTTC..................AAA.................TCCCATCGGGCCCGCCA chr.trna45-ArgTCT Sc: 86.72  



Asn tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCCGTAGCTCAGCCcGGTcAGAGCGGCGGGCTGTTAACCCGTAG...........GtCCCGGGTTCAAATCCCGGCGGCGGCG... chr.trna12-AsnGTT Sc: 90.12  



Asp tRNAs



>>>>>>>..>>............<<....>.>>>..............................................<<<.<...............>>>>>.......<<<<<<<<<<<<....
GCCCCGGTGCCTATTGgGGCcACGGccAGCCGGCCgcTCCAAccggtagtatagcccggactagtatgcgggcctgtcgAGCCCGTG...........ACCCGGGTTCAAATCCCGGCCGGGGCGCCA chr.trna18-AspGTC Sc: 81.03  



Cys tRNAs



>>>>>>>..>>>>.........<<<<....>...............................<...................>>>>>.......<<<<<<<<<<<<....
GCCCCGGTAGCTCAGTCcGGCAGAGTGCGAGAGTTGCAcccggagagcggcgggctgcagACCCGTAG...........GtCCCGGGTTCAAATCCCGGCCGGGGCT... chr.trna20-CysGCA Sc: 86.24  



Gln tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
AGCCCGGTGGTCTAGCGGCcaA.GGATGCGGGGCTCTGGACCCCGTG...........GCCCGGGTTCGAATCCCGGCCGGGCTA... chr.trna7-GlnCTG Sc: 77.16  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
AGCCCGGTGGTCTAGCGGCcaA.GGATGCGGGGCTTTGGACCCCGTG...........GCCCGGGTTCGAATCCCGGCCGGGCTA... chr.trna34-GlnTTG Sc: 77.72  



Glu tRNAs


>>>>>>>.....>>>.............<<<.>.>>>........................................................<<<.<...............>>>>>.......<<<<<..<<<<<<<....
GCCCCGGgcgTAGGGGAGCC.GTG...GCTTGCCGGCCacTCCAAccggtagtctagcccggtcaaggatgcgggcctctcg..........AGCCCGTG...........ACCCGGGTTCAAATCCCGG..CCGGGGCA... chr.trna42-GluCTC Sc: 87.42  

>>>>>>>.....>.>>...........<<.<.>.>>>........................................................<<<.<...............>>>>>.......<<<<<..<<<<<<<....
GCCCCGG.....GCGTAG..GGGA...GC.CGC.GGCC..TGCCGgccgctccaaccggtagtctagcccggtcaaggatgtgggcctttcgAGCCCGTG...........ACCCGGGTTCAAATCCCGG..CCGGGGCA... chr.trna46-GluTTC Sc: 85.21  



Gly tRNAs



>>>>>>>..>>>>............<<<<..>>>..............................................<<<.................>>>>>.......<<<<<<<<<<<<....
GCGGCGGTAGTCTAGCCtGGTttaAGGACCCCGGA..GAAGgatgaagggggccgactagggatggcggcctgccaA..GCCGTTG...........AtCCCGGGTTCAAATCCCGGCCGCCGCACCA chr.trna31-GlyGCC Sc: 88.24  

>>>>>>>..>>>>............<<<<.>>>>>............................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGCGGTAGTCTAGCCtGGTtt.AGGATGGCGGCCTCCCA...................................A..GCCGTTG...........AtCCCGGGTTCGAATCCCGGCCGCCGCA... chr.trna26-GlyCCC Sc: 86.06  

>>>>>>>..>>>>............<<<<.>>>>>............................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGCGGTAGTCTAGCCtGGTtt.AGGATGGCGGCCTTCCAcgcaacggcgaagaa....................A..GCCGTTG...........AtCCCGGGTTCGAATCCCGGCCGCCGCA... chr.trna38-GlyTCC Sc: 78.42  



His tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCCGCCGTAGTCTAGCGGTtA.GGATGGCGGGTTGTGGTCCCGTTG...........ACCCGGGTTCAAATCCCGGCGGCGGCC... chr.trna37-HisGTG Sc: 69.29  



Ile tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTGGCTTAGCCcGGTtAGAGCGCCCGGCTGATAACCGGGAG...........GtCCCGGGTTCAAATCCCGGCGGGCCCA... chr.trna32-IleGAT Sc: 93.10  




Leu tRNAs



>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTGAGGTCCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCACCA chr.trna35-LeuGAG Sc: 73.23  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTCAGGTCCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCACCA chr.trna16-LeuCAG Sc: 73.31  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTTAGGTCCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCA... chr.trna8-LeuTAG Sc: 72.25  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGCcaAAGGGGCAGGGCTCAAGACCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCACCA chr.trna43-LeuCAA Sc: 78.84  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGCTTAAGACCCTGTGGCGTAG....GCCTgCGTGGGTTCGAATCCCAC.CCCCCGCA... chr.trna27-LeuTAA Sc: 78.05  



Lys tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCtGGT.AGAGCGGCGGGCTCTTAACCCGTAG...........GtCGTGGGTTCGAATCCCACCGGGCCCGCCA chr.trna28-LysCTT Sc: 90.72  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCcGGTtAGAGCGGCGGGCTTTTAACCCGTAG...........GtCGTGGGTTCGAATCCCACCGGGCCCGCCA chr.trna22-LysTTT Sc: 89.28  



Met tRNAs


>>>>>>>..>>>>.........<<<<.>>>.>>.................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTTAGCTaGGTAGAGCGCCCtGGGGCCCAgccccgtgccccgcgtaaggctcataACCGGGAG...........GtCCCGGGTTCAAATCCCGGCGGGCCCA... chr.trna2-MetCAT Sc: 92.36  
>>>>>>>..>>>>.........<<<<.>>>..>.................................<.<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCCGTAGCTCAGCCtGGAAGAGCGCTC.TGGGGCGAagccccgcgtacggctcata......ACCGGGTT...........GcCCCGGGTTCAAATCCCGGCGGCGGCA... chr.trna13-MetCAT Sc: 86.60  
>>>>>>>..>>>>.........<<<<.>>>.>>.................................<<<<<................>>>>>.......<<<<<<<<<<<<....
AGCGGGGTAGGCCAGCCtGGTAGGCCGCGG.GGCTCATAacgggcgtgcccgtgca.........GCCCCGAG...........GtCCCCGGTTCAAATCCGGGCCCCGCTA... chr.trna40-MetCAT Sc: 85.48  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGCCGTAGCTCAGCGGGA.GAGCGCCCGGCTGAAGACCGGGCG...........GtCCCGGGTTCAAATCCCGGCGGCCGCACCA chr.trna39-PheGAA Sc: 88.79  



Pro tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCGTAGTCTAGCCtGGCtAGGATGCCGGCCTGGGGacgaaccccgctagaaCGCCGGTG...........AtCCCGGGTTCAAATCCCGGCGGCCCCA... chr.trna6-ProGGG Sc: 79.74  

>>>>>>>..>>>>..........<<<<.>>>>>.......................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCGTAGTCTAGCCtGGCtAGGATGCGCGGTTCGGG................TCCGCGTG...........AcCCCGGGTTCAAATCCCGGCGGCCCCA... chr.trna14-ProCGG Sc: 79.25  

>>>>>>>..>>>>..........<<<<.>>>>>.......................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCGTAGTCTAGCCtGGCtAGGATGCGTGGCTTGGGaccgatggggcaagaaCCCACGTG...........AcCCCGGGTTCAAATCCCGGCGGCCCCA... chr.trna11-ProTGG Sc: 76.24  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>.............<<<.>>>>>..........................................<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGGCCGAGC.GGCccA.AGGCGCGGGACTGGAGacaaaagcgggaa......................ATCCCGTCCCCGTTCa....GGGGgCCCGGGTTCAAATCCCGGCCCCGGCG... chr.trna9-SerGGA Sc: 68.20  

>>>>>>>..>>>.............<<<.>>>>>..........................................<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGGCCGAGC.GGCccA.AGGCGCGGGACCGCCGtagcggcggcgccaaactcgaggcctaggcaagaaATCCCGTCCCCGTCCa....GGGGgCGTGGGTTCAAATCCCACCCCCGGCGCCA chr.trna15-SerCGA Sc: 66.90  

>>>>>>>..>>>.............<<<.>>>>>..........................................<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGGCCGAGC.GGCccA.AGGCGCGGGACTTGAGgcccagaagctggag....................ATCCCGTCCCCGTTCa....GGGGgCGTGGGTTCAAATCCCACCCCCGGCGCCA chr.trna4-SerTGA Sc: 67.82  


>>>>>>>..>>>.............<<<.>>>>>..........................................<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGGCCGAGTTGGTccA.AGGCGCGGGCCTGCTA...................................AGCCCGTCCCCGTTC.....GGGGgCGTGGGTTCAAATCCCACCCCCGGCG... chr.trna10-SerGCT Sc: 74.94  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>...........................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCCGGTAGCTCAGCCtGGT.GGAGCGCCTCACTGGTAacagcctccgagctaccga.CTGAGGAG...........GtCCCGGGTTCAAATCCCGGCCGGGGCT... chr.trna36-ThrGGT Sc: 88.77  

>>>>>>>..>>>>..........<<<<.>>>...............................<<<................>>>>>.......<<<<<<<<<<<<....
GCCCCGGTAGCTCAGCCcGGTcGGAGCGCCCAGGGGCAAagccccgcgaaagcctcgtaAGCGGGAG...........GtCCCGGGTTCGAATCCCGGCCGGGGCT... chr.trna19-ThrCGT Sc: 89.11  

>>>>>>>..>>>>..........<<<<.>>>...............................<<<................>>>>>.......<<<<<<<<<<<<....
GCCCCGGTAGCTCAGCCcGGTcGGAGCGCCCAGGGGCAAagccccgcgaaagccttgtaAGCGGGAG...........GtCCCGGGTTCGAATCCCGGCCGGGGCT... chr.trna24-ThrTGT Sc: 89.67  



Trp tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCaGGCAGAGCGGCGGGCTCCAGACCCGTAG...........GgCGGGGGTTCAAATCCCTCCGGGCCCACCA chr.trna25-TrpCCA Sc: 83.88  



Tyr tRNAs



>>>>>>>>................<<.>.>>...............................................................................<<.<................>>>>>.......<<<<<...<<<<<<....
CGGCCCGCTAAGCCgGGCctcCGCGTGCGCGGCCCGTAgctcagcggtccagagcgcccggctgtagacagcccccgggggtacatctccaaagccccccgggcctgtAGCGGGCG...........GtCCCGGGTTCGAATCCCGG..CGGGCCGA... chr.trna44-TyrGTA Sc: 84.02  



Val tRNAs



>>>>>>>..>>>>.........<<<<.>>>....................................<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGTCTAGCGGT.A.GGATGCCCAGGGGCCAagccccgcgtaagcctgacg.....CGCGGGTG...........AtCCCGGGTTCAAATCCCGGCGGGCCCA... chr.trna29-ValGAC Sc: 85.50  

>>>>>>>..>>>...........<<<.>>>>>................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGTCTAGCGGT.A.TGATGCCCGCCTCACG.........................CGCGGGTG...........GtCCCGGGTTCAAATCCCGGCGGGCCCA... chr.trna3-ValCAC Sc: 85.94  

>>>>>>>..>>>>.........<<<<.>>>>>................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGTCTAGCGGTtA.GGATGCCCGCCTTACAaggcgcacccgcaacagcctaagctCGCGGGTG...........AcCCCGGGTTCGAATCCCGGCGGGCCCA... chr.trna23-ValTAC Sc: 72.82

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.