GtRNAdb

tRNAscan-SE Analysis of Pyrobaculum aerophilum

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Predicted tRNA Secondary Structures


Click on "View tRNA" buttons to view 2-D tRNA structures

Cove-predicted tRNA secondary structures rendered by NAVIEW (c) 1988 Robert E. Bruccoleri


chr.trna45 (1-75)	Length: 75 bp
Type: Ala	Anticodon: CGC at 33-35 (33-35)	Score: 84.63
Seq: GGGCCGGTAGTCTAGCGGAAGGATGCCCGCCTCGCGCGCGGGAGAtCCCGGGTTCGAATCCCGGCCGGTCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna27 (1-72)	Length: 72 bp
Type: Ala	Anticodon: GGC at 33-35 (33-35)	Score: 78.94
Seq: GGGCCGGTAGTCTAGCGGAAGGATGCCCGCTTGGCGTGCGGGAGAtCCCGGGTTCGAATCCCGGCCGGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna11 (1-95)	Length: 95 bp
Type: Ala	Anticodon: TGC at 33-35 (33-35)	Score: 76.68
Possible intron: 37-56 (37-56)
Seq: GGGCCGGTAGTCTAGCGGAAGGATGCCCGCCTTGCAaggcgttacatacctaagagCGCGGGTGAtCCCGGGTTCGAATCCCGGCCGGTCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>...........................<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna17 (1-78)	Length: 78 bp
Type: Arg	Anticodon: CCG at 36-38 (36-38)	Score: 87.46
Seq: GGGCCCGTAGCTCAGCCtGGAcAGAGCGGCGGCCTCCGGAGCCGTAGGtCGTGGGTTCGAATCCCACCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTCAGCCTGGACAGAGCGGCGG[TGGACCCGGCCTTGGTCCGCCGAG]CCTCCGGAGCCGTAGGTCGTGGGTTCGAATCCCACCGGGCCCGCCA
                    
chr.trna35 (1-78)	Length: 78 bp
Type: Arg	Anticodon: CCT at 36-38 (36-38)	Score: 85.39
Seq: GGGCCCGTAGCTCAGTCaGGAtAGAGCGGCGGCCTCCTAAGCCGTAGGtCGTGGGTTCGAATCCCACCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTCAGTCAGGATAGAGCGGCGG[TGGACCCAGCCTCGGTCCGCCGAG]CCTCCTAAGCCGTAGGTCGTGGGTTCGAATCCCACCGGGCCCGCCA
                    
chr.trna43 (1-78)	Length: 78 bp
Type: Arg	Anticodon: GCG at 36-38 (36-38)	Score: 82.91
Seq: GGGCCCGTAGCTCAGCCtGGAtGGAGCGGCGGCCTGCGGAGCCGTAGGtCGTGGGTTCAAATCCCACCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTCAGCCTGGATGGAGCGGCGGCCTGCGGAGCCGTAGGTCGTGGGTTC[AGGCAATGCCGCCCAG]AAATCCCACCGGGCCCGCCA
                    
chr.trna37 (1-77)	Length: 77 bp
Type: Arg	Anticodon: TCG at 35-37 (35-37)	Score: 90.14
Seq: GGGCCCGTGGCTCAGCCtGGTAGAGCGGCGGCCTTCGGAGCCGTAGGtCGTGGGTTCAAATCCCACCGGGCCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna41 (1-78)	Length: 78 bp
Type: Arg	Anticodon: TCT at 36-38 (36-38)	Score: 86.72
Seq: GGGCCCGTAGCTCAGCCtGGAtAGAGCGGCGGCCTTCTAAGCCGTAGGtCGTGGGTTCAAATCCCATCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna25 (1-88)	Length: 88 bp
Type: Asn	Anticodon: GTT at 36-38 (36-38)	Score: 80.86
Possible intron: 40-52 (40-52)
Seq: GCCGCCGTAGCTCAGCCcGGTtAGAGCGGCGGGCTGTTAacctaaggcggacACCCGTAGGtCCCGGGTTCAAATCCCGGCGGCGGCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>....................<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna36 (1-78)	Length: 78 bp
Type: Asp	Anticodon: GTC at 37-39 (37-39)	Score: 81.03
Seq: GCCCCGGTAGTATAGCCcGGActAGTATGCGGGCCTGTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCGCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
BHB: GCC[CCGGCAGGCTGGGGAGCCACGGTACGCCGACCGCTCTAG]CCGGTAGTATAGCCCGGACTAGTATGCGGGCCTGTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCGCCA
                    
chr.trna23 (1-77)	Length: 77 bp
Type: Cys	Anticodon: GCA at 35-37 (35-37)	Score: 87.85
Seq: GCCCCGGTAGCTCAGTCcGGCAGAGCGGCGGGCTGCAGACCCGTAGGtCCCGGGTTCAAATCCCGGCCGGGGCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GCCCCGGTAGCTCAGTCCGGCAGAGCGGCGGGCTGCAGACCCGTAGGTCCCGGGTTCAA[AGGCGGCTTTGCCGCCGAATCG]ATCCCGGCCGGGGCTCCA
                    
chr.trna32 (1-73)	Length: 73 bp
Type: Gln	Anticodon: CTG at 35-37 (35-37)	Score: 74.52
Seq: AGCCCGGTCGTCTAGCGGCcaAGGATGCGGGGCTCTGGACCCCGTGGCCCGGGTTCGAATCCCGGCCGGGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
BHB: AGCCCGGTCGTCTAGCGGCCAA[CGGGAAAACCCGGCTAG]GGATGCGGGGCTCTGGACCCCGTGGCCCGGGTTCGAATCCCGGCCGGGCTA
                    
chr.trna8 (1-76)	Length: 76 bp
Type: Gln	Anticodon: TTG at 35-37 (35-37)	Score: 76.69
Seq: AGCCCGGTCGTCTAGCGGCcaAGGATGCGGGGCTTTGGACCCCGTGGCCCGGGTTCGAATCCCGGCCGGGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna39 (1-75)	Length: 75 bp
Type: Glu	Anticodon: CTC at 37-39 (37-39)	Score: 85.43
Seq: GCCCCGGTAGTCTAGCCcGGAcaAGGATGCGGGCCTCTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
BHB: GCC[CCGGCGTTGTCGCCAGGCAAGACCGGGAGCCGTGGCCAGCCGGCCACTCCAG]CCGGTAGTCTAGCCCGGACAAGGATGCGGGCCTCTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCA
                    
chr.trna2 (1-78)	Length: 78 bp
Type: Glu	Anticodon: TTC at 37-39 (37-39)	Score: 85.05
Seq: GCCCCGGTAGTCTAGCCcGGAcaAGGATGTGGGCCTTTCGAGCCCATGACCCGGGTTCAAATCCCGGCCGGGGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
BHB: GCC[CCGGGAGAGGGGGAGCCGTGGCCAGCCGGCCACTCCAA]CCGGTAGTCTAGCCCGGACAAGGATGTGGGCCTTTCGAGCCCATGACCCGGGTTCAAA[GGCGGAGATCCGCCGTATACA]TCCCGGCCGGGGCACCA
                    
chr.trna26 (1-76)	Length: 76 bp
Type: Gly	Anticodon: CCC at 37-39 (37-39)	Score: 86.06
Seq: GCGGCGGTAGTCTAGCCtGGTttAGGATGGCGGCCTCCCAAGCCGTTGAtCCCGGGTTCGAATCCCGGCCGCCGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna16 (1-79)	Length: 79 bp
Type: Gly	Anticodon: GCC at 37-39 (37-39)	Score: 88.24
Seq: GCGGCGGTAGTCTAGCCtGGTttAGGATGGCGGCCTGCCAAGCCGTTGAtCCCGGGTTCAAATCCCGGCCGCCGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: G[GCAGGCCGCCGCCGCGTTGG]CGGCGGTAGTCTAGCCTGGTTTAGGATGGCGGCCTGCCAAGCCGTTGATCCCGGGTTCAAATCCCGGCCGCCGCACCA
                    
chr.trna13 (1-91)	Length: 91 bp
Type: Gly	Anticodon: TCC at 37-39 (37-39)	Score: 79.39
Possible intron: 41-55 (41-55)
Seq: GCGGCGGTAGTCTAGCCtGGTttAGGATGGCGGCCTTCCAcgcggttgcgaagaaAGCCGTTGAtCCCGGGTTCAAATCCCGGCCGCCGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>......................<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna46 (1-73)	Length: 73 bp
Type: His	Anticodon: GTG at 34-36 (34-36)	Score: 61.47
Seq: GCCGCCGTAGTCTAGCGGTtAGGATGGCGGGTTGTGGTCCCGTACCCGGGTTCAAATCCCGGCGGCGGCCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<..>>>>>.......<<<<<<<<<<<<....
BHB: GCCGCCGTAGTCTAGCGGTTAGGATGGCGGGTTGTGGTCCCGT[TGCGGCGAGCCGCGGGAGG]ACCCGGGTTCAAATCCCGGCGGCGGCCCCA
                    
chr.trna10 (1-75)	Length: 75 bp
Type: Ile	Anticodon: GAT at 36-38 (36-38)	Score: 93.10
Seq: GGGCCCGTGGCTTAGCCcGGTtAGAGCGCCCGGCTGATAACCGGGAGGtCCCGGGTTCAAATCCCGGCGGGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna40 (1-88)	Length: 88 bp
Type: Leu	Anticodon: CAA at 37-39 (37-39)	Score: 78.84
Seq: GCGGGGGTGCCCGAGCCaGGCcaAAGGGGCAGGGCTCAAGACCCTGTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
                    
chr.trna5 (1-88)	Length: 88 bp
Type: Leu	Anticodon: CAG at 37-39 (37-39)	Score: 73.31
Seq: GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTCAGGTCCCTGTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
                    
chr.trna9 (1-88)	Length: 88 bp
Type: Leu	Anticodon: GAG at 37-39 (37-39)	Score: 73.23
Seq: GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTGAGGTCCCTGTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
                    
chr.trna19 (1-88)	Length: 88 bp
Type: Leu	Anticodon: TAA at 37-39 (37-39)	Score: 80.31
Seq: GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGCTTAAGACCCTGTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
                    
chr.trna22 (1-88)	Length: 88 bp
Type: Leu	Anticodon: TAG at 37-39 (37-39)	Score: 73.87
Seq: GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTTAGGTCCCTGTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
                    
chr.trna15 (1-74)	Length: 74 bp
Type: Lys	Anticodon: CTT at 35-37 (35-37)	Score: 89.11
Seq: GGGCCCGTAGCTCAGCCtGGTAGAGCGGCGGGCTCTTAACCCGTAGGtCGTGGGTTCGAATCCCACCGGGCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna28 (1-78)	Length: 78 bp
Type: Lys	Anticodon: TTT at 36-38 (36-38)	Score: 89.28
Seq: GGGCCCGTAGCTCAGCCcGGTtAGAGCGGCGGGCTTTTAACCCGTAGGtCGTGGGTTCGAATCCCACCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna12 (1-74)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (35-37)	Score: 85.48
Seq: AGCGGGGTAGGCCAGCCtGGTAGGCCGCGGGGCTCATAACCCCGAGGtCCCCGGTTCAAATCCGGGCCCCGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: AGCGGGGTAGGCCAGCCTGGTAGGCCGCGGGGCTCATAA[CGGGCGTGCCCGTGGAG]CCCCGAGGTCCCCGGTTCAAATCCGGGCCCCGCTA
                    
chr.trna6 (1-74)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (35-37)	Score: 86.60
Seq: GCCGCCGTAGCTCAGCCtGGAAGAGCGCTCGGCTCATAACCGGGTTGcCCCGGGTTCAAATCCCGGCGGCGGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCCGCCGTAGCTCAGCCTGGAAGAGCGCTC[TGGGGCTAGGCCCCGCGTAG]GGCTCATAACCGGGTTGCCCCGGGTTCAAATCCCGGCGGCGGCA
                    
chr.trna3 (1-74)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (35-37)	Score: 92.75
Seq: GGGCCCGTAGCTTAGCCaGGTAGAGCGCCCGGCTCATAACCGGGCGGtCCCGGGTTCAAATCCCGGCGGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GGGCCCGTAGCTTAGCCAGGTAGAGCGCCC[TGGGGCCCAGCCCCGCGCAA]GGCTCATAACCGGGCGGTCCCGGGTTCAAATCCCGGCGGGCCCA
                    
chr.trna34 (1-75)	Length: 75 bp
Type: Phe	Anticodon: GAA at 33-35 (33-35)	Score: 88.79
Seq: GCGGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACCGGGCGGtCCCGGGTTCAAATCCCGGCGGCCGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna1 (1-74)	Length: 74 bp
Type: Pro	Anticodon: CGG at 35-37 (35-37)	Score: 81.91
Seq: GGGGCCGTAGTCTAGCCtGGTAGGATGCGCGGTTCGGGTCCGCGTGAtCCCGGGTTCAAATCCCGGCGGCCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna14 (1-91)	Length: 91 bp
Type: Pro	Anticodon: GGG at 36-38 (36-38)	Score: 79.72
Possible intron: 40-55 (40-55)
Seq: GGGGCCGTAGTCTAGCCtGGCtAGGATGCCGGCCTGGGGtcggaccccgctagaaCGCCGGTGAtCCCGGGTTCAAATCCCGGCGGCCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......................<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna29 (1-89)	Length: 89 bp
Type: Pro	Anticodon: TGG at 35-37 (35-37)	Score: 78.55
Possible intron: 39-53 (39-53)
Seq: GGGGCCGTAGTCTAGCCtGGTAGGATGCGTGGCTTGGGaccgcgaggcaagagCCCACGTGAtCCCGGGTTCAAATCCCGGCGGCCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>......................<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna44 (1-85)	Length: 85 bp
Type: Ser	Anticodon: CGA at 35-37 (35-37)	Score: 73.27
Seq: GCCGGGGTGGCCGAGCGGCccAAGGCGCGGGACTCGAGATCCCGTCCCCGTCCaGGGGgCGTGGGTTCAAATCCCACCCCCGGCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<.
                    
chr.trna21 (1-85)	Length: 85 bp
Type: Ser	Anticodon: GCT at 36-38 (36-38)	Score: 72.99
Seq: GCCGGGGTGGCCGAGTTGGTccAAGGCGCGGGCCTGCTAAGCCCGTCCCCATACGGGGgCGTGGGTTCAAATCCCACCCCCGGCG
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.
                    
chr.trna20 (1-85)	Length: 85 bp
Type: Ser	Anticodon: GGA at 35-37 (35-37)	Score: 73.96
Seq: GCCGGGGTGGCCGAGCGGCccAAGGCGCGGGACTGGAGATCCCGTCCCCGTCTaGGGGgCCCGGGTTCAAATCCCGGCCCCGGCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<.
                    
chr.trna38 (1-88)	Length: 88 bp
Type: Ser	Anticodon: TGA at 35-37 (35-37)	Score: 75.45
Seq: GCCGGGGTGGCCGAGCGGCccAAGGCGCGGGACTTGAGATCCCGTCCCCGTCCaGGGGgCGTGGGTTCAAATCCCACCCCCGGCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<....
                    
chr.trna24 (1-75)	Length: 75 bp
Type: Thr	Anticodon: CGT at 36-38 (36-38)	Score: 89.11
Seq: GCCCCGGTAGCTCAGCCcGGTcGGAGCGCCCGCCTCGTAAGCGGGAGGtCCCGGGTTCGAATCCCGGCCGGGGCT
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCCCCGGTAGCTCAGCCCGGTCGGAGCGCCC[AGGGGCAAAGCCCCGCGTAA]GCCTCGTAAGCGGGAGGTCCCGGGTTCGAATCCCGGCCGGGGCT
                    
chr.trna33 (1-96)   Length: 96 bp
Type: Thr       Anticodon: GGT at 35-37 (35-37) Score: 80.56
Possible intron: 39-57 (39-57)
Seq: GCCCCGGTAGCTCAGCCtGGTGGAGCGCCTCACTGGTAaaagcctccgggctaccggATGAGGAGGtCCCGGGTTCAAATCCCGGCCGGGGCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>..........................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GCCCCGGTAGCTCAGCCTGGTGGAGCGCCTCACTGGTAAAAGCCTCCGGGCTACCGGATGAGGAGGTCCCGGGTTCA[GGCATTGCCGCCTAAG]AATCCCGGCCGGGGCTCCA
                    
chr.trna7 (1-78)	Length: 78 bp
Type: Thr	Anticodon: TGT at 36-38 (36-38)	Score: 91.28
Seq: GCCCCGGTAGCTCAGCCcGGTcGGAGCGCCCGCCTTGTAAGCGGGAGGtCCCGGGTTCGAATCCCGGCCGGGGCTCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GCCCCGGTAGCTCAGCCCGGTCGGAGCGCCC[AGGGGCAAAGCCCCGTGTAG]GCCTTGTAAGCGGGAGGTCCCGGGTTCGAA[GGCGGCTTTGCCGCCGAAAC]TCCCGGCCGGGGCTCCA
                    
chr.trna18 (1-77)	Length: 77 bp
Type: Trp	Anticodon: CCA at 35-37 (35-37)	Score: 83.40
Seq: GGGGCCGTAGCTCAGCCaGGCAGAGCGGCGGGCTCCAGACCCGTAGGgCGGGGGTTCAAATCCCTCCGGCCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna42 (1-74)	Length: 74 bp
Type: Tyr	Anticodon: GTA at 35-37 (35-37)	Score: 78.96
Seq: CGGGCCGTAGCTCAGCGGTcgAGAGCGCCCGGCTGTAGACCGGGCGGtCCCGGGTTCGAATCCCGGCGGCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: CGGGCCGTAGCTCAGCGGTCGAGAGCGCCCGGCTGTAGAC[AGCCCCCTGGGGGACATTCCCCTAAACCCCCAGGGCCTGTAA]CGGGCGGTCCCGGGTTCGAATCCCGGCGGCCCGA
                    
chr.trna4 (1-72)	Length: 72 bp
Type: Val	Anticodon: CAC at 33-35 (33-35)	Score: 85.94
Seq: GGGCCCGTAGTCTAGCGGTATGATGCCCGCCTCACGCGCGGGTGGtCCCGGGTTCAAATCCCGGCGGGCCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna31 (1-72)	Length: 72 bp
Type: Val	Anticodon: GAC at 33-35 (33-35)	Score: 85.50
Seq: GGGCCCGTAGTCTAGCGGTAGGATGCCCGCCTGACGCGCGGGTGAtCCCGGGTTCAAATCCCGGCGGGCCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GGGCCCGTAGTCTAGCGGTAGGATGCCC[AGGGGCGGAGCCCCGCATTA]GCCTGACGCGCGGGTGATCCCGGGTTCAAATCCCGGCGGGCCCA
                    
chr.trna30 (1-97)	Length: 97 bp
Type: Val	Anticodon: TAC at 33-35 (33-35)	Score: 75.57
Possible intron: 37-61 (37-61)
Seq: GGGCCCGTAGTCTAGCGGTATGATGCCCGCCTTACAtggcgcacccgcaacagcctaagagCGCGGGTGGtCCCGGGTTCGAATCCCGGCGGGCCCA
Str: >>>>>>>..>>>.........<<<.>>>>>................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
         



The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.