>> tRNAscan-SE >> Lowe Lab
[Home] [Find tRNAs] [BLAST] [Download] [Bug/Request] [FAQ] [Citation] [Legend] [Other Links]

tRNAscan-SE Analysis of Pyrobaculum aerophilum

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> UCSC Genome Browser >> Genome DB >> Genome Seq

tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 1 320578 320651 View Pro CGG attaggaaga ttcttaactc 0 0 81.91 67.21 14.70   chr 2 487809 487945 View Glu TTC catggatcac ccatttttct 0 0 85.05 71.35 13.70   chr 3 663679 663772 View Met CAT ctaataacca cttttttcgt 0 0 92.75 81.98 10.77   chr 4 1055185 1055256 View Val CAC aagcagataa cctttccctc 0 0 85.94 72.90 13.04   chr 5 1217578 1217665 View Leu CAG tatattacag ccttttcacc 0 0 73.31 52.88 20.43   chr 6 1218974 1219067 View Met CAT gttgttagta tttttatagt 0 0 86.60 76.62 9.98   chr 7 1239015 1239132 View Thr TGT atagggcgaa ctcaattatt 0 0 91.28 79.95 11.33   chr 8 1416282 1416357 View Gln TTG aaaagaggcg attcatttag 0 0 76.69 60.61 16.08   chr 9 1420272 1420359 View Leu GAG tatcacattg cctctttagg 0 0 73.23 52.80 20.43   chr 10 1423882 1423956 View Ile GAT gtaagtcaca catcaagtat 0 0 93.10 82.33 10.77   chr 11 1424045 1424139 View Ala TGC aaggactacg ctttcctgcc 1424081 1424100 76.68 65.50 11.18   chr 12 1661495 1661585 View Met CAT aaacggccga ccttgacata 0 0 85.48 62.58 22.90   chr 13 1740444 1740534 View Gly TCC cgcactctca tgtccgccct 1740484 1740498 79.39 69.16 10.23   chr 14 1798211 1798301 View Pro GGG tgtggggtga ttttattaaa 1798250 1798265 79.72 69.52 10.20   chr 15 1819457 1819530 View Lys CTT tagctctccg ctacgacgtt 0 0 89.11 77.52 11.59   chr 16 1904021 1904119 View Gly GCC acaagcttac cgtttttctc 0 0 88.24 78.22 10.02   chr 17 1924495 1924596 View Arg CCG ctttaagacg gtctttacgt 0 0 87.46 76.56 10.90   chr 18 1937685 1937761 View Trp CCA aataaacctg cttgtccctc 0 0 83.40 72.75 10.65   chr 19 1959975 1960062 View Leu TAA tataatacag gttttctgac 0 0 80.31 59.87 20.44   chr 20 2007525 2007609 View Ser GGA agaacgcaca cttttctata 0 0 73.96 51.73 22.23   chr 21 2007730 2007814 View Ser GCT gctggcaata cctttttctc 0 0 72.99 49.19 23.80   chr 22 2020794 2020881 View Leu TAG tttaaagcag cctcttcacc 0 0 73.87 53.43 20.44   chr 23 2028602 2028700 View Cys GCA ataaagcgaa ctcaattatc 0 0 87.85 77.97 9.88   chr 24 2039014 2039108 View Thr CGT tatagggcga tttgtccctc 0 0 89.11 77.55 11.56   chr 25 2099023 2099110 View Asn GTT catcaaccca ctggactact 2099062 2099074 80.86 70.19 10.67   chr 26 1960241 1960166 View Gly CCC tctttacaca ttggtctccg 0 0 86.06 75.82 10.24   chr 27 1839080 1839009 View Ala GGC tagctccaca ctatttcttt 0 0 78.94 67.53 11.41   chr 28 1828728 1828651 View Lys TTT tattgaatca gttagctctt 0 0 89.28 77.92 11.36   chr 29 1826483 1826395 View Pro TGG taggactaac tctacgtttt 1826445 1826431 78.55 63.99 14.56   chr 30 1825531 1825435 View Val TAC cgtcactaca tttaatttgt 1825495 1825471 75.57 62.52 13.05   chr 31 1819275 1819184 View Val GAC tagcttttca cctctctcta 0 0 85.50 73.71 11.79   chr 32 1797917 1797828 View Gln CTG ataggcactg cttccgccga 0 0 74.52 58.21 16.31   chr 33 1792192 1792081 View Thr GGT aggcgcggac ttcaattatc 1792137 1792119 80.56 67.15 13.41   chr 34 1735041 1734967 View Phe GAA tttagcattg tcgcttttct 0 0 88.79 76.79 12.00   chr 35 1298281 1298180 View Arg CCT taccgtgaca ccttcgccga 0 0 85.39 74.48 10.91   chr 36 1226120 1226004 View Asp GTC ccagaacctt accctatttt 0 0 81.03 67.39 13.64   chr 37 1196357 1196281 View Arg TCG aataagggga ctatttttta 0 0 90.14 79.24 10.90   chr 38 1025434 1025347 View Ser TGA tttagaaaca tatcctcttt 0 0 75.45 51.72 23.73   chr 39 895505 895379 View Glu CTC tcaattccct tgaaacattt 0 0 85.43 73.44 11.99   chr 40 883422 883335 View Leu CAA gggaaaattg cttcttttag 0 0 78.84 58.40 20.44   chr 41 842404 842327 View Arg TCT tccacccaga taatcctctt 0 0 86.72 76.66 10.06   chr 42 837785 837670 View Tyr GTA atggaaacag ctagtctgcc 0 0 78.96 62.46 16.50   chr 43 486542 486449 View Arg GCG gtgaaaacgg gtcttaccgc 0 0 82.91 72.00 10.91   chr 44 380284 380200 View Ser CGA gtgaaaattt cctttcccct 0 0 73.27 49.32 23.95   chr 45 303676 303602 View Ala CGC tacaactacg gccccttcta 0 0 84.63 73.46 11.17   chr 46 21867 21776 View His GTG cctctgggta cgtctttacg 0 0 61.47 49.34 12.13   Note: Only introns located between position 37 and 38 are listed in the table above.

---

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.