Genomic tRNA Database: Pyrobaculum aerophilum

tRNAscan-SE Analysis of Pyrobaculum aerophilum

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>> tRNAs by Isotype

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>> Secondary Structures

>> tRNA Alignments

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>> UCSC Genome Browser

Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs


>>>>>>>..>>>>........<<<<.>>>>>...........................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTAGTCTAGCGGAA.GGATGCCCGCTTGGCG....................TGCGGGAG...........AtCCCGGGTTCGAATCCCGGCCGGTCCA... Pyrobaculum_aerophilum_chr.trna27-AlaGGC Sc: 78.94  
>>>>>>>..>>>>........<<<<.>>>>>...........................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTAGTCTAGCGGAA.GGATGCCCGCCTCGCG....................CGCGGGAG...........AtCCCGGGTTCGAATCCCGGCCGGTCCACCA Pyrobaculum_aerophilum_chr.trna45-AlaCGC Sc: 84.63  
>>>>>>>..>>>>........<<<<.>>>>>...........................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTAGTCTAGCGGAA.GGATGCCCGCCTTGCAaggcgttacatacctaagagCGCGGGTG...........AtCCCGGGTTCGAATCCCGGCCGGTCCACCA Pyrobaculum_aerophilum_chr.trna11-AlaTGC Sc: 76.68  


Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>....................................<<<<<................>>>>>.......................<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCtGGAtGGAGCGGCGGCCTGCGG...........................A..GCCGTAG...........GtCGTGGGTTCAggcAATgccgcccagaaatCCCACCGGGCCCGCCA Pyrobaculum_aerophilum_chr.trna43-ArgGCG Sc: 82.91  
>>>>>>>..>>>>..........<<<<.>>>>......................................<<<<................>>>>>.......................<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCtGGAcAGAGCGGCGG...TGGAcccggccttggtccgccgagcctccggA..GCCGTAG...........GtCGTGGGTTCG...AAT.............CCCACCGGGCCCGCCA Pyrobaculum_aerophilum_chr.trna17-ArgCCG Sc: 87.46  
>>>>>>>..>>>>..........<<<<.>>>>>....................................<<<<<................>>>>>.......................<<<<<<<<<<<<....
GGGCCCGTGGCTCAGCCtGGT.AGAGCGGCGGCCTTCGG...........................A..GCCGTAG...........GtCGTGGGTTCA...AAT.............CCCACCGGGCCCGCCA Pyrobaculum_aerophilum_chr.trna37-ArgTCG Sc: 90.14  
>>>>>>>..>>>>..........<<<<.>>>>......................................<<<<................>>>>>.......................<<<<<<<<<<<<....
GGGCCCGTAGCTCAGTCaGGAtAGAGCGGCGG...TGGAcccagcctcggtccgccgagcctcctaA..GCCGTAG...........GtCGTGGGTTCG...AAT.............CCCACCGGGCCCGCCA Pyrobaculum_aerophilum_chr.trna35-ArgCCT Sc: 85.39  
>>>>>>>..>>>>..........<<<<.>>>>>....................................<<<<<................>>>>>.......................<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCtGGAtAGAGCGGCGGCCTTCTA...........................A..GCCGTAG...........GtCGTGGGTTCA...AAT.............CCCATCGGGCCCGCCA Pyrobaculum_aerophilum_chr.trna41-ArgTCT Sc: 86.72  


Asn tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>....................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCCGTAGCTCAGCCcGGTtAGAGCGGCGGGCTGTTAacctaaggcggacACCCGTAG...........GtCCCGGGTTCAAATCCCGGCGGCGGCG... Pyrobaculum_aerophilum_chr.trna25-AsnGTT Sc: 80.86  


Asp tRNAs


>>>>>>>..>>>..........<<<.>>>.........................................................<<<...............>>>>>.......<<<<<<<<<<<<....
GCCCCGGCAGGCTgGGGA....GCCACGGTACGCCGAccgctctagccggtagtatagcccggactagtatgcgggcctgtcgAGCCCGTG...........ACCCGGGTTCAAATCCCGGCCGGGGCGCCA Pyrobaculum_aerophilum_chr.trna36-AspGTC Sc: 81.03  


Cys tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>..............................<<<<<<<<<<<<....
GCCCCGGTAGCTCAGTCcGGCAGAGCGGCGGGCTGCAGACCCGTAG...........GtCCCGGGTTCAAAggcggctttgccgccgaatcgat.CCCGGCCGGGGCTCCA Pyrobaculum_aerophilum_chr.trna23-CysGCA Sc: 87.85  


Gln tRNAs


>>>>>>>..>>>>............................<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
AGCCCGGTCGTCTAGCGGCc.Aacgggaaaacccggctag.GGATGCGGGGCTCTGGACCCCGTG...........GCCCGGGTTCGAATCCCGGCCGGGCTA... Pyrobaculum_aerophilum_chr.trna32-GlnCTG Sc: 74.52  
>>>>>>>..>>>>............................<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
AGCCCGGTCGTCTAGCGGCcaA...................GGATGCGGGGCTTTGGACCCCGTG...........GCCCGGGTTCGAATCCCGGCCGGGCTACCA Pyrobaculum_aerophilum_chr.trna8-GlnTTG Sc: 76.69  


Glu tRNAs


>>>>>>>.....>...........<.....>.>>............................................................<<.<................>>>>>.............................<<<<<<<<<<<<....
GCCCCGGCGTTGTCGCCaGGCaA.GACCGGGAGCCGTGGCcagccggccactccagccggtagtctagcccggacaaggatgcgggcctctcgAGCCCGTG...........ACCCGGGTTCAAA......................TCCCGGCCGGGGCA... Pyrobaculum_aerophilum_chr.trna39-GluCTC Sc: 85.43  
>>>>>>>..>.................<.>.>>>............................................................<<<.<...............>>>>>.............................<<<<<<<<<<<<....
GCCCCGGGAG...AGG..GGG.A.GC.CGT.GGCCAGCCGgccactccaaccggtagtctagcccggacaaggatgtgggcctttcg......AGCCCATG...........ACCCGGGTTCAAAggcggagatccgccgtatacat.CCCGGCCGGGGCACCA Pyrobaculum_aerophilum_chr.trna2-GluTTC Sc: 85.05  


Gly tRNAs


....................>>>>>>>..>>>>...........<<<<.>>>>>......................<<<<<................>>>>>.......<<<<<<<<<<<<....
ggcaggccgccgccgcgttgGCGGCGGTAGTCTAGCCtGGTttAGGATGGCGGCCTGCCA...............AGCCGTTG...........AtCCCGGGTTCAAATCCCGGCCGCCGCACCA Pyrobaculum_aerophilum_chr.trna16-GlyGCC Sc: 88.24  
....................>>>>>>>..>>>>...........<<<<.>>>>>......................<<<<<................>>>>>.......<<<<<<<<<<<<....
....................GCGGCGGTAGTCTAGCCtGGTttAGGATGGCGGCCTCCCA...............AGCCGTTG...........AtCCCGGGTTCGAATCCCGGCCGCCGCA... Pyrobaculum_aerophilum_chr.trna26-GlyCCC Sc: 86.06  
....................>>>>>>>..>>>>...........<<<<.>>>>>......................<<<<<................>>>>>.......<<<<<<<<<<<<....
....................GCGGCGGTAGTCTAGCCtGGTttAGGATGGCGGCCTTCCAcgcggttgcgaagaaAGCCGTTG...........AtCCCGGGTTCAAATCCCGGCCGCCGCA... Pyrobaculum_aerophilum_chr.trna13-GlyTCC Sc: 79.39  


His tRNAs


>>>>>>>..>>>>.........<<<<.>>>>......................<<<<...............>>>>>.......<<<<<<<<<<<<....
GCCGCCGTAGTCTAGCGGTtA.GGATGGCGGGTTGTGGtcccgttgcggcgAGCCGCGGGAGG.......ACCCGGGTTCAAATCCCGGCGGCGGCCCCA Pyrobaculum_aerophilum_chr.trna46-HisGTG Sc: 61.47  


Ile tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTGGCTTAGCCcGGTtAGAGCGCCCGGCTGATAACCGGGAG...........GtCCCGGGTTCAAATCCCGGCGGGCCCA... Pyrobaculum_aerophilum_chr.trna10-IleGAT Sc: 93.10  


Leu tRNAs


>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTGAGGTCCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCACCA Pyrobaculum_aerophilum_chr.trna9-LeuGAG Sc: 73.23  
>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTCAGGTCCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCACCA Pyrobaculum_aerophilum_chr.trna5-LeuCAG Sc: 73.31  
>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGTTTAGGTCCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCACCA Pyrobaculum_aerophilum_chr.trna22-LeuTAG Sc: 73.87  
>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGCcaAAGGGGCAGGGCTCAAGACCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCACCA Pyrobaculum_aerophilum_chr.trna40-LeuCAA Sc: 78.84  
>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGTcaAAGGGGCAGGGCTTAAGACCCTGTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCACCA Pyrobaculum_aerophilum_chr.trna19-LeuTAA Sc: 80.31  


Lys tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCtGGT.AGAGCGGCGGGCTCTTAACCCGTAG...........GtCGTGGGTTCGAATCCCACCGGGCCCG... Pyrobaculum_aerophilum_chr.trna15-LysCTT Sc: 89.11  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCcGGTtAGAGCGGCGGGCTTTTAACCCGTAG...........GtCGTGGGTTCGAATCCCACCGGGCCCGCCA Pyrobaculum_aerophilum_chr.trna28-LysTTT Sc: 89.28  


Met tRNAs


>>>>>>>..>>>>.........<<<<.>>>.>>...........................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTTAGCCaGGTAGAGCGCCCtGGGGCCCAgccccgcgcaaggctcata.ACCGGGCG...........GtCCCGGGTTCAAATCCCGGCGGGCCCA... Pyrobaculum_aerophilum_chr.trna3-MetCAT Sc: 92.75  
>>>>>>>..>>>>.........<<<<.>>>..>...........................<.<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCCGTAGCTCAGCCtGGAAGAGCGCTC.TGGGGCTAggccccgcgtagggctcataACCGGGTT...........GcCCCGGGTTCAAATCCCGGCGGCGGCA... Pyrobaculum_aerophilum_chr.trna6-MetCAT Sc: 86.60  
>>>>>>>..>>>>.........<<<<.>>>.>>...........................<<<<<................>>>>>.......<<<<<<<<<<<<....
AGCGGGGTAGGCCAGCCtGGTAGGCCGCGG.GGCTCATAacgggcgtgcccgtgga...GCCCCGAG...........GtCCCCGGTTCAAATCCGGGCCCCGCTA... Pyrobaculum_aerophilum_chr.trna12-MetCAT Sc: 85.48  


Phe tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGCCGTAGCTCAGCGGGA.GAGCGCCCGGCTGAAGACCGGGCG...........GtCCCGGGTTCAAATCCCGGCGGCCGCACCA Pyrobaculum_aerophilum_chr.trna34-PheGAA Sc: 88.79  


Pro tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCGTAGTCTAGCCtGGCtAGGATGCCGGCCTGGGGtcggaccccgctagaaCGCCGGTG...........AtCCCGGGTTCAAATCCCGGCGGCCCCA... Pyrobaculum_aerophilum_chr.trna14-ProGGG Sc: 79.72  
>>>>>>>..>>>>..........<<<<.>>>>>.......................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCGTAGTCTAGCCtGGT.AGGATGCGCGGTTCGGG................TCCGCGTG...........AtCCCGGGTTCAAATCCCGGCGGCCCCA... Pyrobaculum_aerophilum_chr.trna1-ProCGG Sc: 81.91  
>>>>>>>..>>>>..........<<<<.>>>>>.......................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCGTAGTCTAGCCtGGT.AGGATGCGTGGCTTGGGaccgcgaggcaagag.CCCACGTG...........AtCCCGGGTTCAAATCCCGGCGGCCCCA... Pyrobaculum_aerophilum_chr.trna29-ProTGG Sc: 78.55  


SeC tRNAs




Ser tRNAs


>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGGCCGAGC.GGCccA.AGGCGCGGGACTGGAGATCCCGTCCCCGTCTa....GGGGgCCCGGGTTCAAATCCCGGCCCCGGCG... Pyrobaculum_aerophilum_chr.trna20-SerGGA Sc: 73.96  
>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGGCCGAGC.GGCccA.AGGCGCGGGACTCGAGATCCCGTCCCCGTCCa....GGGGgCGTGGGTTCAAATCCCACCCCCGGCG... Pyrobaculum_aerophilum_chr.trna44-SerCGA Sc: 73.27  
>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGGCCGAGC.GGCccA.AGGCGCGGGACTTGAGATCCCGTCCCCGTCCa....GGGGgCGTGGGTTCAAATCCCACCCCCGGCGCCA Pyrobaculum_aerophilum_chr.trna38-SerTGA Sc: 75.45  
>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGGCCGAGTTGGTccA.AGGCGCGGGCCTGCTAAGCCCGTCCCCATAC.....GGGGgCGTGGGTTCAAATCCCACCCCCGGCG... Pyrobaculum_aerophilum_chr.trna21-SerGCT Sc: 72.99  


Sup tRNAs




Thr tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>...........................<<<<<................>>>>>............................................<<<<<<<<<<<<....
GCCCCGGTAGCTCAGCCtGGT.GGAGCGCCTCACTGGTAaaagcctccgggctaccgg.ATGAGGAG...........GtCCCGGGTTCAggcattgccgcctaagAA.....................TCCCGGCCGGGGCTCCA Pyrobaculum_aerophilum_chr.trna33-ThrGGT Sc: 80.56  
>>>>>>>..>>>>..........<<<<.>>>...............................<<<................>>>>>............................................<<<<<<<<<<<<....
GCCCCGGTAGCTCAGCCcGGTcGGAGCGCCCAGGGGCAAagccccgcgtaagcctcgtaAGCGGGAG...........GtCCCGGGTTCG................AA.....................TCCCGGCCGGGGCT... Pyrobaculum_aerophilum_chr.trna24-ThrCGT Sc: 89.11  
>>>>>>>..>>>>..........<<<<.>>>...............................<<<................>>>>>............................................<<<<<<<<<<<<....
GCCCCGGTAGCTCAGCCcGGTcGGAGCGCCCAGGGGCAAagccccgtgtaggccttgtaAGCGGGAG...........GtCCCGGGTTCG................AAggcggctttgccgccgaaact.CCCGGCCGGGGCTCCA Pyrobaculum_aerophilum_chr.trna7-ThrTGT Sc: 91.28  


Trp tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCGTAGCTCAGCCaGGCAGAGCGGCGGGCTCCAGACCCGTAG...........GgCGGGGGTTCAAATCCCTCCGGCCCCACCA Pyrobaculum_aerophilum_chr.trna18-TrpCCA Sc: 83.40  


Tyr tRNAs


>>>>>>>..>>>>..........<<<<.>>>>...................................................<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGCCGTAGCTCAGCGGTcgA.GAGCGCCCGGCTGTAGacagccccctgggggacattcccctaaacccccagggcctgtAACGGGCG...........GtCCCGGGTTCGAATCCCGGCGGCCCGA... Pyrobaculum_aerophilum_chr.trna42-TyrGTA Sc: 78.96  


Val tRNAs


>>>>>>>..>>>>........<<<<.>>>......................................<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGTCTAGCGGTA.GGATGCCCA...GGGGcggagccccgcattagcctgacg..C..GCGGGTG...........AtCCCGGGTTCAAATCCCGGCGGGCCCA... Pyrobaculum_aerophilum_chr.trna31-ValGAC Sc: 85.50  
>>>>>>>..>>>..........<<<.>>>>>..................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGTCTAGCGGTA.TGATGCCCGCCTCACG.........................C..GCGGGTG...........GtCCCGGGTTCAAATCCCGGCGGGCCCA... Pyrobaculum_aerophilum_chr.trna4-ValCAC Sc: 85.94  
>>>>>>>..>>>..........<<<.>>>>>..................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGTCTAGCGGTA.TGATGCCCGCCTTACAtggcgcacccgcaacagcctaagagC..GCGGGTG...........GtCCCGGGTTCGAATCCCGGCGGGCCCA... Pyrobaculum_aerophilum_chr.trna30-ValTAC Sc: 75.57

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.