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tRNAscan-SE Analysis of Pan troglodytes (chimp) (Mar 2006)

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr6 95 59540014 59539942 View Ala AGC agtgtagtgt gcttctttta 0 0 51.12 34.48 16.64 Both chr6 25 27252907 27252979 View Ala AGC agcatagtgt gtttctttta 0 0 52.54 34.91 17.63 Both chr6 18 27172855 27172927 View Ala AGC tccctgatat agctttatta 0 0 54.12 32.96 21.16 Both chr6 91 59585099 59585027 View Ala AGC ccctgatgtg aactttatta 0 0 54.53 29.88 24.65 Both chr6 94 59562157 59562085 View Ala AGC cccctgacgt agctttatta 0 0 55.01 30.36 24.65 Both chr6 108 29325642 29325571 View Ala AGC gtttcccaga ggttttgttt 0 0 55.27 43.92 11.35 Both chrUn 12 19263645 19263573 View Ala AGC tccctgatat agctttatta 0 0 57.89 37.78 20.11 Both chr6 96 59539302 59539230 View Ala AGC tctctccttt atttcttgtc 0 0 58.62 35.50 23.12 Both chr6 90 59594171 59594099 View Ala AGC tccctgatat agctttatta 0 0 60.72 36.06 24.66 Both chrUn 3 48417622 48417694 View Ala AGC tccctgatat agctttatta 0 0 60.72 36.06 24.66 Both chr6 22 27204871 27204943 View Ala AGC cccctgacgt ggctttatta 0 0 61.81 37.15 24.66 Both chr6 19 27181970 27182042 View Ala AGC ccctgatgtg aactttatta 0 0 62.45 37.80 24.65 Both chr6 20 27186731 27186803 View Ala AGC cccctgacgt agctttatta 0 0 62.45 37.80 24.65 Both chr6 92 59580350 59580278 View Ala AGC cccctgatgt agctttatta 0 0 62.45 37.80 24.65 Both chrUn 4 52156187 52156259 View Ala AGC ccctgatgtg aactttatta 0 0 62.45 37.80 24.65 Both chr6 167 27070106 27070034 View Ala AGC tttcccggaa gttttatgtg 0 0 63.06 39.95 23.11 Both chr6 24 27229944 27230016 View Ala AGC tatcctcaat gttccttgtc 0 0 63.36 40.25 23.11 Both chr2a 3 27641026 27641098 View Ala AGC agtggcagac ctcagctttt 0 0 63.68 41.02 22.66 Both chr8 5 64368481 64368553 View Ala AGC gcccagccgt gttttctttc 0 0 63.68 41.02 22.66 Both chr6 26 27253619 27253691 View Ala AGC tttctccttt atttcttgtc 0 0 65.49 42.38 23.11 Both chr6 69 29238300 29238371 View Ala AGC ccatcgcaat gtagttgata 0 0 66.18 51.90 14.28 Both chr14 9 89079826 89079898 View Ala AGC aggatcacat taccatttga 0 0 66.36 41.87 24.49 Both chr6 117 29254038 29253967 View Ala AGC cattgtaagt caagtacatt 0 0 74.57 53.05 21.52 Both chr6 68 29226185 29226256 View Ala AGC ccagctttca tgtattttgc 0 0 75.68 50.52 25.16 Both chr6 122 29171946 29171875 View Ala AGC ttttcgaggt gtgtttttgt 0 0 75.78 57.59 18.19 Both chr6 66 29119990 29120061 View Ala AGC ctctgtggtt ccagttttgg 0 0 76.69 53.05 23.64 Both chr6 111 29309499 29309428 View Ala AGC tgagtccgga cgccatgttt 0 0 77.02 51.49 25.53 Both chr6 102 29381169 29381098 View Ala AGC ttaaacgttg gcctcctttt 0 0 77.18 53.38 23.80 Both chr6 103 29354398 29354327 View Ala AGC gtttcagcac tttcttttgc 0 0 77.18 53.38 23.80 Both chr6 71 29247861 29247932 View Ala CGC gcttcggtca gttgtccatt 0 0 70.09 49.55 20.54 Both chr6 119 29211595 29211524 View Ala CGC ttgcgggtca tttttccttc 0 0 72.31 50.84 21.47 Both chr2b 5 160995446 160995517 View Ala CGC ttttcggctg aatcagccaa 0 0 73.12 53.51 19.61 Both chr6 121 29189508 29189437 View Ala CGC acttgtgcca aggcgattac 0 0 74.81 51.23 23.58 Both chr6 10 27050949 27051020 View Ala CGC tcttagggta agttattttg 0 0 78.91 55.32 23.59 Both chr11 2 50230638 50230709 View Ala TGC cttttaggaa agtgatggtt 0 0 57.05 42.97 14.08 Both chr6 115 29277584 29277513 View Ala TGC ctttcaggag aatggtggtt 0 0 60.23 52.48 7.75 Both chr12 11 126835222 126835151 View Ala TGC gaaaagggag ttgtagtttt 0 0 70.15 49.55 20.60 Both chr6 107 29330808 29330737 View Ala TGC cttatagtaa agcgacggtt 0 0 70.95 44.60 26.35 Both chr6 110 29316343 29316272 View Ala TGC cttatagtaa agtgatggtt 0 0 70.95 44.60 26.35 Both chr12 6 126854913 126854984 View Ala TGC gcaagagtaa gacttttccg 0 0 72.71 49.12 23.59 Both chr6 113 29303345 29303274 View Ala TGC tgttcaggaa aacggtgttt 0 0 73.35 50.22 23.13 Both chr5 9 183702516 183702587 View Ala TGC aagagcaggt gtgtcgtttt 0 0 74.45 50.86 23.59 Both chr6 67 29157089 29157160 View Ala TGC gtctatgtgt ataggtatta 0 0 78.55 54.96 23.59 Both   chr3 10 46725061 46724989 View Arg ACG taccaactcg cgatgtctgt 0 0 68.07 51.18 16.89 Both chr6 140 28183580 28183508 View Arg ACG ttagaggcaa cttgtgctct 0 0 68.07 51.18 16.89 Both chr6 158 27713637 27713565 View Arg ACG caacggtgat gaggcttact 0 0 68.07 51.18 16.89 Both chr6 35 27714903 27714975 View Arg ACG gcgcaaccga ggtgtttatt 0 0 68.07 51.18 16.89 Both chr14 7 21870200 21870272 View Arg ACG tgctatctcg gtggggcttc 0 0 72.37 52.49 19.88 Both chr6 6 26823835 26823907 View Arg ACG gttcatcgga cttagttttg 0 0 72.37 52.49 19.88 Both chr6 8 27037205 27037277 View Arg ACG ggaacgcgta gtataagtag 0 0 72.37 52.49 19.88 Both chr17 27 67257687 67257615 View Arg CCG atcctgtggt cgtgagatta 0 0 65.49 49.24 16.25 Both chr16 1 3272499 3272571 View Arg CCG ggaaccgtac ttgctatgtt 0 0 69.88 52.79 17.09 Both chr6 116 29262205 29262133 View Arg CCG acccgcgtgc tgttcttact 0 0 69.88 52.79 17.09 Both chr6 74 29398974 29399046 View Arg CCG ttcggcggtt tcattttgcg 0 0 69.88 52.79 17.09 Both chr7 4 139966588 139966660 View Arg CCT gtttgcagaa gcctgagact 0 0 67.28 54.18 13.10 Both chr16 13 3319259 3319331 View Arg CCT cgtggtaact agacaacacc 0 0 67.77 56.09 11.68 Both chr16 2 3274704 3274776 View Arg CCT tttgctatcc aagaaaggct 0 0 71.53 57.48 14.05 Both chr17 25 74600174 74600102 View Arg CCT gtcttaccgc nnnnnnnnnn 0 0 73.41 55.84 17.57 Both chr16 12 3318110 3318182 View Arg CCT cgtggtaact agacaacacc 0 0 73.88 56.31 17.57 Both chr17 22 74599211 74599283 View Arg CCT ccggccccaa gaggtgaaag 0 0 73.88 56.31 17.57 Both chr15 1 42375257 42375328 View Arg GCG ccggtagctc ttgtggaaac 0 0 58.56 36.72 21.84 Both chr6 126 29055496 29055424 View Arg TCG taagccatgg actctccctt 0 0 69.08 49.20 19.88 Both chr6 3 26794820 26794892 View Arg TCG acctgcgagg agtggtgttc 0 0 69.55 49.67 19.88 Both chr17 23 74600784 74600856 View Arg TCG tacagcagga gaacgtttta 0 0 70.52 51.50 19.02 Both chr9 3 109640907 109640979 View Arg TCG ccaaccggct tggaggggtt 0 0 70.72 56.73 13.99 Both chr6 4 26818402 26818474 View Arg TCG tgtaaccggg tttgagatac 0 0 72.33 51.13 21.20 Both chr15 6 87068545 87068617 View Arg TCG acaaccgact cagggaggtt 0 0 76.93 58.34 18.59 Both chr1 41 138407586 138407513 View Arg TCT gtgtggtgag gtcacctggc 0 0 76.29 56.97 19.32 Both chr9 4 128169806 128169716 View Arg TCT ttccgcagcc aattttgatg 128169769 128169752 67.17 46.72 20.45 Both chr6 53 28071726 28071812 View Arg TCT agctcaagca catgttgtat 28071763 28071776 71.35 52.27 19.08 Both chr17 31 48392956 48392870 View Arg TCT ctcaccgggt attttatttc 48392919 48392906 71.15 50.70 20.45 Both chr11 3 57762271 57762356 View Arg TCT gcacgtgtct ctttttgttt 57762308 57762320 71.13 50.68 20.45 Both chr1 1 95333295 95333379 View Arg TCT tccaacaggt taacgctttt 95333332 95333343 71.18 52.88 18.30 Both   chr1_random 1 5424099 5424172 View Asn ATT actagtacct cctgttctag 0 0 58.11 42.73 15.38 Eufind chr1 44 128758187 128758114 View Asn GTT gttcagccat tcgctgatct 0 0 53.83 43.78 10.05 Both chr1_random 10 6263923 6263996 View Asn GTT gcccacgccc aaagtcccgt 0 0 54.73 43.52 11.21 Both chrUn 6 53391907 53391833 View Asn GTT aattgacgtt tgattttaaa 0 0 55.34 47.95 7.39 Eufind chr1_random 27 6487403 6487330 View Asn GTT aattgacgtt tgattttaaa 0 0 57.40 43.39 14.01 Both chr1_random 35 6385937 6385864 View Asn GTT aattgacgtt tgattttaaa 0 0 57.40 43.39 14.01 Both chr1_random 31 6425680 6425607 View Asn GTT aatcggcgtt tgattttaaa 0 0 64.62 50.62 14.00 Both chr1_random 15 6558695 6558768 View Asn GTT aattgacgtt tgattttaaa 0 0 65.58 57.36 8.22 Eufind chr1_random 60 5233196 5233123 View Asn GTT gatagtacct cttgttcgag 0 0 70.03 51.13 18.90 Both chr1_random 50 5483745 5483672 View Asn GTT nntagttctt cttgctctag 0 0 70.98 54.75 16.23 Both chr1_random 43 5893142 5893069 View Asn GTT agcagtgctt cttattggaa 0 0 72.35 55.00 17.35 Both chr1_random 40 6030505 6030432 View Asn GTT gatagttcct cttgttcgag 0 0 74.12 58.64 15.48 Both chr1_random 21 6647651 6647724 View Asn GTT agaagcgctt cttattggac 0 0 74.81 55.45 19.36 Both chr1_random 41 6001958 6001885 View Asn GTT gatagtacct cttgttcgag 0 0 75.91 52.80 23.11 Both chr1 56 128455564 128455491 View Asn GTT aattgaggtt tgatttttaa 0 0 76.20 55.91 20.29 Both chr1_random 49 5532039 5531966 View Asn GTT agtagttctt cttgctctag 0 0 77.02 56.16 20.86 Both chr1 63 111531368 111531295 View Asn GTT gatagtacct cttgttcgag 0 0 78.30 55.19 23.11 Both chr1 50 128660091 128660018 View Asn GTT ggcagtgctt ctgattgcaa 0 0 79.33 56.07 23.26 Both chr1 38 140721444 140721371 View Asn GTT attcgtgtta gctgaaattt 0 0 82.24 58.97 23.27 Both chr10 7 22773934 22773861 View Asn GTT tgacacggga cgctctccct 0 0 82.24 58.97 23.27 Both chr13 5 30401281 30401208 View Asn GTT gagtaactgg gtcagcgctt 0 0 82.24 58.97 23.27 Both chr17 9 18812697 18812770 View Asn GTT ggtcgactcg ctatgacttt 0 0 82.24 58.97 23.27 Both chr19 1 1352921 1352994 View Asn GTT gcgcagtgtc cgtggtgact 0 0 82.24 58.97 23.27 Both chr1_random 22 6658476 6658549 View Asn GTT agaagcgctt cttattggac 0 0 82.24 58.97 23.27 Both chrUn 1 13692954 13693027 View Asn GTT agaagcgctt cttagtggac 0 0 82.24 58.97 23.27 Both chr1 2 111296155 111296228 View Asn GTT gacagtacct cttgttcaag 0 0 82.89 59.62 23.27 Both chr1_random 42 5986742 5986669 View Asn GTT gacagtacct cttgttcaag 0 0 82.89 59.62 23.27 Both chrUn 11 31288339 31288266 View Asn GTT gacagtacct cttgttcaag 0 0 82.89 59.62 23.27 Both chrUn 8 51341744 51341671 View Asn GTT agcagtgctt cttattggaa 0 0 82.89 59.62 23.27 Both chr1_random 36 6364477 6364404 View Asn GTT agaagcgctt cttattggac 0 0 83.62 60.36 23.26 Both chr1 17 140824019 140824092 View Asn GTT gccaacgccc gaagtcgcat 0 0 83.66 60.39 23.27 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr1 16 140815883 140815954 View Asp GTC ctcacggtcg attacagttg 0 0 45.02 30.71 14.31 Both chr3 5 190190216 190190146 View Asp GTC ggataggaag gctgttgatg 0 0 45.34 25.90 19.44 Both chr1_random 9 6253939 6254010 View Asp GTC tttccggttg attacagttg 0 0 50.76 31.97 18.79 Both chr1 33 140746387 140746316 View Asp GTC gtcgccgtcg gcagccgtgc 0 0 72.92 48.38 24.54 Both chr1 34 140743123 140743052 View Asp GTC gtcgccgtcg gcagccgtgc 0 0 72.92 48.38 24.54 Both chr12 10 126840822 126840751 View Asp GTC ttacgggcgg gccacgtatg 0 0 72.92 48.38 24.54 Both chr12 2 97043375 97043446 View Asp GTC tttgtgcagt gcataataat 0 0 72.92 48.38 24.54 Both chr12 8 126854665 126854594 View Asp GTC atatggctcg gccaagtatc 0 0 72.92 48.38 24.54 Both chr17 16 48285662 48285733 View Asp GTC cacaggtccc agtactacta 0 0 72.92 48.38 24.54 Both chr6 146 28094145 28094074 View Asp GTC ttttaagtcc acgaagcagt 0 0 72.92 48.38 24.54 Both chr6 45 27985120 27985191 View Asp GTC ttacgtcaat gaggcttaag 0 0 72.92 48.38 24.54 Both chr12 3 99553197 99553268 View Asp GTC ttctaacagc ataaatgtct 0 0 74.76 50.21 24.55 Both chr6 49 28011780 28011851 View Asp GTC gccgagttct aaaagttgct 0 0 74.81 50.27 24.54 Both   chr15 4 77679231 77679303 View Cys ACA aacaggtgaa tccggaaact 0 0 50.20 31.13 19.07 Both chr7 19 150064230 150064159 View Cys GCA cctcaggcaa attcccaagt 0 0 51.39 42.71 8.68 Both chr17 8 18729018 18729089 View Cys GCA tacaggtaga tctgtggtgt 0 0 57.76 44.95 12.81 Both chr7 9 150217337 150217408 View Cys GCA atgacaagca actgcacttt 0 0 65.84 49.63 16.21 Both chr7 8 150209581 150209652 View Cys GCA tagaagctga ggaaagagtc 0 0 69.62 50.30 19.32 Both chr7 11 150239566 150239637 View Cys GCA acctatgact acactgttct 0 0 69.82 51.63 18.19 Both chr7 15 150322299 150322228 View Cys GCA tgtggcccat gctggttttc 0 0 71.03 55.49 15.54 Both chr7 13 150295809 150295880 View Cys GCA caccaggcaa gatgccactt 0 0 71.19 49.16 22.03 Both chr7 23 150015303 150015232 View Cys GCA taatgtaact agcattttaa 0 0 71.19 49.16 22.03 Both chr17 7 18697458 18697529 View Cys GCA ctctggtaga cacagccacc 0 0 71.26 49.77 21.49 Both chr7 16 150277982 150277911 View Cys GCA gtaagtaggt ctctagttca 0 0 73.31 51.65 21.66 Both chr3 6 136776537 136776466 View Cys GCA ttaccagcat gtgcatttgt 0 0 74.20 55.02 19.18 Both chr7 12 150266645 150266716 View Cys GCA ccctgggcct accctgtttc 0 0 74.20 55.02 19.18 Both chr7 14 150338568 150338639 View Cys GCA acttccatca gctgtgttct 0 0 74.20 55.02 19.18 Both chr7 17 150243993 150243922 View Cys GCA gtagtcaaat ccctgttttc 0 0 74.20 55.02 19.18 Both chr7 20 150037581 150037510 View Cys GCA tgagtagctt ttgtcactac 0 0 74.20 55.02 19.18 Both chr7 21 150035813 150035742 View Cys GCA gagtaccttg ttgtcactac 0 0 74.20 55.02 19.18 Both chr7 7 149990755 149990826 View Cys GCA gacaaggcct attcctttta 0 0 74.20 55.02 19.18 Both chr14 8 72660747 72660818 View Cys GCA gataggtgaa tcccggatgt 0 0 74.26 55.02 19.24 Both chr1 64 95015567 95015495 View Cys GCA aacaggtaaa tccaggatgt 0 0 74.38 55.13 19.25 Both chr3 7 136773833 136773762 View Cys GCA ttagcatcga atgacatact 0 0 74.42 58.96 15.46 Both chr7 18 150073314 150073243 View Cys GCA cctgtgtgac gaacagtggc 0 0 75.26 56.02 19.24 Both chr4 2 126918673 126918602 View Cys GCA aagcagtggc ctgtgctctg 0 0 75.81 59.29 16.52 Both chr17 6 18689215 18689286 View Cys GCA gtagaggcgc cagtggtttg 0 0 77.18 59.26 17.92 Both chr7 6 149969132 149969203 View Cys GCA aatggcagca agttttcttc 0 0 77.65 58.48 19.17 Both chr17 4 18396690 18396761 View Cys GCA gtggcgtggc ctacgctccg 0 0 77.71 58.47 19.24 Both chr17 41 18690938 18690867 View Cys GCA taccagcaga tgggtttctt 0 0 77.71 58.47 19.24 Both chr17 5 18397447 18397518 View Cys GCA tgtcggcaga ctttggcctt 0 0 77.71 58.47 19.24 Both   chr1_random 5 5760595 5760666 View Gln CTG tgcattatga ttctgtgtaa 0 0 59.11 38.80 20.31 Both chr1 7 128615235 128615306 View Gln CTG cgtattgtga ttctgtttaa 0 0 65.53 42.24 23.29 Both chr1_random 2 5467990 5468061 View Gln CTG cgcacagcga ttctgtttaa 0 0 70.16 46.87 23.29 Both chr6 42 27796991 27797062 View Gln CTG ttcagcttca tggttttagt 0 0 71.47 48.18 23.29 Both chr6 148 28057016 28056945 View Gln CTG taccaagagg gctcgaggat 0 0 72.00 48.70 23.30 Both chr15 8 63515440 63515369 View Gln CTG cacgcgtggc gtattggttt 0 0 73.65 50.36 23.29 Both chr17 30 48394107 48394036 View Gln CTG gcacgaggga taaatctttt 0 0 73.65 50.36 23.29 Both chr6 1 19194444 19194515 View Gln CTG cagggaggag ttcatattgg 0 0 73.65 50.36 23.29 Both chr6 100 29467009 29466938 View Gln CTG tgccgaggac ttcatgtctc 0 0 73.65 50.36 23.29 Both chr6 50 28027533 28027604 View Gln CTG ggtattgcga gtcctcctgc 0 0 73.65 50.36 23.29 Both chr4 3 41284523 41284451 View Gln TTG ggagagagga aaatgtttcc 0 0 31.57 26.05 5.52 Both chr6 85 147725704 147725775 View Gln TTG attttgggtt ttcaaaggag 0 0 52.45 40.44 12.01 Both chr6 132 28311631 28311560 View Gln TTG gcttataggt tcttggctct 0 0 68.31 52.31 16.00 Both chr6 174 26806988 26806917 View Gln TTG ctgtgttgtt accaaacttt 0 0 68.31 52.31 16.00 Both chr6 175 26806444 26806373 View Gln TTG ggtggaaggt gtcctgcttt 0 0 68.31 52.31 16.00 Both chr6 65 29102237 29102308 View Gln TTG ccttgtggtt ttcaaaggtg 0 0 71.88 48.94 22.94 Both chr17 42 8586685 8586614 View Gln TTG gcagctagca caggagactt 0 0 73.77 50.83 22.94 Both   chr1_random 51 5369635 5369564 View Glu CTC ttcagcagct aggggtaata 0 0 63.79 56.62 7.17 Both chr1 36 140742085 140742014 View Glu CTC aagccgtctc gccttccttc 0 0 76.61 53.94 22.67 Both chr1_random 24 7856872 7856943 View Glu CTC cattatgtct gtaaactgtt 0 0 76.61 53.94 22.67 Both chr1_random 54 5356560 5356489 View Glu CTC tttagcagct agagtaatat 0 0 76.61 53.94 22.67 Both chr1_random 62 4932447 4932376 View Glu CTC tttagcatcc agagtagtac 0 0 76.61 53.94 22.67 Both chr6 78 29495192 29495263 View Glu CTC tatttcagct tgaggttttt 0 0 76.61 53.94 22.67 Both chr6 87 127958452 127958381 View Glu CTC ttaagtaagt aacttgtttt 0 0 76.61 53.94 22.67 Both chr1 49 128707499 128707428 View Glu TTC tgctggtgtt tacatgcttt 0 0 51.44 41.99 9.45 Both chr1 55 128457471 128457400 View Glu TTC cagcctgatc cgttttgcac 0 0 51.82 45.67 6.15 Both chr1_random 45 5780998 5780927 View Glu TTC tctgtccgct tgcgttttgc 0 0 53.05 43.87 9.18 Both chr1 52 128591418 128591347 View Glu TTC tctgttggct tgacttttgc 0 0 62.33 44.09 18.24 Both chr1_random 32 6402337 6402266 View Glu TTC ctcctgtgtg ttgttttaca 0 0 68.58 50.23 18.35 Both chr1 39 140717557 140717486 View Glu TTC tcatcacccc gtttgctttt 0 0 72.33 49.66 22.67 Both chr1 66 16886206 16886135 View Glu TTC ctcctgtgtg ttgttttaca 0 0 72.33 49.66 22.67 Both chr1_random 14 6555818 6555889 View Glu TTC ctcctgtgtg ttgttttaca 0 0 72.33 49.66 22.67 Both chr1_random 20 6619882 6619953 View Glu TTC ctcctgtgtg ttgttttaca 0 0 72.33 49.66 22.67 Both chr1_random 30 6428560 6428489 View Glu TTC ctcctgtgtg ttgttttaca 0 0 72.33 49.66 22.67 Both chr1_random 34 6388816 6388745 View Glu TTC ctcctgtgtg ttgttttaca 0 0 72.33 49.66 22.67 Both chr13 3 40895292 40895221 View Glu TTC tcgtagcact cgctgcctta 0 0 75.00 51.69 23.31 Both chr2b 14 131250625 131250554 View Glu TTC ttttagcggt cagaaagggc 0 0 75.00 51.69 23.31 Both chr13_random 1 7422761 7422690 View Glu TTC tgtcgtcgtc cgccgaaatt 0 0 76.26 53.72 22.54 Both chr15 12 23536702 23536631 View Glu TTC tctcgtcatc tggccgaatc 0 0 76.26 53.72 22.54 Both   chr1_random 26 6495595 6495525 View Gly CCC ctgcagagag agtgggtctt 0 0 58.97 47.42 11.55 Both chr17 39 36415378 36415308 View Gly CCC tagttacaaa gctcccacct 0 0 70.13 54.55 15.58 Both chr1_random 16 6562255 6562325 View Gly CCC ctgtggagag gcagggactt 0 0 71.61 57.83 13.78 Both chrUn 10 33002438 33002368 View Gly CCC ctgtggagag gcagggactt 0 0 71.61 57.83 13.78 Both chr1_random 29 6434281 6434211 View Gly CCC ctacacagag acagggtctt 0 0 72.36 58.40 13.96 Both chr1 68 16773359 16773289 View Gly CCC ctatgcagag acggggtctt 0 0 74.01 56.95 17.06 Both chr2a 11 71787553 71787483 View Gly CCC tacctcaaca caagcgtttt 0 0 76.98 51.05 25.93 Both chr1_random 18 6608191 6608261 View Gly CCC ctacgcagag acagggtctt 0 0 77.10 55.88 21.22 Both chr1_random 19 6609227 6609297 View Gly CCC ctatgcagag acagggtctt 0 0 77.10 55.88 21.22 Both chr1 46 128723663 128723593 View Gly CCC ctagatagag aaagtttttt 0 0 77.77 57.64 20.13 Both chr1_random 12 6419752 6419822 View Gly CCC ctgtggagag acagggactt 0 0 78.31 58.27 20.04 Both chr16 19 70632195 70632265 View Gly GCC aacagctaga atgcagtgtt 0 0 57.34 47.95 9.39 Both chr1_random 6 6198055 6198125 View Gly GCC tgccatcagt gcacgccctc 0 0 69.02 51.48 17.54 Both chr16 25 70621790 70621720 View Gly GCC gccagctgga gcctatctac 0 0 73.97 55.63 18.34 Both chr16 24 70622615 70622545 View Gly GCC ctcagctgga gcagcggaaa 0 0 74.71 54.66 20.05 Both chr1 32 140807105 140807035 View Gly GCC gccgacagta ctctcagcct 0 0 81.62 61.57 20.05 Both chr16 20 70633008 70633078 View Gly GCC cacatctggg gcagaccttt 0 0 81.62 61.57 20.05 Both chr1_random 38 6246839 6246769 View Gly GCC gccgacagta ctctcagcct 0 0 81.62 61.57 20.05 Both chr2b 13 160995893 160995823 View Gly GCC tttgctataa agttttgact 0 0 81.62 61.57 20.05 Both chr6 130 28416188 28416118 View Gly GCC cgtatgcgag gcgatgatgt 0 0 81.62 61.57 20.05 Both chr1 13 140748763 140748833 View Gly GCC tgccatcggt gcacgccctc 0 0 82.15 62.58 19.57 Both chr21 2 17559227 17559157 View Gly GCC ttctattgga gtatgagaat 0 0 82.15 62.58 19.57 Both chr1 15 140814870 140814941 View Gly TCC aacggggtac agggtttttg 0 0 67.29 52.85 14.44 Both chr1 37 140734968 140734897 View Gly TCC gggccgtgcg gcgggcggac 0 0 67.51 53.00 14.51 Both chr17 36 48286428 48286357 View Gly TCC tagcacccga agtcgttttt 0 0 71.94 51.51 20.43 Both chr1 35 140742443 140742372 View Gly TCC gcgccgtgtg gcgggcggac 0 0 73.26 52.83 20.43 Both chr1_random 55 5355184 5355113 View Gly TCC tatttcagat gtgctggttt 0 0 73.26 52.83 20.43 Both chr1_random 63 4931076 4931005 View Gly TCC tgtttcagat gtatcggttc 0 0 73.26 52.83 20.43 Both chr19 2 4796713 4796784 View Gly TCC acctacgaat tgcgatgtta 0 0 76.83 56.40 20.43 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrUn 14 3191214 3191143 View His GTG cctgtggctt atgtccttag 0 0 42.82 18.96 23.86 Both chr1 60 113033692 113033621 View His GTG cctgtggccc aagttgctcg 0 0 64.63 37.18 27.45 Both chr15 10 42372801 42372730 View His GTG ccggtagctc ttgtgggaac 0 0 64.63 37.18 27.45 Both chr15 9 42374590 42374519 View His GTG ctagtagctc ttgtgaagac 0 0 64.63 37.18 27.45 Both chr1_random 4 5712687 5712758 View His GTG cttgtggctc atgtcgttag 0 0 64.63 37.18 27.45 Both chr1_random 46 5777609 5777538 View His GTG cttgtggctc atgtcgttag 0 0 64.63 37.18 27.45 Both chr1_random 56 5354204 5354133 View His GTG ttagtggctc ggtggttcta 0 0 64.63 37.18 27.45 Both chr6 32 27653170 27653241 View His GTG ctggtggcgt gtactttgat 0 0 64.63 37.18 27.45 Both chr9 7 14802022 14801951 View His GTG tcagtagctt ggaggggaga 0 0 64.63 37.18 27.45 Both chr1 53 128585635 128585564 View His GTG cctgtggctc atgtcgtttg 0 0 66.59 44.22 22.37 Both   chr17 12 48280911 48280984 View Ile AAT ggaaattagt gtgggtggct 0 0 62.25 53.89 8.36 Eufind chr6 37 27773734 27773807 View Ile AAT ccaaaatgtt catattttcc 0 0 64.60 50.89 13.71 Both chr6 58 28181486 28181559 View Ile AAT gcattcgtgt ctggatgtca 0 0 76.74 58.25 18.49 Both chr14 10 102763940 102764013 View Ile AAT agcatcaagc gtctagcttt 0 0 80.66 62.17 18.49 Both chr17 35 48321889 48321816 View Ile AAT cgtaaagact agacttaaaa 0 0 80.66 62.17 18.49 Both chr6 11 27051567 27051640 View Ile AAT agaggcaggt actttgtttt 0 0 80.66 62.17 18.49 Both chr6 156 27737511 27737438 View Ile AAT ttttccgggt caagggttct 0 0 80.66 62.17 18.49 Both chr6 160 27676326 27676253 View Ile AAT ccaccaagga cttacgtacg 0 0 80.66 62.17 18.49 Both chr6 161 27675174 27675101 View Ile AAT ccaccaagga cttacgtagg 0 0 80.66 62.17 18.49 Both chr6 166 27220462 27220389 View Ile AAT tccccagcgg cgggcttttc 0 0 80.66 62.17 18.49 Both chr6 155 27775023 27774950 View Ile AAT ccccagcgtc cgtattttcc 0 0 82.10 61.21 20.89 Both chr6 164 27246355 27246282 View Ile AAT tagtaagcgg aacgtggttt 0 0 82.24 58.60 23.64 Both chr6 60 28201362 28201435 View Ile AAT cttgtcatcc ggtgttccct 0 0 84.69 61.05 23.64 Both chr6 81 59546576 59546649 View Ile AAT taaaaagtgg cgcgtgacct 0 0 84.69 61.05 23.64 Both chrX 4 3780539 3780466 View Ile GAT gtggtcaggc cggtgtgagc 0 0 75.30 48.70 26.60 Both chr6 28 27511297 27511390 View Ile TAT gaagctgggt ttgttttcca 27511335 27511354 67.58 39.38 28.20 Both chr6 56 28143962 28144055 View Ile TAT aggaaagcat tgttttcttc 28144000 28144019 68.23 40.03 28.20 Both chr6 64 29049927 29050020 View Ile TAT catttctgtg gttttactat 29049965 29049984 65.86 37.67 28.19 Both chr2a 5 43830974 43831066 View Ile TAT gttcagcaga agaccctttt 43831012 43831030 68.75 40.56 28.19 Both chr19 8 44996646 44996554 View Ile TAT tgcggccgga ctttttttcc 44996608 44996590 68.39 40.19 28.20 Both   chr6 79 29502833 29502914 View Leu AAG tgtaatcaac agtacttttc 0 0 51.65 38.23 13.42 Both chr14 1 19546511 19546592 View Leu AAG ttagccagta gctgtttacc 0 0 69.84 50.16 19.68 Both chr16 17 22560044 22560125 View Leu AAG attgcagctg gggttgctgt 0 0 69.84 50.16 19.68 Both chr5 8 183682981 183683062 View Leu AAG gcggcgaaga gtttgttgta 0 0 69.84 50.16 19.68 Both chr6 128 28984745 28984664 View Leu AAG gcactagcgt ggtttattgc 0 0 69.84 50.16 19.68 Both chr6 99 29469052 29468971 View Leu AAG ccctacgggt gtgtgaggta 0 0 69.84 50.16 19.68 Both chr5 20 183596437 183596356 View Leu AAG ccagaaggag gcttgttgtg 0 0 71.96 50.58 21.38 Both chr5 6 183599870 183599951 View Leu AAG ccagaaggag gcttgttgtg 0 0 71.96 50.58 21.38 Both chr1_random 37 6252063 6251981 View Leu CAA caaaacgtgt acgtatgttt 0 0 53.33 28.11 25.22 Both chr12 15 33443672 33443591 View Leu CAA ggttctggaa ggttttttgt 0 0 89.19 63.55 25.64 Both chr6 143 28114628 28114522 View Leu CAA aacagtacgt cagctctttt 28114590 28114568 68.19 42.41 25.78 Both chr6 142 28118161 28118054 View Leu CAA ttgtcacagt cagtccgata 28118123 28118100 68.53 44.44 24.09 Both chr6 101 29421489 29421384 View Leu CAA tatgcagcgt catacttttc 29421451 29421429 68.23 44.80 23.43 Both chr6 75 29466391 29466495 View Leu CAA ggtcccaggt caaccatctt 29466429 29466450 70.37 46.93 23.44 Both chr1_random 23 7856479 7856584 View Leu CAA gcttccgagt cattcgtttt 7856517 7856538 66.34 45.92 20.42 Both chr2a 6 45300648 45300730 View Leu CAG ctccaaagca aagctgaatt 0 0 35.94 26.99 8.95 Both chr6 7 27019092 27019175 View Leu CAG gcataagtgg gttgctactt 0 0 73.02 44.53 28.49 Both chr16 18 56741118 56741200 View Leu CAG cttttaggaa agtgctcttt 0 0 75.90 46.89 29.01 Both chr16 26 56741728 56741646 View Leu CAG acttgaagca gagcggcatt 0 0 75.90 46.89 29.01 Both chr1 12 140747019 140747101 View Leu CAG ccggcgcgcc agccgacctt 0 0 77.22 46.89 30.33 Both chr1 31 140814181 140814099 View Leu CAG taaaatgtgt acgtatgttt 0 0 77.22 46.89 30.33 Both chr2a 9 83144618 83144692 View Leu TAA aacagagttt acacacccat 0 0 39.23 16.10 23.13 Both chrM 1 2648 2722 View Leu TAA aacagagttt acacacccat 0 0 39.23 16.10 23.13 Both chr7 25 72707506 72707432 View Leu TAA aacagggttt atatacccat 0 0 41.12 17.30 23.82 Both chr9 2 22997351 22997425 View Leu TAA aacagagttt atatacccat 0 0 41.12 17.30 23.82 Both chr4 1 159692813 159692739 View Leu TAA aacagggttt atatgcctat 0 0 46.53 14.57 31.96 Both chr11 4 57762732 57762814 View Leu TAA ctcatcaatt aagagtagtt 0 0 79.52 46.13 33.39 Both chr6 136 28236164 28236082 View Leu TAA tgccccagtc ggttaagttt 0 0 80.48 52.10 28.38 Both chr6 84 146742771 146742853 View Leu TAA caacgtctgc gcttcaggtt 0 0 80.77 49.66 31.11 Both chr16 28 22457326 22457245 View Leu TAG acgagcggga caccccagaa 0 0 68.14 45.54 22.60 Both chr14 2 19561801 19561882 View Leu TAG taacgtgtgt ctggtatgtt 0 0 68.82 48.37 20.45 Both chr17 20 48393486 48393567 View Leu TAG atttcgttca ggctggagtt 0 0 72.19 50.81 21.38 Both   chr1 65 55942761 55942689 View Lys CTT tgttgcaaaa ccaaattgtt 0 0 58.75 43.75 15.00 Eufind chr1_random 33 6399445 6399372 View Lys CTT aatagtggtt tggttttaaa 0 0 60.40 44.26 16.14 Both chr18 4 42311890 42311818 View Lys CTT catcaggtgg ccagatgaag 0 0 60.42 45.64 14.78 Eufind chr5 3 89742221 89742293 View Lys CTT atgaaatcaa ccagatgaag 0 0 73.82 56.68 17.14 Both chr16 5 3287199 3287271 View Lys CTT tattacatca gagcttttac 0 0 75.32 54.02 21.30 Both chr5 12 183717694 183717622 View Lys CTT aaacacgacc taacttcctt 0 0 76.19 53.54 22.65 Both chr16 10 3315455 3315527 View Lys CTT tcccagggaa acttgttttc 0 0 80.47 57.81 22.66 Both chr16 31 3304477 3304405 View Lys CTT gtataaggaa tgccttttga 0 0 80.47 57.81 22.66 Both chr16 33 3279227 3279155 View Lys CTT tttcgtagcc tcagattttg 0 0 80.47 57.81 22.66 Both chr16 7 3297935 3298007 View Lys CTT ttggcgtgtc atgccttttt 0 0 80.47 57.81 22.66 Both chr1_random 53 5364226 5364154 View Lys CTT gttaatcagt ctgtgttttt 0 0 80.47 57.81 22.66 Both chr1_random 57 5350860 5350788 View Lys CTT attaatcagt ctgtgttttt 0 0 80.47 57.81 22.66 Both chr5 10 183703404 183703476 View Lys CTT gttatcgggc gcaactggtc 0 0 80.47 57.81 22.66 Both chr6 13 27053972 27054044 View Lys CTT acctgtgtga ctctggtttt 0 0 80.47 57.81 22.66 Both chr14 13 57583691 57583619 View Lys CTT tgtaataggc caggttatat 0 0 80.72 58.28 22.44 Both chr15 3 76793149 76793221 View Lys CTT ttctctaact gctttgtttt 0 0 80.72 58.28 22.44 Both chr19 6 55268093 55268021 View Lys TTT cctgaaggga cgttcagtgg 0 0 48.15 42.78 5.37 Both chr6 54 28085976 28086048 View Lys TTT tcgtaaaaga ttgagtgtag 0 0 56.29 47.99 8.30 Both chr1 22 185621225 185621297 View Lys TTT aggcaggtga tcctattttg 0 0 59.23 47.79 11.44 Eufind chr6 151 27838338 27838266 View Lys TTT tccttaagga ctaaaaatgt 0 0 79.74 63.18 16.56 Both chr6_random 1 2266164 2266236 View Lys TTT tccttaagga ctaaaaatgt 0 0 81.41 62.43 18.98 Both chr6 145 28103519 28103447 View Lys TTT agcgtacgga aagttcagaa 0 0 83.31 61.95 21.36 Both chr6 72 29266896 29266968 View Lys TTT tctaccgggg gaatagttgt 0 0 83.31 61.95 21.36 Both chr1 21 184624616 184624688 View Lys TTT attcgggagc ttgtgctttt 0 0 83.80 62.78 21.02 Both chr1 27 184625188 184625116 View Lys TTT acctacggga tgttgttcct 0 0 83.80 62.78 21.02 Both chr11 17 57771385 57771313 View Lys TTT gctgccgtga gcgttgtttt 0 0 83.80 62.78 21.02 Both chr11 5 57767379 57767451 View Lys TTT ttcttcaggg gatgctgttt 0 0 83.80 62.78 21.02 Both chr17 29 48394704 48394632 View Lys TTT caaacgtaga gctcgttttt 0 0 83.80 62.78 21.02 Both chr6 77 29476392 29476464 View Lys TTT tttacaggga agagcggtgg 0 0 83.80 62.78 21.02 Both chr11 14 121495284 121495356 View Lys TTT gtaatgggta acggcgtttc 0 0 83.96 62.60 21.36 Both chr16 23 73366441 73366369 View Lys TTT cagggaagaa tgtcatatgg 0 0 84.43 63.07 21.36 Both   chr1_random 17 6606471 6606543 View Met CAT tgcatatgca tcgtgttttg 0 0 37.80 31.64 6.16 Both chr11 1 9184586 9184659 View Met CAT tcttttagct accttattaa 0 0 55.15 50.10 5.05 Eufind chr6 162 27263095 27263023 View Met CAT gcacgtcgtc gcttttgcaa 0 0 57.66 40.94 16.72 Eufind chr6 27 27273054 27273126 View Met CAT gcacttcgtc gcttttgcaa 0 0 64.84 50.98 13.86 Eufind chr1 9 132801754 132801825 View Met CAT agttctagat tcgaagtttt 0 0 68.98 40.96 28.02 Both chr17 24 82730549 82730478 View Met CAT ccttatagcc tagactccct 0 0 68.98 40.96 28.02 Both chr6 131 28415773 28415702 View Met CAT taccgtatag tttttttttt 0 0 68.98 40.96 28.02 Both chr6 144 28104525 28104454 View Met CAT ttaagggaac ggtgcgtggt 0 0 68.98 40.96 28.02 Both chr6 152 27836336 27836265 View Met CAT agaaccgctt cgagttttac 0 0 68.98 40.96 28.02 Both chr6 170 26826069 26825998 View Met CAT ttactcgtgt gggagtgttt 0 0 68.98 40.96 28.02 Both chr6 172 26808365 26808294 View Met CAT ctgtcgaaac tatggccgcg 0 0 68.98 40.96 28.02 Both chr6 2 26780967 26781038 View Met CAT ctggcagaac ggtttttttt 0 0 68.98 40.96 28.02 Both chr6 62 28293564 28293635 View Met CAT ctttttcgtc aagaacagcg 0 0 68.98 40.96 28.02 Both chr6 93 59566106 59566034 View Met CAT tcaactgcaa tcgcttttgc 0 0 69.18 51.02 18.16 Both chr6 163 27259589 27259517 View Met CAT gcacttcgtc gcttttgcaa 0 0 72.51 54.41 18.10 Both chr6 165 27235913 27235841 View Met CAT gtacttcgtc gcttttgcaa 0 0 72.51 54.41 18.10 Both chr6 76 29469925 29469997 View Met CAT agggacagtt aggcgtctct 0 0 73.95 55.52 18.43 Both chr16 22 87720479 87720407 View Met CAT tcgttgagca gcctagcgtt 0 0 74.51 54.15 20.36 Both chr6 21 27200981 27201053 View Met CAT tcaacagcaa tcacttttgc 0 0 75.06 52.49 22.57 Both chr6 98 29478714 29478642 View Met CAT ctagttgtct gctgctgttt 0 0 76.58 56.44 20.14 Both chr16 21 71281712 71281784 View Met CAT ctaactacag gctgttttgt 0 0 78.21 55.64 22.57 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr1 47 128716361 128716290 View Phe GAA tttccgcatc ttgttttgca 0 0 44.54 34.55 9.99 Both chr6 114 29282770 29282697 View Phe GAA gcttagagta agcatctttt 0 0 56.54 37.72 18.82 Both chr6 106 29337433 29337361 View Phe GAA ctccagagta gatacctttt 0 0 80.56 61.23 19.33 Both chr6 112 29304297 29304225 View Phe GAA agttcgggaa gggttttttt 0 0 82.30 62.97 19.33 Both chr11 16 57777798 57777726 View Phe GAA ttccagggca gcgcttccgt 0 0 82.45 60.84 21.61 Both chr6 109 29321390 29321318 View Phe GAA gatcacagtg gttgcacttt 0 0 82.45 60.84 21.61 Both chr11 18 57768519 57768447 View Phe GAA tcatgtcttc ggccttttgt 0 0 84.19 62.58 21.61 Both chr12 9 126841321 126841249 View Phe GAA tacaacagct gttcctcttt 0 0 84.19 62.58 21.61 Both chr13 1 95259164 95259092 View Phe GAA ccaacaacat gctactttta 0 0 84.19 62.58 21.61 Both chr19 12 1352788 1352716 View Phe GAA ctcccgccca gaagttttag 0 0 84.19 62.58 21.61 Both chr6 97 29494733 29494661 View Phe GAA cgtgggcgga tgagagcgct 0 0 84.19 62.58 21.61 Both   chr16 30 3306557 3306486 View Pro AGG taaggcgtgt ggtttttggt 0 0 68.27 47.77 20.50 Both chr16 11 3315943 3316014 View Pro AGG ttgctgctgt ctcttcttaa 0 0 68.93 52.54 16.39 Both chr14 23 19545786 19545715 View Pro AGG atttataggt tgttctcttt 0 0 69.27 49.51 19.76 Both chr6 12 27052717 27052788 View Pro AGG atgctcaggc tagttttgtc 0 0 69.60 49.48 20.12 Both chr1 30 147077080 147077009 View Pro AGG agtttatgtc tattttggag 0 0 75.92 53.85 22.07 Both chr11 9 74619456 74619527 View Pro AGG tacgagcgac tcattttctt 0 0 75.92 53.85 22.07 Both chr14 22 19549858 19549787 View Pro AGG tttgtaaagc tcgctctttt 0 0 75.92 53.85 22.07 Both chr16 9 3313588 3313659 View Pro AGG taagttgtgt ggcttttggt 0 0 75.92 53.85 22.07 Both chr7 3 129185460 129185531 View Pro AGG aactaccagt tgctttttct 0 0 75.92 53.85 22.07 Both chr16 4 3282651 3282745 View Pro AGG tcttccgctt acactttaag 3282687 3282702 39.15 32.41 6.74 Both chr1 19 147076245 147076316 View Pro CGG tgccgagagc aggcttttac 0 0 76.52 54.46 22.06 Both chr17 15 48285067 48285138 View Pro CGG tctgcacgtc tcctttacct 0 0 76.52 54.46 22.06 Both chr1_random 65 904768 904697 View Pro CGG tgccgagagc aggcttttac 0 0 76.52 54.46 22.06 Both chr6 29 27582713 27582784 View Pro CGG atttccaagt acttcatttt 0 0 76.52 54.46 22.06 Both chr16 6 3294294 3294365 View Pro CGG acgcatggga tagaggtggt 0 0 78.33 56.27 22.06 Both chr16 8 3312048 3312119 View Pro TGG aggaagcggc ccttttcctt 0 0 68.57 47.49 21.08 Both chr14 6 19632702 19632773 View Pro TGG caaatacagt tcaggattat 0 0 76.15 54.09 22.06 Both chr16 29 3308055 3307984 View Pro TGG agcaagcggc ccttttcctt 0 0 76.15 54.09 22.06 Both chr16 3 3280672 3280743 View Pro TGG ttgtcgtctt gctttttttt 0 0 76.15 54.09 22.06 Both chr5 15 183684212 183684141 View Pro TGG ctgaacagcc acttttcctt 0 0 76.15 54.09 22.06 Both chr11 15 74619840 74619769 View Pro TGG ctcagtagct ctcttttctt 0 0 76.24 54.23 22.01 Both chr14 3 19569418 19569489 View Pro TGG ttccagttct ctttgctttc 0 0 79.61 57.55 22.06 Both   chr22 1 43265210 43265295 View SeC(e) TCA ggcaccaaaa cccggcgcag 0 0 65.60 0.00 0.00 Eufind chr19 7 51090616 51090531 View SeC(e) TCA aggttcctct ggtagtagct 0 0 75.99 0.00 0.00 Eufind   chr6_random 2 3460740 3460813 View Ser ACT atttgtagtc ttgacttttc 0 0 66.94 47.85 19.09 Eufind chr6 41 27795391 27795464 View Ser ACT atttgtagtc ttgacttttc 0 0 72.22 53.72 18.50 Eufind chr6 51 28041447 28041528 View Ser AGA cgtccttcac gtccctttct 0 0 83.97 52.80 31.17 Both chr17 13 48281281 48281362 View Ser AGA cataagtctc tcatattttt 0 0 88.01 56.90 31.11 Both chr6 44 27984387 27984468 View Ser AGA ctccattcgt ggatgtttta 0 0 88.01 56.90 31.11 Both chr6 46 27999745 27999826 View Ser AGA tttcacagct gggtggtttt 0 0 88.01 56.90 31.11 Both chr6 47 28008951 28009032 View Ser AGA gtgattccgt agttccaggt 0 0 88.01 56.90 31.11 Both chr6 48 28011075 28011156 View Ser AGA gtgattccgt agttccaggt 0 0 88.01 56.90 31.11 Both chr6 5 26823199 26823280 View Ser AGA tttagtacct gcagtgggct 0 0 88.01 56.90 31.11 Both chr8 9 94107970 94107889 View Ser AGA cacacagcga ggaatgtcag 0 0 88.01 56.90 31.11 Both chr6 149 28051023 28050942 View Ser AGA cattctttgt ataacgtttc 0 0 88.50 57.39 31.11 Both chr6 147 28062709 28062628 View Ser AGA tgtcatgtct ctagaaattt 0 0 88.52 57.67 30.85 Both chr6 139 28185486 28185405 View Ser CGA tgtccccgga ttgccatttt 0 0 89.16 57.73 31.43 Both chr6 34 27709555 27709636 View Ser CGA catttagagg cttctcggta 0 0 90.35 61.17 29.18 Both chr17 19 48374653 48374734 View Ser CGA agcgcacgcg tcagtagttt 0 0 92.09 62.91 29.18 Both chr6 63 28698562 28698643 View Ser GCT ttcttcgtgt gctgcatggc 0 0 81.05 53.49 27.56 Both chr6 30 27589221 27589302 View Ser GCT ggggtatcaa ggggaggtct 0 0 84.54 60.04 24.50 Both chr15 11 37580260 37580179 View Ser GCT aacttagcgc atgtggtgac 0 0 85.34 57.77 27.57 Both chr17 33 48322615 48322534 View Ser GCT gttgtgtgta gctaaggaag 0 0 85.34 57.77 27.57 Both chr6 176 26800713 26800632 View Ser GCT ccggccatgt ctcggctttc 0 0 85.34 57.77 27.57 Both chr11 7 64812945 64813026 View Ser GCT tatcacgtag gccctgtttt 0 0 85.83 58.25 27.58 Both chr6 125 29110263 29110182 View Ser GCT cttagcatgt tttctggagg 0 0 86.00 55.46 30.54 Both chr6 43 27799556 27799637 View Ser GCT tcaccggaag accgttttct 0 0 86.80 59.22 27.58 Both chr6_random 3 3464287 3464368 View Ser GCT tcaccgggag accgttttct 0 0 86.80 59.22 27.58 Both chr6 150 28013944 28013863 View Ser TGA acacacgtac gtttggtttt 0 0 84.78 57.77 27.01 Both chr6 173 26807847 26807766 View Ser TGA aaggaggtgc gcgtgcttct 0 0 88.25 57.14 31.11 Both chr6 52 28054856 28054937 View Ser TGA ccgtaggtag gttttaccgg 0 0 88.73 57.62 31.11 Both chr10 3 66752464 66752545 View Ser TGA tatccttgtg gaagcaggtg 0 0 90.86 62.33 28.53 Both   chr6 133 28307103 28307032 View Sup CTA ctagcaaatt agcttgccgt 0 0 64.16 50.08 14.08 Both chr17 21 60034522 60034592 View Sup TTA gtatgaggga tgtccttcgg 0 0 57.62 48.12 9.50 Eufind   chr6 61 28242057 28242131 View Thr AGT acacaggtga ctttatttct 0 0 72.41 52.63 19.78 Both chr6 33 27657340 27657413 View Thr AGT gcccaagagg tacgtgttca 0 0 80.30 60.85 19.45 Both chr17 18 48374100 48374173 View Thr AGT cttttacgcc aagttagcgg 0 0 81.60 62.00 19.60 Both chr6 70 29244604 29244677 View Thr AGT agtttccgtg tggttggcaa 0 0 82.57 63.01 19.56 Both chr6 137 28197907 28197834 View Thr AGT tctcggctgt tgctttctgt 0 0 83.05 63.49 19.56 Both chr6 168 27032683 27032610 View Thr AGT gagtcacggt gttgtagttt 0 0 83.05 63.49 19.56 Both chr17 34 48322322 48322249 View Thr AGT cccttccggc ccttgtttcc 0 0 84.06 64.45 19.61 Both chr19 4 38613421 38613494 View Thr AGT ctgcacgggt caaccgagcg 0 0 84.06 64.45 19.61 Both chr17 14 48281660 48281733 View Thr AGT tggcagcttc ttattcaatt 0 0 85.95 64.05 21.90 Both chr17 40 25724086 25724015 View Thr CGT nnnnnnnnca gagacccgag 0 0 79.77 59.88 19.89 Both chr6 123 29161901 29161828 View Thr CGT ctgcacagct tagggtgtgc 0 0 80.30 62.20 18.10 Both chr16 16 14712488 14712559 View Thr CGT ttgcaacgca gatatccagc 0 0 80.42 57.57 22.85 Both chr6 127 29000350 29000277 View Thr CGT gcttccgcgt gatgttttcc 0 0 80.88 62.42 18.46 Both chr14 4 19630388 19630460 View Thr TGT tactgcgtga taagaaacta 0 0 78.79 56.36 22.43 Both chr14 21 19550248 19550176 View Thr TGT aacaggcaag gtgcgttttt 0 0 79.22 56.68 22.54 Both chr14 20 19567645 19567573 View Thr TGT ctcctgtggc cggctgtagg 0 0 79.46 56.92 22.54 Both chr5 14 183687046 183686974 View Thr TGT acccacagct gcttccgttt 0 0 79.46 56.92 22.54 Both chr1 23 203140762 203140834 View Thr TGT ggctcacgtg cctgttggct 0 0 83.03 60.49 22.54 Both chr6 129 28980667 28980594 View Thr TGT tgcgcatgtg caaggttttc 0 0 84.08 63.38 20.70 Both   chr12 4 99553946 99554017 View Trp CCA agcccagcag agnnnnnnnn 0 0 71.65 49.85 21.80 Both chr17 32 48323123 48323052 View Trp CCA gtggccggcc gcggctattt 0 0 74.00 52.21 21.79 Both chr6 169 26827216 26827145 View Trp CCA gtgtcccgga acagttttta 0 0 74.00 52.21 21.79 Both chr6 171 26814775 26814704 View Trp CCA ggatttctgt tgggtggttg 0 0 74.00 52.21 21.79 Both chr7 2 99237534 99237605 View Trp CCA aggcttccaa aacatgtgat 0 0 74.00 52.21 21.79 Both chr17 38 36782743 36782672 View Trp CCA agttcggtgt aggttgggtt 0 0 74.80 53.00 21.80 Both chr17 17 48287047 48287118 View Trp CCA gccttggaca aacgaaatat 0 0 74.81 54.94 19.87 Both   chr2b 7 224155442 224155534 View Tyr ATA agttaaggtc gacaagtaca 224155479 224155498 59.09 35.42 23.67 Both chr14 19 19599909 19599816 View Tyr GTA aaacgtgcgc ggtgctgtat 19599872 19599852 73.44 47.03 26.41 Both chr14 18 19604344 19604251 View Tyr GTA cagcatgcac agtgcgtgat 19604307 19604287 75.34 48.94 26.40 Both chr14 17 19606839 19606746 View Tyr GTA caacgtgcat agtgcctgac 19606802 19606782 73.57 47.16 26.41 Both chr14 16 19610326 19610233 View Tyr GTA tagcgcgcac agtgcctgat 19610289 19610269 74.71 48.30 26.41 Both chr14 5 19631959 19632047 View Tyr GTA ttccgtgctt aaagctgatg 19631996 19632011 75.28 48.87 26.41 Both chr6 14 27066968 27067058 View Tyr GTA tcgtgtgaat attcacaatt 27067005 27067022 77.22 50.81 26.41 Both chr6 15 27073737 27073826 View Tyr GTA gactaggggt cgaaagtttt 27073774 27073790 75.73 50.69 25.04 Both chr6 16 27075288 27075376 View Tyr GTA cgttacgggt cggtagtttt 27075325 27075340 75.91 51.21 24.70 Both chr6 17 27094099 27094187 View Tyr GTA tcaatgacat gttccatttt 27094136 27094151 74.55 49.85 24.70 Both chr2a 2 27640594 27640682 View Tyr GTA cgcagcggag cttcgtctgt 27640631 27640646 76.51 50.10 26.41 Both chr8 10 63940029 63939942 View Tyr GTA agtcctgccc acacctttgt 63939992 63939977 58.24 39.76 18.48 Both chr8 3 64367383 64367475 View Tyr GTA cgtacacgtc gacaagtgcg 64367420 64367439 73.67 47.26 26.41 Both chr8 4 64368288 64368376 View Tyr GTA nnnnnnnnnn gagatcccca 64368325 64368340 69.69 43.28 26.41 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr6 138 28194302 28194230 View Val AAC gaaagagggt agtaggctta 0 0 78.95 59.52 19.43 Both chr5 13 183713996 183713924 View Val AAC ctccgcatct agactgtttt 0 0 80.14 58.56 21.58 Both chr6 141 28163553 28163481 View Val AAC caccagggtt agtggttacc 0 0 86.73 61.61 25.12 Both chr3 4 174968938 174969010 View Val AAC gcaaggtggg cactgcgtgg 0 0 86.79 61.60 25.19 Both chr5 16 183683774 183683702 View Val AAC gtaggtgtgg cacagtagtg 0 0 86.79 61.60 25.19 Both chr5 18 183617934 183617862 View Val AAC actcacgtaa gaatcttatg 0 0 86.79 61.60 25.19 Both chr5 7 183662293 183662365 View Val AAC actcacgtaa gaatcttatg 0 0 86.79 61.60 25.19 Both chr5_random 1 576545 576617 View Val AAC ctccgcatct aaaccgtgtt 0 0 86.79 61.60 25.19 Both chr6 134 28269034 28268962 View Val AAC gtaactgttg aaaagagtag 0 0 86.79 61.60 25.19 Both chr6 36 27735402 27735474 View Val AAC tactaaataa gagcttagtt 0 0 86.79 61.60 25.19 Both chrUn 9 33004157 33004085 View Val CAC tgcatatgca tcgtggtttt 0 0 54.01 38.29 15.72 Both chr1_random 25 6497317 6497245 View Val CAC tgcatatgca tcgtgggttt 0 0 59.49 45.69 13.80 Both chr6 135 28243998 28243926 View Val CAC cgagttaggg ttatattgtc 0 0 69.30 56.31 12.99 Both chr6 159 27705878 27705806 View Val CAC tcccatagtt ttctttactc 0 0 71.30 51.49 19.81 Both chr6 154 27780077 27780005 View Val CAC aaacgtcagg acctgtactt 0 0 78.19 57.88 20.31 Both chr19 11 4797382 4797310 View Val CAC acgcctaccg actcagctgt 0 0 81.54 57.34 24.20 Both chr1 40 140694584 140694512 View Val CAC ccaccgcctg aagtggttcc 0 0 87.39 62.20 25.19 Both chr1 45 128727552 128727480 View Val CAC tctgcgtgtg tagggttttt 0 0 87.39 62.20 25.19 Both chr5 11 183718114 183718042 View Val CAC agccaaggtg cgttttggtc 0 0 87.39 62.20 25.19 Both chr5 5 183595961 183596033 View Val CAC catcaagccg gttccttcta 0 0 87.39 62.20 25.19 Both chr6 9 27037761 27037833 View Val CAC tgcttagtgg cgtttttttt 0 0 87.39 62.20 25.19 Both chr5 19 183600346 183600274 View Val CAC catcaagccg gttccttcta 0 0 87.79 62.60 25.19 Both chr17 3 17454791 17454863 View Val TAC aaaagcatgc cggcggggtc 0 0 61.28 42.98 18.30 tRNAscan chr6 157 27730883 27730801 View Val TAC ggctgttatc agcgttggtg 0 0 67.83 43.76 24.07 Both chr6 40 27792109 27792181 View Val TAC cagcacacag ccttgcaatt 0 0 70.42 44.23 26.19 Both chr6 39 27790372 27790444 View Val TAC cagcacacag acttgcaatt 0 0 76.42 49.86 26.56 Both chr11 20 57761676 57761604 View Val TAC agtcgtgtga tcagatgtta 0 0 78.02 52.98 25.04 Both chr10 9 6000395 6000323 View Val TAC catagcctgt tggtgtggtc 0 0 81.67 56.63 25.04 Both chr11 19 57762036 57761964 View Val TAC ttccgcacgc cggcgtgatt 0 0 82.67 57.63 25.04 Both chrX 3 18709167 18709095 View Val TAC tcctcgtgga tacccgtaag 0 0 85.12 60.08 25.04 Both chr16 27 29997618 29997525 View Val TAC accaccacgt tgttttcttc 29997580 29997561 57.86 35.57 22.29 Both

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.